Package evaluation to test MixedAnova on Julia 1.12.4 (422f456051*) started at 2026-01-29T14:30:56.734 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.11s ################################################################################ # Installation # Installing MixedAnova... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [72e9ff3b] + MixedAnova v0.5.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [c3b6d118] + BitIntegers v0.3.7 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.7 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.16.0 ⌃ [9d5cd8c9] + FixedEffectModels v1.8.0 [c8885935] + FixedEffects v2.5.2 [f6369f11] + ForwardDiff v1.3.1 ⌃ [38e38edf] + GLM v1.8.3 [6407cd72] + GroupedArrays v0.3.4 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.48.0 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [72e9ff3b] + MixedAnova v0.5.2 ⌅ [ff71e718] + MixedModels v4.8.2 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.7 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [1277b4bf] + ShiftedArrays v2.0.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.7 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.2 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] + Vcov v0.7.1 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.8s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 275932.9 ms ✓ MixedModels 46905.6 ms ✓ MixedAnova 2 dependencies successfully precompiled in 336 seconds. 159 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels │ Minimizing 2 Time: 0:00:01 ( 0.66 s/it) │ objective: 1790.1256369894638  │  Minimizing 57 Time: 0:00:01 (25.17 ms/it) │ Minimizing 2 Time: 0:00:00 ( 0.19 s/it) │ objective: 2380.5668557322774  │  Minimizing 9 Time: 0:00:00 (53.86 ms/it) │ objective: 2453.0374442859475  │  Minimizing 16 Time: 0:00:00 (36.95 ms/it) │ objective: 2421.2378094225714  │  Minimizing 23 Time: 0:00:00 (30.15 ms/it) │ objective: 2364.512832500585  │  Minimizing 31 Time: 0:00:00 (25.83 ms/it) │ objective: 2362.5581221709335  │  Minimizing 39 Time: 0:00:00 (23.34 ms/it) │ objective: 2362.368593015948  │  Minimizing 47 Time: 0:00:01 (21.69 ms/it) │ objective: 2361.8523649119434  │  Minimizing 55 Time: 0:00:01 (20.50 ms/it) │ objective: 2361.813549588116  │  Minimizing 63 Time: 0:00:01 (19.66 ms/it) │ objective: 2361.802726617136  │  Minimizing 71 Time: 0:00:01 (19.02 ms/it) │ objective: 2361.7965702542397  │  Minimizing 79 Time: 0:00:01 (18.52 ms/it) │ objective: 2361.792316737851  │  Minimizing 87 Time: 0:00:01 (18.08 ms/it) │ objective: 2361.799003998372  │  Minimizing 95 Time: 0:00:01 (17.69 ms/it) │ objective: 2361.7603685518898  │  Minimizing 103 Time: 0:00:01 (17.34 ms/it) │ objective: 2361.7493578163485  │  Minimizing 111 Time: 0:00:01 (17.06 ms/it) │ objective: 2361.742508648016  │  Minimizing 119 Time: 0:00:02 (16.83 ms/it) │ objective: 2361.59075148358  │  Minimizing 127 Time: 0:00:02 (16.65 ms/it) │ objective: 2361.5645521753836  │  Minimizing 135 Time: 0:00:02 (16.47 ms/it) │ objective: 2361.566210986916  │  Minimizing 143 Time: 0:00:02 (16.30 ms/it) │ objective: 2361.559092262648  │  Minimizing 151 Time: 0:00:02 (16.16 ms/it) │ objective: 2361.5538181439806  │  Minimizing 159 Time: 0:00:02 (16.05 ms/it) │ objective: 2361.5539547508774  │  Minimizing 167 Time: 0:00:02 (15.94 ms/it) │ objective: 2361.548059149546  │  Minimizing 175 Time: 0:00:02 (15.84 ms/it) │ objective: 2361.5471971226552  │  Minimizing 183 Time: 0:00:02 (15.75 ms/it) │ objective: 2361.546598094273  │  Minimizing 191 Time: 0:00:02 (15.66 ms/it) │ objective: 2361.5461723735402  │  Minimizing 199 Time: 0:00:03 (15.58 ms/it) │ objective: 2361.5458989718127  │  Minimizing 207 Time: 0:00:03 (15.51 ms/it) │ objective: 2361.545845328343  │  Minimizing 215 Time: 0:00:03 (15.45 ms/it) │ objective: 2361.5457820968127  │  Minimizing 223 Time: 0:00:03 (15.39 ms/it) │ objective: 2361.5457750797673  │  Minimizing 231 Time: 0:00:03 (15.33 ms/it) │ objective: 2361.545769856768  │  Minimizing 239 Time: 0:00:03 (15.27 ms/it) │ objective: 2361.5457695020586  │  Minimizing 247 Time: 0:00:03 (15.21 ms/it) │ objective: 2361.5457693224757  │  Minimizing 250 Time: 0:00:03 (15.19 ms/it) └ Precompilation completed after 351.67s ################################################################################ # Testing # Testing MixedAnova Status `/tmp/jl_CTn50K/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [a93c6f00] DataFrames v1.8.1 ⌃ [38e38edf] GLM v1.8.3 [72e9ff3b] MixedAnova v0.5.2 ⌅ [ff71e718] MixedModels v4.8.2 [ce6b1742] RDatasets v0.8.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_CTn50K/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [6e4b80f9] BenchmarkTools v1.6.3 [c3b6d118] BitIntegers v0.3.7 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v1.0.2 [523fee87] CodecBzip2 v0.8.5 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 ⌃ [9d5cd8c9] FixedEffectModels v1.8.0 [c8885935] FixedEffects v2.5.2 [f6369f11] ForwardDiff v1.3.1 ⌃ [38e38edf] GLM v1.8.3 [6407cd72] GroupedArrays v0.3.4 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.48.0 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [72e9ff3b] MixedAnova v0.5.2 ⌅ [ff71e718] MixedModels v4.8.2 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.7 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [df47a6cb] RData v1.1.0 [ce6b1742] RDatasets v0.8.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] StringManipulation v0.4.2 [354b36f9] StringViews v1.3.7 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [dc5dba14] TZJData v1.5.0+2025b [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f269a46b] TimeZones v1.22.2 [3bb67fe8] TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] Vcov v0.7.1 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [6e34b625] Bzip2_jll v1.0.9+0 [5ced341a] Lz4_jll v1.10.1+0 [079eb43e] NLopt_jll v2.10.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [3161d3a3] Zstd_jll v1.5.7+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 32065.8 ms ✓ CSV 1 dependency successfully precompiled in 33 seconds. 29 already precompiled. Precompiling packages... 30028.5 ms ✓ RData 21624.4 ms ✓ RDatasets 2 dependencies successfully precompiled in 53 seconds. 73 already precompiled. Precompiling packages... 2803.4 ms ✓ CategoricalArrays → CategoricalArraysStatsBaseExt 1 dependency successfully precompiled in 3 seconds. 30 already precompiled. Precompiling packages... 7990.4 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 10 seconds. 50 already precompiled. Precompiling packages... 11837.4 ms ✓ GLM 1 dependency successfully precompiled in 14 seconds. 55 already precompiled. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition coefnames(MixedAnova.AnovaResult{T, MixedAnova.FTest, N} where N) where {T<:(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))})} in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:3 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:12. WARNING: Method definition coefnames(StatsModels.TableRegressionModel{var"#s27", T} where T where var"#s27"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))}, Base.Val{:anova}) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:9 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:18. Precompiling packages... 17111.3 ms ✓ Arrow 89370.5 ms ✓ MathOptInterface 8604.4 ms ✓ NLopt Info Given MixedModels was explicitly requested, output will be shown live  WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: `ProgressUnknown(desc::AbstractString; kwargs...)` is deprecated, use `ProgressUnknown(; desc = desc, kwargs...)` instead. │ caller = ip:0x0 └ @ Core :-1  Minimizing 2 Time: 0:00:01 ( 0.63 s/it)  objective: 1790.1256369894638    Minimizing 57 Time: 0:00:01 (24.17 ms/it)  Minimizing 2 Time: 0:00:00 ( 0.17 s/it)  objective: 2380.5668557322774    Minimizing 9 Time: 0:00:00 (50.14 ms/it)  objective: 2453.0374442859475    Minimizing 16 Time: 0:00:00 (34.90 ms/it)  objective: 2421.2378094225714    Minimizing 24 Time: 0:00:00 (28.02 ms/it)  objective: 2363.9391324922835    Minimizing 32 Time: 0:00:00 (24.37 ms/it)  objective: 2363.32932554389    Minimizing 40 Time: 0:00:00 (22.21 ms/it)  objective: 2362.3660401162674    Minimizing 48 Time: 0:00:00 (20.77 ms/it)  objective: 2361.8373743517136    Minimizing 56 Time: 0:00:01 (19.67 ms/it)  objective: 2361.813002782447    Minimizing 64 Time: 0:00:01 (18.81 ms/it)  objective: 2361.8043047140573    Minimizing 72 Time: 0:00:01 (18.23 ms/it)  objective: 2361.796191145783    Minimizing 80 Time: 0:00:01 (17.87 ms/it)  objective: 2361.7851689397544    Minimizing 88 Time: 0:00:01 (17.44 ms/it)  objective: 2361.770459171718    Minimizing 96 Time: 0:00:01 (17.19 ms/it)  objective: 2361.7588635770035    Minimizing 104 Time: 0:00:01 (16.87 ms/it)  objective: 2361.748041059276    Minimizing 112 Time: 0:00:01 (16.66 ms/it)  objective: 2361.814024982762    Minimizing 120 Time: 0:00:01 (16.47 ms/it)  objective: 2361.5837650835538    Minimizing 128 Time: 0:00:02 (16.32 ms/it)  objective: 2361.564339142794    Minimizing 136 Time: 0:00:02 (16.13 ms/it)  objective: 2361.5584546567657    Minimizing 144 Time: 0:00:02 (15.98 ms/it)  objective: 2361.5567513151937    Minimizing 152 Time: 0:00:02 (15.85 ms/it)  objective: 2361.553711599846    Minimizing 160 Time: 0:00:02 (15.72 ms/it)  objective: 2361.551352832925    Minimizing 168 Time: 0:00:02 (15.64 ms/it)  objective: 2361.5480564651484    Minimizing 176 Time: 0:00:02 (15.53 ms/it)  objective: 2361.5481360658223    Minimizing 184 Time: 0:00:02 (15.45 ms/it)  objective: 2361.54665543938    Minimizing 192 Time: 0:00:02 (15.34 ms/it)  objective: 2361.546173095052    Minimizing 200 Time: 0:00:03 (15.30 ms/it)  objective: 2361.5458820123686    Minimizing 208 Time: 0:00:03 (15.22 ms/it)  objective: 2361.5458073883206    Minimizing 216 Time: 0:00:03 (15.16 ms/it)  objective: 2361.5458565223125    Minimizing 224 Time: 0:00:03 (15.08 ms/it)  objective: 2361.545775204179    Minimizing 232 Time: 0:00:03 (15.04 ms/it)  objective: 2361.5457701629603    Minimizing 240 Time: 0:00:03 (14.99 ms/it)  objective: 2361.5457687960434    Minimizing 248 Time: 0:00:03 (14.93 ms/it)  objective: 2361.545768645514    Minimizing 250 Time: 0:00:03 (14.92 ms/it) 117268.9 ms ✓ MixedModels 4 dependencies successfully precompiled in 238 seconds. 129 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels │ [Output was shown above] └ Precompiling packages... 6615.4 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 1 dependency successfully precompiled in 7 seconds. 55 already precompiled. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Precompiling packages... 11054.8 ms ✓ FixedEffects 19825.2 ms ✓ Vcov 13646.4 ms ✓ FixedEffectModels 3 dependencies successfully precompiled in 47 seconds. 58 already precompiled. WARNING: Method definition formula(StatsModels.TableRegressionModel{M, T} where T where M) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:4 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:4. WARNING: Method definition width(StatsModels.FunctionTerm{Forig, Fanon, Names} where Names where Fanon where Forig) in module StatsModels at /home/pkgeval/.julia/packages/StatsModels/fK0P3/src/terms.jl:128 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:11. WARNING: Method definition dof(FixedEffectModels.FixedEffectModel) in module FixedEffectModels at /home/pkgeval/.julia/packages/FixedEffectModels/xGOsh/src/FixedEffectModel.jl:58 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:14. Simple linear regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:80 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}, ::Vector{CategoricalValue{String, UInt8}}, ::DummyCoding) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::AbstractMatrix, !Matched::Vector{U}, ::Vector{T}, ::C) where {U, T, C<:AbstractContrasts} @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ezbpk/src/grouping.jl:32 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:283 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::DummyCoding, levels::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:205 [2] concrete_term(t::Term, xs::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}, contrasts::DummyCoding) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:212 [3] concrete_term @ ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:206 [inlined] [4] concrete_term(t::Term, xs::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}, ::Nothing) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:205 [5] concrete_term(t::Term, dt::@NamedTuple{SepalLength::Vector{Float64}, SepalWidth::Vector{Float64}, Species::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}}, hints::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:184 [6] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{SepalLength::Vector{Float64}, SepalWidth::Vector{Float64}, Species::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}}, Dict{Symbol, Any}})(t::Term) @ StatsModels ./none:-1 [7] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{SepalLength::Vector{Float64}, SepalWidth::Vector{Float64}, Species::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}}, Dict{Symbol, Any}}}) @ Base ./dict.jl:90 [8] schema(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::@NamedTuple{SepalLength::Vector{Float64}, SepalWidth::Vector{Float64}, Species::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}}, hints::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:126 [9] ModelFrame(f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::@NamedTuple{SepalLength::Vector{Float64}, SepalWidth::Vector{Float64}, PetalLength::Vector{Float64}, PetalWidth::Vector{Float64}, Species::CategoricalVector{String, UInt8, String, CategoricalValue{String, UInt8}, Union{}}}; model::Type{LinearModel}, contrasts::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/modelframe.jl:83 [10] fit(::Type{LinearModel}, f::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, args::Nothing; contrasts::Dict{Symbol, Any}, kwargs::@Kwargs{dropcollinear::Bool}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/statsmodel.jl:85 [11] fit @ ~/.julia/packages/StatsModels/fK0P3/src/statsmodel.jl:78 [inlined] [12] lm (repeats 2 times) @ ~/.julia/packages/GLM/6ycOV/src/lm.jl:157 [inlined] [13] nestedmodels(::Type{LinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame; null::Bool, kwargs::@Kwargs{dropcollinear::Bool}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:314 [14] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:80 [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [16] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:81 [inlined] [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [18] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:81 [inlined] [19] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [20] top-level scope @ none:6 [21] eval(m::Module, e::Any) @ Core ./boot.jl:489 [22] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [23] _start() @ Base ./client.jl:550 Linear regression with frequency weights: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:110 Got exception outside of a @test MethodError: no method matching StatsModels.ContrastsMatrix(::Matrix{Float64}, ::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Vector{CategoricalValue{Int64, UInt32}}, ::DummyCoding) The type `StatsModels.ContrastsMatrix` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: StatsModels.ContrastsMatrix(::AbstractMatrix, !Matched::Vector{U}, ::Vector{T}, ::C) where {U, T, C<:AbstractContrasts} @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:110 StatsModels.ContrastsMatrix(!Matched::Grouping, ::AbstractVector) @ MixedModels ~/.julia/packages/MixedModels/ezbpk/src/grouping.jl:32 StatsModels.ContrastsMatrix(!Matched::StatsModels.FullDummyCoding, ::AbstractVector{T}) where T @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:283 ... Stacktrace: [1] StatsModels.ContrastsMatrix(contrasts::DummyCoding, levels::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/contrasts.jl:205 [2] concrete_term(t::Term, xs::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, contrasts::DummyCoding) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:212 [3] concrete_term @ ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:206 [inlined] [4] concrete_term(t::Term, xs::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, ::Nothing) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:205 [5] concrete_term(t::Term, dt::@NamedTuple{Cost::Vector{Int64}, Claims::Vector{Int64}, Insured::Vector{Int64}, Merit::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:184 [6] (::StatsModels.var"#schema##0#schema##1"{@NamedTuple{Cost::Vector{Int64}, Claims::Vector{Int64}, Insured::Vector{Int64}, Merit::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}})(t::Term) @ StatsModels ./none:-1 [7] Dict{Term, AbstractTerm}(kv::Base.Generator{Vector{Term}, StatsModels.var"#schema##0#schema##1"{@NamedTuple{Cost::Vector{Int64}, Claims::Vector{Int64}, Insured::Vector{Int64}, Merit::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, Dict{Symbol, Any}}}) @ Base ./dict.jl:90 [8] schema(f::FormulaTerm{FunctionTerm{typeof(/), var"#18#19", (:Cost, :Claims)}, Tuple{Term, Term}}, data::@NamedTuple{Cost::Vector{Int64}, Claims::Vector{Int64}, Insured::Vector{Int64}, Merit::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}}, hints::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/schema.jl:126 [9] ModelFrame(f::FormulaTerm{FunctionTerm{typeof(/), var"#18#19", (:Cost, :Claims)}, Tuple{Term, Term}}, data::@NamedTuple{Merit::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, Class::CategoricalVector{Int64, UInt32, Int64, CategoricalValue{Int64, UInt32}, Union{}}, Insured::Vector{Int64}, Premium::Vector{Int64}, Claims::Vector{Int64}, Cost::Vector{Int64}}; model::Type{LinearModel}, contrasts::Dict{Symbol, Any}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/modelframe.jl:83 [10] fit(::Type{LinearModel}, f::FormulaTerm{FunctionTerm{typeof(/), var"#18#19", (:Cost, :Claims)}, Tuple{Term, Term}}, data::DataFrame, args::Nothing; contrasts::Dict{Symbol, Any}, kwargs::@Kwargs{wts::Vector{Float64}}) @ StatsModels ~/.julia/packages/StatsModels/fK0P3/src/statsmodel.jl:85 [11] nestedmodels(::Type{LinearModel}, formula::FormulaTerm{FunctionTerm{typeof(/), var"#18#19", (:Cost, :Claims)}, Tuple{Term, Term}}, data::DataFrame; null::Bool, kwargs::@Kwargs{wts::Vector{Float64}}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:314 [12] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:80 [13] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [14] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:111 [inlined] [15] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [16] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:111 [inlined] [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [18] top-level scope @ none:6 [19] eval(m::Module, e::Any) @ Core ./boot.jl:489 [20] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [21] _start() @ Base ./client.jl:550 Test Summary: | Error Total Time LinearModel | 2 2 36.5s Simple linear regression | 1 1 23.7s Linear regression with frequency weights | 1 1 12.7s RNG of the outermost testset: Random.Xoshiro(0xff3ecc9a4dc9ee08, 0xf1be0eb19196a336, 0x6cfae9a792e9b834, 0x24f6e79a23fc0bc0, 0xf81fde2bdd02c2ee) ERROR: LoadError: Some tests did not pass: 0 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:79 Testing failed after 632.81s ERROR: LoadError: Package MixedAnova errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1027.13s: package tests unexpectedly errored