Package evaluation to test MuseInference on Julia 1.12.4 (422f456051*) started at 2026-01-29T10:02:31.266 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.24s ################################################################################ # Installation # Installing MuseInference... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [43b88160] + MuseInference v0.2.4 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 ⌅ [c29ec348] + AbstractDifferentiation v0.5.3 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [d360d2e6] + ChainRulesCore v1.26.0 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 ⌅ [b0b7db55] + ComponentArrays v0.13.15 [187b0558] + ConstructionBase v1.6.0 [587fd27a] + CovarianceEstimation v0.2.13 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [26cc04aa] + FiniteDifferences v0.12.33 ⌅ [f6369f11] + ForwardDiff v0.10.39 ⌅ [d9f16b24] + Functors v0.4.12 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [692b3bcd] + JLLWrappers v1.7.1 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [43b88160] + MuseInference v0.2.4 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [d9ec5142] + NamedTupleTools v0.14.3 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [708f8203] + Richardson v1.4.2 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [9449cd9e] + TSVD v0.4.4 [3a884ed6] + UnPack v1.0.2 [efce3f68] + WoodburyMatrices v1.1.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.27s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 3214.8 ms ✓ Atomix 4481.5 ms ✓ AbstractDifferentiation 931.1 ms ✓ TSVD 4892.0 ms ✓ StructArrays 10231.8 ms ✓ Roots 5430.3 ms ✓ Optimisers 1395.3 ms ✓ TransmuteDims 7505.9 ms ✓ SciMLOperators 48260.2 ms ✓ Polynomials 5192.8 ms ✓ SimplePartitions 14370.8 ms ✓ NestedTuples 7530.6 ms ✓ Transducers → TransducersLazyArraysExt 14224.1 ms ✓ MeasureBase 13196.0 ms ✓ ComponentArrays 4294.3 ms ? ArrayInterfaceStaticArrays 1169.2 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 7742.5 ms ✓ Interpolations 5696.9 ms ✓ MCMCDiagnostics 45768.0 ms ✓ AbstractMCMC 10391.2 ms ✓ GPUArrays 29996.9 ms ✓ Distributions 8995.9 ms ✓ TransformVariables 5059.7 ms ✓ LogDensityProblemsAD → LogDensityProblemsADForwardDiffExt 6098.0 ms ✓ PreallocationTools 41519.5 ms ✓ NLSolversBase 12559.2 ms ✓ KernelAbstractions 2531.2 ms ✓ AbstractDifferentiation → AbstractDifferentiationChainRulesCoreExt 3922.2 ms ✓ AbstractDifferentiation → AbstractDifferentiationFiniteDifferencesExt 9389.6 ms ✓ AbstractDifferentiation → AbstractDifferentiationForwardDiffExt 7173.9 ms ✓ CovarianceEstimation 1385.6 ms ✓ StructArrays → StructArraysAdaptExt 1877.6 ms ✓ StructArrays → StructArraysSparseArraysExt 5489.0 ms ✓ StructArrays → StructArraysStaticArraysExt 1276.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1589.0 ms ✓ Accessors → StructArraysExt 8627.8 ms ✓ BangBang → BangBangStructArraysExt 1525.8 ms ✓ Roots → RootsChainRulesCoreExt 30329.5 ms ✓ Roots → RootsForwardDiffExt 25804.3 ms ✓ TensorCast 52030.5 ms ✓ SciMLBase 4187.5 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 5917.8 ms ✓ Polynomials → PolynomialsMutableArithmeticsExt 7384.1 ms ✓ SimplePolynomials 3199.3 ms ✓ Interpolations → InterpolationsForwardDiffExt 64391.6 ms ✓ AdvancedHMC 10020.4 ms ✓ AbstractPPL 36245.5 ms ✓ Distributions → DistributionsDensityInterfaceExt 7468.3 ms ✓ Distributions → DistributionsTestExt 10364.4 ms ✓ Distributions → DistributionsChainRulesCoreExt 10022.4 ms ✓ SimpleRandom 9009.1 ms ✓ MCMCDiagnosticTools 46650.2 ms ✓ LabelledArrays 24209.4 ms ✓ LineSearches 3565.9 ms ✓ KernelAbstractions → SparseArraysExt 2739.1 ms ✓ KernelAbstractions → LinearAlgebraExt 20619.9 ms ✓ ChainRules 46005.4 ms ✓ TupleVectors 17491.9 ms ✓ DynamicHMC 3641.2 ms ✓ LinearAlgebraX 75033.4 ms ✓ EllipticalSliceSampling 10618.4 ms ✓ AdvancedMH 8421.0 ms ✓ AdvancedPS 33575.4 ms ✓ KernelDensity 166562.3 ms ✓ MeasureTheory 67566.0 ms ✓ SymbolicUtils 32636.6 ms ✓ Optim 13791.9 ms ✓ NNlib 62819.8 ms ✓ Zygote 42124.1 ms ✓ Bijectors 13396.9 ms ✓ DistributionsAD 43313.4 ms ✓ SampleChains 77240.2 ms ✓ AdvancedMH → AdvancedMHStructArraysExt 17188.7 ms ✓ AdvancedMH → AdvancedMHForwardDiffExt 92591.8 ms ✓ MCMCChains 18615.5 ms ? MuseInference 110171.9 ms ✓ SimpleGraphs 3002.6 ms ✓ NNlib → NNlibSpecialFunctionsExt 34211.6 ms ✓ NNlib → NNlibForwardDiffExt 84271.3 ms ✓ Zygote → ZygoteColorsExt 8163.0 ms ✓ LogDensityProblemsAD → LogDensityProblemsADZygoteExt 5400.8 ms ✓ AbstractDifferentiation → AbstractDifferentiationZygoteExt 78101.3 ms ✓ Bijectors → BijectorsZygoteExt 6207.4 ms ✓ Bijectors → BijectorsForwardDiffExt 7583.7 ms ✓ Bijectors → BijectorsLazyArraysExt 110227.9 ms ✓ DynamicPPL 20396.7 ms ✓ Bijectors → BijectorsDistributionsADExt 108651.7 ms ✓ AdvancedHMC → AdvancedHMCMCMCChainsExt 19721.0 ms ✓ AdvancedMH → AdvancedMHMCMCChainsExt 108084.3 ms ✓ SimplePosets 65747.8 ms ✓ Tracker 85371.8 ms ✓ DynamicPPL → DynamicPPLMCMCChainsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_8085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000077610d3085b0 Total snapshots: 518. Utilization: 0% ╎518 @Base/asyncevent.jl:359 (::Base.var"#634#635"{FileWatching.Pidfile.var… ╎ 518 @Base/asyncevent.jl:163 _trywait(t::Timer) ╎ 518 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Sp… ╎ 518 @Base/task.jl:1228 wait() 517╎ 518 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_67638.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_finish_task at /source/src/task.c:341 start_task at /source/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x000076b551c022c0 Total snapshots: 188. Utilization: 0% ╎188 @Base/task.jl:868 task_done_hook(t::Task) ╎ 188 @Base/task.jl:1228 wait() 187╎ 188 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait_readnb at ./stream.jl:392 eof at ./stream.jl:106 [inlined] eof at ./io.jl:472 [inlined] monitor_std at ./precompilation.jl:832 monitor_std at ./precompilation.jl:828 jfptr_monitor_std_30806.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #_precompilepkgs##34 at ./precompilation.jl:999 jfptr_YY._precompilepkgsYY.YY.34_8078.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 37539203 (Pool: 37538246; Big: 957); GC: 31 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_18905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 12198493 (Pool: 12197911; Big: 582); GC: 11 PkgEval terminated after 2756.19s: test duration exceeded the time limit