Package evaluation to test MINDFul on Julia 1.12.4 (422f456051*) started at 2026-01-29T04:47:26.902 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.06s ################################################################################ # Installation # Installing MINDFul... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [437ce7a4] + MINDFul v0.2.2 Updating `~/.julia/environments/v1.12/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [ec485272] + ArnoldiMethod v0.4.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [5789e2e9] + FileIO v1.17.1 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [c8e1da08] + IterTools v1.10.0 ⌅ [033835bb] + JLD2 v0.4.55 [437ce7a4] + MINDFul v0.2.2 [1914dd2f] + MacroTools v0.5.16 ⌅ [626554b9] + MetaGraphs v0.7.2 ⌅ [fa8bd995] + MetaGraphsNext v0.5.0 [03c36417] + NestedGraphs v0.2.3 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [3bb67fe8] + TranscodingStreams v0.11.3 [1986cc42] + Unitful v1.27.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.53s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ expected package `NestedGraphsIO [4bcdce80]` to be registered │ Stacktrace: │ [1] pkgerror(msg::String) │ @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 │ [2] check_registered(registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1669 │ [3] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1996 │ [4] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:1974 [inlined] │ [5] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:436 │ [6] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:406 [inlined] │ [7] up │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:174 [inlined] │ [8] #resolve#167 │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:442 [inlined] │ [9] resolve │ @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:441 [inlined] │ [10] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:83 │ [11] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:9 │ [12] (::var"#10#11")() │ @ Main /PkgEval.jl/scripts/precompile.jl:21 │ [13] capture_pkg_output(f::var"#10#11"; suppress::Bool) │ @ Main /PkgEval.jl/scripts/common.jl:55 │ [14] suppress_pkg_output(f::Function) │ @ Main /PkgEval.jl/scripts/common.jl:35 │ [15] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:19 │ [16] include(mod::Module, _path::String) │ @ Base ./Base.jl:306 │ [17] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:317 │ [18] _start() │ @ Base ./client.jl:550 └ @ Main /PkgEval.jl/scripts/precompile.jl:24 Activating project at `~/.julia/environments/v1.12` Precompiling package dependencies... Precompiling packages... 19023.1 ms ✓ NestedGraphs → NestedGraphsMetaGraphsNextExt 18104.2 ms ✓ NestedGraphs → NestedGraphsMetaGraphsExt 14925.1 ms ✓ MINDFul 3 dependencies successfully precompiled in 54 seconds. 60 already precompiled. Precompilation completed after 66.37s ################################################################################ # Testing # Testing MINDFul Cloning git-repo `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl` Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating git-repo `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl` Updating `/tmp/jl_Ao4Zkp/Project.toml` [aa1b3936] ↑ GraphIO v0.7.0 ⇒ v0.7.1 [86223c79] ↑ Graphs v1.8.0 ⇒ v1.13.4 [437ce7a4] ~ MINDFul v0.2.1 `~/.julia/packages/MINDFul/y0RF0` ⇒ v0.2.2 `~/.julia/packages/MINDFul/y0RF0` [03c36417] ↑ NestedGraphs v0.2.0 ⇒ v0.2.3 [4bcdce80] ~ NestedGraphsIO v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` ⇒ v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` [98d24dd4] ↑ TestSetExtensions v2.0.0 ⇒ v3.0.0 [1986cc42] ↑ Unitful v1.14.0 ⇒ v1.27.0 [56ddb016] ~ Logging ⇒ v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_Ao4Zkp/Manifest.toml` [1520ce14] ↑ AbstractTrees v0.4.4 ⇒ v0.4.5 [ec485272] ↑ ArnoldiMethod v0.2.0 ⇒ v0.4.0 [34da2185] - Compat v4.7.0 [187b0558] - ConstructionBase v1.5.2 [864edb3b] ↑ DataStructures v0.18.13 ⇒ v0.19.3 [b4f34e82] ↑ Distances v0.10.8 ⇒ v0.10.12 [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.5 [8f5d6c58] ↑ EzXML v1.1.0 ⇒ v1.2.3 [5789e2e9] ↑ FileIO v1.16.1 ⇒ v1.17.1 [aa1b3936] ↑ GraphIO v0.7.0 ⇒ v0.7.1 [86223c79] ↑ Graphs v1.8.0 ⇒ v1.13.4 [d25df0c9] ↑ Inflate v0.1.3 ⇒ v0.1.5 [c8e1da08] ↑ IterTools v1.8.0 ⇒ v1.10.0 ⌅ [033835bb] ↑ JLD2 v0.4.31 ⇒ v0.4.55 [692b3bcd] ↑ JLLWrappers v1.4.1 ⇒ v1.7.1 [437ce7a4] ~ MINDFul v0.2.1 `~/.julia/packages/MINDFul/y0RF0` ⇒ v0.2.2 `~/.julia/packages/MINDFul/y0RF0` [1914dd2f] ↑ MacroTools v0.5.10 ⇒ v0.5.16 [03c36417] ↑ NestedGraphs v0.2.0 ⇒ v0.2.3 [4bcdce80] ~ NestedGraphsIO v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` ⇒ v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` [bac558e1] ↑ OrderedCollections v1.6.0 ⇒ v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] ↑ Preferences v1.4.0 ⇒ v1.5.1 [189a3867] - Reexport v1.2.2 [ae029012] ↑ Requires v1.3.0 ⇒ v1.3.1 [699a6c99] ↑ SimpleTraits v0.9.4 ⇒ v0.9.5 [90137ffa] ↑ StaticArrays v1.5.26 ⇒ v1.9.16 [1e83bf80] ↑ StaticArraysCore v1.4.0 ⇒ v1.4.4 [10745b16] ↑ Statistics v1.9.0 ⇒ v1.11.1 [82ae8749] ↑ StatsAPI v1.6.0 ⇒ v1.8.0 [98d24dd4] ↑ TestSetExtensions v2.0.0 ⇒ v3.0.0 [3bb67fe8] ↑ TranscodingStreams v0.9.13 ⇒ v0.11.3 [1986cc42] ↑ Unitful v1.14.0 ⇒ v1.27.0 [94ce4f54] ↑ Libiconv_jll v1.16.1+2 ⇒ v1.18.0+0 [c8ffd9c3] - MbedTLS_jll v2.28.2+0 [02c8fc9c] ↑ XML2_jll v2.10.3+0 ⇒ v2.15.1+0 [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2 [56f22d72] ~ Artifacts ⇒ v1.11.0 [2a0f44e3] ~ Base64 ⇒ v1.11.0 [ade2ca70] ~ Dates ⇒ v1.11.0 [8ba89e20] ~ Distributed ⇒ v1.11.0 [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0 [7b1f6079] ~ FileWatching ⇒ v1.11.0 [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] ↑ LibCURL v0.6.3 ⇒ v0.6.4 [76f85450] ~ LibGit2 ⇒ v1.11.0 [8f399da3] ~ Libdl ⇒ v1.11.0 [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0 [56ddb016] ~ Logging ⇒ v1.11.0 [d6f4376e] ~ Markdown ⇒ v1.11.0 [a63ad114] ~ Mmap ⇒ v1.11.0 [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0 [44cfe95a] ↑ Pkg v1.9.0 ⇒ v1.12.1 [de0858da] ~ Printf ⇒ v1.11.0 [3fa0cd96] - REPL [9a3f8284] ~ Random ⇒ v1.11.0 [9e88b42a] ~ Serialization ⇒ v1.11.0 [1a1011a3] - SharedArrays [6462fe0b] ~ Sockets ⇒ v1.11.0 [2f01184e] ~ SparseArrays ⇒ v1.12.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] ~ UUIDs ⇒ v1.11.0 [4ec0a83e] ~ Unicode ⇒ v1.11.0 [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.2+0 ⇒ v1.3.0+1 [deac9b47] ↑ LibCURL_jll v7.84.0+0 ⇒ v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] ↑ LibSSH2_jll v1.10.2+0 ⇒ v1.11.3+1 [14a3606d] ↑ MozillaCACerts_jll v2022.10.11 ⇒ v2025.11.4 [4536629a] ↑ OpenBLAS_jll v0.3.21+4 ⇒ v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] ↑ SuiteSparse_jll v5.10.1+6 ⇒ v7.8.3+2 [83775a58] ↑ Zlib_jll v1.2.13+0 ⇒ v1.3.1+2 [8e850b90] ↑ libblastrampoline_jll v5.7.0+0 ⇒ v5.15.0+0 [8e850ede] ↑ nghttp2_jll v1.48.0+0 ⇒ v1.64.0+1 [3f19e933] ↑ p7zip_jll v17.4.0+0 ⇒ v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_Ao4Zkp/Project.toml` [aa1b3936] GraphIO v0.7.1 [86223c79] Graphs v1.13.4 [437ce7a4] MINDFul v0.2.2 `~/.julia/packages/MINDFul/y0RF0` ⌅ [626554b9] MetaGraphs v0.7.2 ⌅ [fa8bd995] MetaGraphsNext v0.5.0 [03c36417] NestedGraphs v0.2.3 [4bcdce80] NestedGraphsIO v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` [98d24dd4] TestSetExtensions v3.0.0 [1986cc42] Unitful v1.27.0 [56ddb016] Logging v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Ao4Zkp/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [ec485272] ArnoldiMethod v0.4.0 [864edb3b] DataStructures v0.19.3 [ab62b9b5] DeepDiffs v1.2.0 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [8f5d6c58] EzXML v1.2.3 [5789e2e9] FileIO v1.17.1 [aa1b3936] GraphIO v0.7.1 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [c8e1da08] IterTools v1.10.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 [437ce7a4] MINDFul v0.2.2 `~/.julia/packages/MINDFul/y0RF0` [1914dd2f] MacroTools v0.5.16 ⌅ [626554b9] MetaGraphs v0.7.2 ⌅ [fa8bd995] MetaGraphsNext v0.5.0 [03c36417] NestedGraphs v0.2.3 [4bcdce80] NestedGraphsIO v0.1.0 `https://github.com/UniStuttgart-IKR/NestedGraphsIO.jl#main` [bac558e1] OrderedCollections v1.8.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [98d24dd4] TestSetExtensions v3.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [1986cc42] Unitful v1.27.0 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.15.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 9647.5 ms ✓ GraphIO 1 dependency successfully precompiled in 11 seconds. 28 already precompiled. Precompiling packages... 7997.5 ms ✓ GraphIO → GraphIOXML 10006.3 ms ✓ NestedGraphsIO 2 dependencies successfully precompiled in 19 seconds. 60 already precompiled. ERROR: LoadError: UndefVarError: `@includetests` not defined in `Main` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [2] top-level scope @ none:6 [3] eval(m::Module, e::Any) @ Core ./boot.jl:489 [4] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [5] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/MINDFul/y0RF0/test/runtests.jl:17 in expression starting at /home/pkgeval/.julia/packages/MINDFul/y0RF0/test/runtests.jl:16 Testing failed after 55.3s ERROR: LoadError: Package MINDFul errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 178.18s: package tests unexpectedly errored