Package evaluation to test OrdinalGWAS on Julia 1.12.4 (422f456051*) started at 2026-01-29T17:01:12.906 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.25s ################################################################################ # Installation # Installing OrdinalGWAS... Resolving package versions... Installed SciMLPublic ────────────────────── v1.0.1 Installed HypergeometricFunctions ────────── v0.3.28 Installed StatsFuns ──────────────────────── v1.5.2 Installed OffsetArrays ───────────────────── v1.17.0 Installed BioGenerics ────────────────────── v0.1.5 Installed CodecXz ────────────────────────── v0.7.4 Installed Preferences ────────────────────── v1.5.1 Installed MutableArithmetics ─────────────── v1.6.7 Installed InlineStrings ──────────────────── v1.4.5 Installed Accessors ──────────────────────── v0.1.43 Installed PDMats ─────────────────────────── v0.11.37 Installed ProgressMeter ──────────────────── v1.11.0 Installed DelimitedFiles ─────────────────── v1.9.1 Installed FileIO ─────────────────────────── v1.17.1 Installed Roots ──────────────────────────── v2.2.10 Installed OpenBLAS32_jll ─────────────────── v0.3.30+0 Installed InvertedIndices ────────────────── v1.3.1 Installed OrdinalMultinomialModels ───────── v0.4.5 Installed Statistics ─────────────────────── v1.11.1 Installed Static ─────────────────────────── v1.3.1 Installed GLM ────────────────────────────── v1.9.2 Installed Missings ───────────────────────── v1.2.0 Installed SLEEFPirates ───────────────────── v0.6.43 Installed DataFrames ─────────────────────── v1.8.1 Installed SIMDTypes ──────────────────────── v0.1.0 Installed Xorg_libpciaccess_jll ──────────── v0.18.1+0 Installed IrrationalConstants ────────────── v0.2.6 Installed SIMD ───────────────────────────── v3.7.2 Installed CpuId ──────────────────────────── v0.3.1 Installed NLopt ──────────────────────────── v0.6.5 Installed OrdinalGWAS ────────────────────── v0.7.2 Installed MUMPS_seq_jll ──────────────────── v500.800.200+0 Installed Hwloc_jll ──────────────────────── v2.12.2+0 Installed PtrArrays ──────────────────────── v1.3.0 Installed JSON ───────────────────────────── v1.4.0 Installed Bzip2_jll ──────────────────────── v1.0.9+0 Installed CodecBzip2 ─────────────────────── v0.8.5 Installed SentinelArrays ─────────────────── v1.4.9 Installed SpecialFunctions ───────────────── v2.6.1 Installed IfElse ─────────────────────────── v0.1.1 Installed XZ_jll ─────────────────────────── v5.8.2+0 Installed BenchmarkTools ─────────────────── v1.6.3 Installed MathOptInterface ───────────────── v1.48.0 Installed StaticArraysCore ───────────────── v1.4.4 Installed NaNMath ────────────────────────── v1.1.3 Installed WorkerUtilities ────────────────── v1.6.1 Installed ThreadingUtilities ─────────────── v0.5.5 Installed Ipopt_jll ──────────────────────── v300.1400.1901+0 Installed ManualMemory ───────────────────── v0.1.8 Installed HypothesisTests ────────────────── v0.11.6 Installed Rmath_jll ──────────────────────── v0.5.1+0 Installed DBInterface ────────────────────── v2.6.1 Installed MathProgBase ───────────────────── v0.7.8 Installed TranscodingStreams ─────────────── v0.9.13 Installed WeakRefStrings ─────────────────── v1.4.2 Installed StatsModels ────────────────────── v0.7.8 Installed StatsAPI ───────────────────────── v1.8.0 Installed CommonSubexpressions ───────────── v0.3.1 Installed ExprTools ──────────────────────── v0.1.10 Installed DataStructures ─────────────────── v0.19.3 Installed Compat ─────────────────────────── v4.18.1 Installed BufferedStreams ────────────────── v1.2.2 Installed METIS_jll ──────────────────────── v5.1.3+0 Installed CommonWorldInvalidations ───────── v1.0.0 Installed Glob ───────────────────────────── v1.4.0 Installed CodecZlib ──────────────────────── v0.7.8 Installed Automa ─────────────────────────── v1.1.0 Installed StaticArrayInterface ───────────── v1.8.0 Installed StructTypes ────────────────────── v1.11.0 Installed Scratch ────────────────────────── v1.3.0 Installed StatsBase ──────────────────────── v0.34.10 Installed BitTwiddlingConvenienceFunctions ─ v0.1.6 Installed DiffRules ──────────────────────── v1.15.1 Installed LayoutPointers ─────────────────── v0.1.17 Installed SPRAL_jll ──────────────────────── v2025.9.18+0 Installed Zstd_jll ───────────────────────── v1.5.7+1 Installed JSON3 ──────────────────────────── v1.14.3 Installed TableTraits ────────────────────── v1.0.1 Installed DiffResults ────────────────────── v1.1.0 Installed Parsers ────────────────────────── v2.8.3 Installed PooledArrays ───────────────────── v1.4.3 Installed CategoricalArrays ──────────────── v0.10.7 Installed JLLWrappers ────────────────────── v1.7.1 Installed LoopVectorization ──────────────── v0.12.173 Installed PrettyTables ───────────────────── v3.1.2 Installed TimeZones ──────────────────────── v1.22.2 Installed ConstructionBase ───────────────── v1.6.0 Installed DataValueInterfaces ────────────── v1.0.0 Installed Combinatorics ──────────────────── v1.1.0 Installed OrderedCollections ─────────────── v1.8.1 Installed PolyesterWeave ─────────────────── v0.2.2 Installed ArrayInterface ─────────────────── v7.22.0 Installed Reexport ───────────────────────── v1.2.2 Installed VCFTools ───────────────────────── v0.2.10 Installed CloseOpenIntervals ─────────────── v0.1.13 Installed AliasTables ────────────────────── v1.1.3 Installed LogExpFunctions ────────────────── v0.3.29 Installed VariantCallFormat ──────────────── v0.5.9 Installed CompositionsBase ───────────────── v0.1.2 Installed OpenSpecFun_jll ────────────────── v0.5.6+0 Installed MacroTools ─────────────────────── v0.5.16 Installed ASL_jll ────────────────────────── v0.1.3+0 Installed UnPack ─────────────────────────── v1.0.2 Installed InverseFunctions ───────────────── v0.1.17 Installed Crayons ────────────────────────── v4.1.1 Installed CommonSolve ────────────────────── v0.2.6 Installed BGEN ───────────────────────────── v0.1.17 Installed DocStringExtensions ────────────── v0.9.5 Installed NLopt_jll ──────────────────────── v2.10.0+0 Installed RData ──────────────────────────── v0.8.3 Installed Adapt ──────────────────────────── v4.4.0 Installed dlfcn_win32_jll ────────────────── v1.4.2+0 Installed XML2_jll ───────────────────────── v2.13.9+0 Installed SQLite_jll ─────────────────────── v3.51.2+0 Installed Rmath ──────────────────────────── v0.9.0 Installed CPUSummary ─────────────────────── v0.2.7 Installed Ipopt ──────────────────────────── v1.14.0 Installed DataAPI ────────────────────────── v1.16.0 Installed SQLite ─────────────────────────── v1.8.0 Installed VectorizationBase ──────────────── v0.21.72 Installed Tables ─────────────────────────── v1.12.1 Installed Mocking ────────────────────────── v0.8.1 Installed CSV ────────────────────────────── v0.10.15 Installed TZJData ────────────────────────── v1.5.0+2025b Installed Libiconv_jll ───────────────────── v1.18.0+0 Installed IteratorInterfaceExtensions ────── v1.0.0 Installed PrecompileTools ────────────────── v1.3.3 Installed BGZFStreams ────────────────────── v0.3.2 Installed LaTeXStrings ───────────────────── v1.4.0 Installed HostCPUFeatures ────────────────── v0.1.18 Installed FilePathsBase ──────────────────── v0.9.24 Installed FillArrays ─────────────────────── v1.16.0 Installed ForwardDiff ────────────────────── v1.3.1 Installed ShiftedArrays ──────────────────── v2.0.0 Installed CodecZstd ──────────────────────── v0.8.7 Installed QuadGK ─────────────────────────── v2.11.2 Installed Requires ───────────────────────── v1.3.1 Installed StringManipulation ─────────────── v0.4.2 Installed SortingAlgorithms ──────────────── v1.2.2 Installed StructUtils ────────────────────── v2.6.2 Installed Distributions ──────────────────── v0.25.123 Installed SnpArrays ──────────────────────── v0.3.22 Installed RDatasets ──────────────────────── v0.7.7 Installing 18 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Zstd 646.0 KiB Installed artifact METIS 1.1 MiB Installed artifact Ipopt 1.3 MiB Installed artifact NLopt 322.7 KiB Installed artifact SPRAL 691.9 KiB Installed artifact Hwloc 3.5 MiB Installed artifact tzjdata 112.5 KiB Installed artifact Bzip2 503.5 KiB Installed artifact SQLite 1.7 MiB Installed artifact Xorg_libpciaccess 24.8 KiB Installed artifact Rmath 121.9 KiB Installed artifact ASL 276.3 KiB Installed artifact Libiconv 1.9 MiB Installed artifact XZ 1.5 MiB Installed artifact XML2 2.5 MiB Installed artifact MUMPS_seq 8.6 MiB Installed artifact OpenBLAS32 10.0 MiB Updating `~/.julia/environments/v1.12/Project.toml` [00428148] + OrdinalGWAS v0.7.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [67c07d97] + Automa v1.1.0 ⌅ [6db4b851] + BGEN v0.1.17 [28d598bf] + BGZFStreams v0.3.2 [6e4b80f9] + BenchmarkTools v1.6.3 [47718e42] + BioGenerics v0.1.5 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [2a0fbf3d] + CPUSummary v0.2.7 [336ed68f] + CSV v0.10.15 ⌅ [324d7699] + CategoricalArrays v0.10.7 [fb6a15b2] + CloseOpenIntervals v0.1.13 [523fee87] + CodecBzip2 v0.8.5 [ba30903b] + CodecXz v0.7.4 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [a10d1c49] + DBInterface v2.6.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [f6369f11] + ForwardDiff v1.3.1 [38e38edf] + GLM v1.9.2 [c27321d9] + Glob v1.4.0 [3e5b6fbb] + HostCPUFeatures v0.1.18 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [615f187c] + IfElse v0.1.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [b6b21f68] + Ipopt v1.14.0 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.173 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [b8f27783] + MathOptInterface v1.48.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [00428148] + OrdinalGWAS v0.7.2 [b51826c6] + OrdinalMultinomialModels v0.4.5 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 ⌅ [df47a6cb] + RData v0.8.3 ⌅ [ce6b1742] + RDatasets v0.7.7 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 [fdea26ae] + SIMD v3.7.2 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [0aa819cd] + SQLite v1.8.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [4e780e97] + SnpArrays v0.3.22 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.2 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [f269a46b] + TimeZones v1.22.2 ⌅ [3bb67fe8] + TranscodingStreams v0.9.13 [3a884ed6] + UnPack v1.0.2 [a620830f] + VCFTools v0.2.10 [28eba6e3] + VariantCallFormat v0.5.9 [3d5dd08c] + VectorizationBase v0.21.72 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [ae81ac8f] + ASL_jll v0.1.3+0 [6e34b625] + Bzip2_jll v1.0.9+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [9cc047cb] + Ipopt_jll v300.1400.1901+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [d00139f3] + METIS_jll v5.1.3+0 [d7ed1dd3] + MUMPS_seq_jll v500.800.200+0 [079eb43e] + NLopt_jll v2.10.0+0 [656ef2d0] + OpenBLAS32_jll v0.3.30+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [319450e9] + SPRAL_jll v2025.9.18+0 [76ed43ae] + SQLite_jll v3.51.2+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [c4b69c83] + dlfcn_win32_jll v1.4.2+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 19.81s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4381.5 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 2345.0 ms ✓ Combinatorics 877.7 ms ✓ LaTeXStrings 1069.4 ms ✓ Glob 905.4 ms ✓ ExprTools 736.9 ms ✓ IteratorInterfaceExtensions 1096.3 ms ✓ WorkerUtilities 842.1 ms ✓ StatsAPI 1718.4 ms ✓ OffsetArrays 794.9 ms ✓ UnPack 1783.1 ms ✓ FillArrays 951.1 ms ✓ InverseFunctions 997.9 ms ✓ BufferedStreams 1118.8 ms ✓ Statistics 885.4 ms ✓ CommonSolve 7073.5 ms ✓ MacroTools 942.9 ms ✓ ManualMemory 933.6 ms ✓ TZJData 896.5 ms ✓ ShiftedArrays 4150.5 ms ✓ OrderedCollections 1188.1 ms ✓ Requires 754.7 ms ✓ DataValueInterfaces 751.4 ms ✓ Reexport 752.7 ms ✓ SIMDTypes 1283.2 ms ✓ DocStringExtensions 1842.0 ms ✓ InlineStrings 5142.7 ms ✓ IrrationalConstants 827.7 ms ✓ CompositionsBase 805.1 ms ✓ PtrArrays 836.5 ms ✓ DBInterface 3936.9 ms ✓ NaNMath 988.7 ms ✓ DelimitedFiles 859.6 ms ✓ InvertedIndices 768.4 ms ✓ IfElse 3954.7 ms ✓ ConstructionBase 783.8 ms ✓ CommonWorldInvalidations 846.1 ms ✓ DataAPI 4864.3 ms ✓ Crayons 903.9 ms ✓ SciMLPublic 985.1 ms ✓ StaticArraysCore 1923.7 ms ✓ ProgressMeter 1790.3 ms ✓ PDMats 5208.9 ms ✓ MathProgBase 1961.0 ms ✓ SentinelArrays 4546.1 ms ✓ StructTypes 4465.3 ms ✓ StructUtils 903.7 ms ✓ Scratch 1831.3 ms ✓ CpuId 1169.0 ms ✓ Preferences 3906.2 ms ✓ Compat 2245.5 ms ✓ TranscodingStreams 11257.8 ms ✓ MutableArithmetics 760.5 ms ✓ TableTraits 1421.0 ms ✓ FillArrays → FillArraysSparseArraysExt 1749.4 ms ✓ InverseFunctions → InverseFunctionsTestExt 863.1 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1264.8 ms ✓ Statistics → SparseArraysExt 890.6 ms ✓ FillArrays → FillArraysStatisticsExt 1720.6 ms ✓ CommonSubexpressions 4922.9 ms ✓ ThreadingUtilities 3601.3 ms ✓ DataStructures 966.9 ms ✓ Adapt 9065.0 ms ✓ FileIO 1382.2 ms ✓ LogExpFunctions 818.4 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 964.0 ms ✓ AliasTables 821.8 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 1032.3 ms ✓ PooledArrays 3812.8 ms ✓ Missings 902.6 ms ✓ DiffResults 1593.4 ms ✓ FillArrays → FillArraysPDMatsExt 1282.2 ms ✓ JLLWrappers 950.5 ms ✓ PrecompileTools 972.8 ms ✓ Compat → CompatLinearAlgebraExt 4817.1 ms ✓ BioGenerics 1753.3 ms ✓ CodecZlib 4595.3 ms ✓ Tables 1148.6 ms ✓ SortingAlgorithms 5167.0 ms ✓ QuadGK 1266.9 ms ✓ Adapt → AdaptSparseArraysExt 4063.3 ms ✓ ArrayInterface 905.7 ms ✓ OffsetArrays → OffsetArraysAdaptExt 803.8 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 8249.7 ms ✓ Accessors 7974.9 ms ✓ CategoricalArrays 1147.8 ms ✓ dlfcn_win32_jll 1441.0 ms ✓ Bzip2_jll 1470.1 ms ✓ Xorg_libpciaccess_jll 1420.9 ms ✓ METIS_jll 1392.1 ms ✓ Rmath_jll 1427.7 ms ✓ ASL_jll 1468.6 ms ✓ XZ_jll 1427.0 ms ✓ NLopt_jll 1443.9 ms ✓ Zstd_jll 1434.2 ms ✓ Libiconv_jll 1449.1 ms ✓ OpenSpecFun_jll 1449.3 ms ✓ OpenBLAS32_jll 3531.1 ms ✓ StringManipulation 20195.1 ms ✓ SIMD 22367.9 ms ✓ Parsers 7305.2 ms ✓ Static 1340.6 ms ✓ Mocking 2529.3 ms ✓ FilePathsBase 1760.5 ms ✓ BGZFStreams 1039.0 ms ✓ StructUtils → StructUtilsTablesExt 7300.1 ms ✓ StatsBase 1246.1 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 773.7 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 2107.3 ms ✓ Accessors → LinearAlgebraExt 1951.1 ms ✓ Accessors → TestExt 1435.7 ms ✓ SQLite_jll 1675.1 ms ✓ CodecBzip2 1378.6 ms ✓ MUMPS_seq_jll 1596.2 ms ✓ Rmath 1565.2 ms ✓ CodecXz 2799.4 ms ✓ CodecZstd 1469.4 ms ✓ XML2_jll 5657.2 ms ✓ SpecialFunctions 45163.7 ms ✓ PrettyTables 26360.4 ms ✓ Automa 18523.0 ms ✓ JSON3 10922.9 ms ✓ JSON 992.8 ms ✓ InlineStrings → ParsersExt 915.8 ms ✓ BitTwiddlingConvenienceFunctions 2548.7 ms ✓ CPUSummary 10185.5 ms ✓ StaticArrayInterface 11142.9 ms ✓ TimeZones 1414.1 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3240.2 ms ✓ FilePathsBase → FilePathsBaseTestExt 1418.9 ms ✓ PDMats → StatsBaseExt 9898.9 ms ✓ Roots 1454.3 ms ✓ Hwloc_jll 2229.3 ms ✓ HypergeometricFunctions 1450.2 ms ✓ DiffRules 93642.4 ms ✓ DataFrames 20744.6 ms ✓ VariantCallFormat 3095.0 ms ✓ BenchmarkTools 2596.4 ms ✓ WeakRefStrings 2048.2 ms ✓ HostCPUFeatures 2023.9 ms ✓ PolyesterWeave 1170.2 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1277.3 ms ✓ CloseOpenIntervals 1399.0 ms ✓ LayoutPointers 1439.5 ms ✓ SPRAL_jll 5619.0 ms ✓ StatsFuns 9757.3 ms ✓ ForwardDiff 24427.3 ms ✓ RData 33779.9 ms ✓ CSV 4110.1 ms ✓ SQLite 19966.2 ms ✓ VectorizationBase 1604.7 ms ✓ Ipopt_jll 967.5 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 4537.5 ms ✓ StatsModels 9331.0 ms ✓ Distributions 1428.4 ms ✓ Roots → RootsForwardDiffExt 86520.4 ms ✓ MathOptInterface 20722.7 ms ✓ RDatasets 8649.1 ms ✓ BGEN 5892.3 ms ✓ SLEEFPirates 1388.7 ms ✓ Ipopt 3396.2 ms ✓ Distributions → DistributionsTestExt 4980.5 ms ✓ GLM 4264.6 ms ✓ HypothesisTests 7672.8 ms ✓ NLopt 54251.8 ms ✓ LoopVectorization 55387.5 ms ✓ Ipopt → IpoptMathOptInterfaceExt 7750.4 ms ✓ VCFTools 4874.2 ms ✓ LoopVectorization → SpecialFunctionsExt 15401.4 ms ✓ OrdinalMultinomialModels ✗ SnpArrays ✗ OrdinalGWAS 168 dependencies successfully precompiled in 1051 seconds. 39 already precompiled. 1 dependency had output during precompilation: ┌ VariantCallFormat │ [ Info: Compiling VCF parser... └ ERROR: LoadError: The following 2 direct dependencies failed to precompile: OrdinalGWAS Failed to precompile OrdinalGWAS [00428148-03d9-50ae-bfb7-4a690d5612f1] to "/home/pkgeval/.julia/compiled/v1.12/OrdinalGWAS/jl_78ij0v". ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3024 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [7] include_string @ ./loading.jl:2880 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.12/SnpArrays/jl_RCW1fu". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3311 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2679 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3882 [10] maybe_cachefile_lock @ ./loading.jl:3879 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2665 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [13] macro expansion @ ./loading.jl:2421 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2362 [17] top-level scope @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [23] include_string @ ./loading.jl:2880 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 in expression starting at stdin:5 SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.12/SnpArrays/jl_UopNch". ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [7] include_string @ ./loading.jl:2880 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 1069.78s ################################################################################ # Testing # Testing OrdinalGWAS Status `/tmp/jl_JVqUMR/Project.toml` ⌅ [6db4b851] BGEN v0.1.17 [336ed68f] CSV v0.10.15 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [b8f27783] MathOptInterface v1.48.0 [00428148] OrdinalGWAS v0.7.2 [b51826c6] OrdinalMultinomialModels v0.4.5 [189a3867] Reexport v1.2.2 [4e780e97] SnpArrays v0.3.22 [3eaba693] StatsModels v0.7.8 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [37e2e46d] LinearAlgebra v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JVqUMR/Manifest.toml` [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [67c07d97] Automa v1.1.0 ⌅ [6db4b851] BGEN v0.1.17 [28d598bf] BGZFStreams v0.3.2 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.7 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [ba30903b] CodecXz v0.7.4 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [a10d1c49] DBInterface v2.6.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [f6369f11] ForwardDiff v1.3.1 [38e38edf] GLM v1.9.2 [c27321d9] Glob v1.4.0 [3e5b6fbb] HostCPUFeatures v0.1.18 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.6 [615f187c] IfElse v0.1.1 [842dd82b] InlineStrings v1.4.5 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [b6b21f68] Ipopt v1.14.0 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [2ab3a3ac] LogExpFunctions v0.3.29 [bdcacae8] LoopVectorization v0.12.173 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [b8f27783] MathOptInterface v1.48.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [00428148] OrdinalGWAS v0.7.2 [b51826c6] OrdinalMultinomialModels v0.4.5 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [1d0040c9] PolyesterWeave v0.2.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 ⌅ [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [f2b01f46] Roots v2.2.10 [fdea26ae] SIMD v3.7.2 [94e857df] SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0aa819cd] SQLite v1.8.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [4e780e97] SnpArrays v0.3.22 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [f269a46b] TimeZones v1.22.2 ⌅ [3bb67fe8] TranscodingStreams v0.9.13 [3a884ed6] UnPack v1.0.2 [a620830f] VCFTools v0.2.10 [28eba6e3] VariantCallFormat v0.5.9 [3d5dd08c] VectorizationBase v0.21.72 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [ae81ac8f] ASL_jll v0.1.3+0 [6e34b625] Bzip2_jll v1.0.9+0 [e33a78d0] Hwloc_jll v2.12.2+0 [9cc047cb] Ipopt_jll v300.1400.1901+0 [94ce4f54] Libiconv_jll v1.18.0+0 [d00139f3] METIS_jll v5.1.3+0 [d7ed1dd3] MUMPS_seq_jll v500.800.200+0 [079eb43e] NLopt_jll v2.10.0+0 [656ef2d0] OpenBLAS32_jll v0.3.30+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [319450e9] SPRAL_jll v2025.9.18+0 [76ed43ae] SQLite_jll v3.51.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [c4b69c83] dlfcn_win32_jll v1.4.2+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... ✗ SnpArrays Info Given OrdinalGWAS was explicitly requested, output will be shown live  ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace:  [1] top-level scope  @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3024  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [7] include_string  @ ./loading.jl:2880 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [9] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.12/SnpArrays/jl_DPZIDT". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3311  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2679  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114  [7] #invokelatest_gr#232  @ ./reflection.jl:1297 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1289 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3882  [10] maybe_cachefile_lock  @ ./loading.jl:3879 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [13] macro expansion  @ ./loading.jl:2421 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2362  [17] top-level scope  @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7  [18] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3024  [20] top-level scope  @ stdin:5  [21] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [23] include_string  @ ./loading.jl:2880 [inlined]  [24] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [25] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 in expression starting at stdin:5 ✗ OrdinalGWAS 0 dependencies successfully precompiled in 85 seconds. 207 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: OrdinalGWAS Failed to precompile OrdinalGWAS [00428148-03d9-50ae-bfb7-4a690d5612f1] to "/home/pkgeval/.julia/compiled/v1.12/OrdinalGWAS/jl_w8FRyR". ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3024 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [7] include_string @ ./loading.jl:2880 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.12/SnpArrays/jl_DPZIDT". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3311 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2679 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3882 [10] maybe_cachefile_lock @ ./loading.jl:3879 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2665 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [13] macro expansion @ ./loading.jl:2421 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2362 [17] top-level scope @ ~/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:7 [18] include(mod::Module, _path::String) @ Base ./Base.jl:306 [19] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [20] top-level scope @ stdin:5 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [23] include_string @ ./loading.jl:2880 [inlined] [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [25] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/src/OrdinalGWAS.jl:3 in expression starting at stdin:5 SnpArrays Failed to precompile SnpArrays [4e780e97-f5bf-4111-9dc4-b70aaf691b06] to "/home/pkgeval/.julia/compiled/v1.12/SnpArrays/jl_nDKkqT". ERROR: LoadError: invalid assignment to constant SnpArrays.AbstractSnpArray. This redefinition may be permitted using the `const` keyword. Stacktrace: [1] top-level scope @ ~/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:48 [2] include(mod::Module, _path::String) @ Base ./Base.jl:306 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [7] include_string @ ./loading.jl:2880 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/SnpArrays/CSYLc/src/SnpArrays.jl:3 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/OrdinalGWAS/r0sGl/test/runtests.jl:1 Testing failed after 96.55s ERROR: LoadError: Package OrdinalGWAS errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1217.73s: package fails to precompile