Package evaluation to test JolinPluto on Julia 1.12.4 (422f456051*) started at 2026-01-29T07:50:27.044 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.63s ################################################################################ # Installation # Installing JolinPluto... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [5b0b4ef8] + JolinPluto v0.1.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [6e696c72] + AbstractPlutoDingetjes v1.3.2 [d1d4a3ce] + BitFlags v0.1.9 [944b1d66] + CodecZlib v0.7.8 ⌅ [a80b9123] + CommonMark v0.8.16 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [79afa230] + Continuables v1.0.3 [a8cc5b0e] + Crayons v4.1.1 [83eed652] + DataTypesBasic v2.0.3 [460bff9d] + ExceptionUnwrapping v0.1.11 [c5caad1f] + ExprParsers v1.2.3 [8f5d6c58] + EzXML v1.2.3 [d7ba0133] + Git v1.5.0 [cd3eb016] + HTTP v1.10.19 ⌅ [ac1192a8] + HypertextLiteral v0.9.5 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [0f8b85d8] + JSON3 v1.14.3 [d850fbd6] + JWTs v0.3.2 [5b0b4ef8] + JolinPluto v0.1.0 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [9b3bf0c4] + ProxyInterfaces v1.1.1 [777ac1f9] + SimpleBufferStream v1.2.0 [a3ae8450] + SimpleMatch v1.1.0 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.2 [1c621080] + TestItems v1.0.0 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.13 [5c2747f8] + URIs v1.6.1 [2e619515] + Expat_jll v2.7.3+0 [020c3dae] + Git_LFS_jll v3.7.0+0 [f8c6e375] + Git_jll v2.52.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [9bd350c2] + OpenSSH_jll v10.2.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 7.12s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 21760.0 ms ✓ JolinPluto 138003.3 ms ✓ JolinPluto → PythonCallExt 355571.2 ms ✓ JolinPluto → RCallExt 3 dependencies successfully precompiled in 519 seconds. 146 already precompiled. 1 dependency had output during precompilation: ┌ JolinPluto → PythonCallExt │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Resolving changes │ + libstdcxx │ + libstdcxx-ng │ + openssl │ + python │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_N9Xink/.CondaPkg │ ✔ Created /tmp/jl_N9Xink/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_N9Xink/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ libstdcxx = ">=3.4,<15.0" │ │ libstdcxx-ng = ">=3.4,<15.0" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "strict" │ └ description = "automatically generated by CondaPkg.jl" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_N9Xink/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ Precompilation completed after 629.13s ################################################################################ # Testing # Testing JolinPluto Status `/tmp/jl_o1Vk1o/Project.toml` [6e696c72] AbstractPlutoDingetjes v1.3.2 [4c88cf16] Aqua v0.8.14 ⌅ [a80b9123] CommonMark v0.8.16 [992eb4ea] CondaPkg v0.2.33 [79afa230] Continuables v1.0.3 [e30172f5] Documenter v1.16.1 [8f5d6c58] EzXML v1.2.3 [d7ba0133] Git v1.5.0 [cd3eb016] HTTP v1.10.19 ⌅ [ac1192a8] HypertextLiteral v0.9.5 [0f8b85d8] JSON3 v1.14.3 [d850fbd6] JWTs v0.3.2 [5b0b4ef8] JolinPluto v0.1.0 [21216c6a] Preferences v1.5.1 [6099a3de] PythonCall v0.9.31 [6f49c342] RCall v0.14.11 [f8b46487] TestItemRunner v1.1.4 [1c621080] TestItems v1.0.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8f399da3] Libdl v1.11.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 Status `/tmp/jl_o1Vk1o/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [6e696c72] AbstractPlutoDingetjes v1.3.2 [1520ce14] AbstractTrees v0.4.5 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [d1d4a3ce] BitFlags v0.1.9 [324d7699] CategoricalArrays v1.0.2 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [8f4d0f93] Conda v1.10.3 [992eb4ea] CondaPkg v0.2.33 [79afa230] Continuables v1.0.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [83eed652] DataTypesBasic v2.0.3 [e2d170a0] DataValueInterfaces v1.0.0 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [460bff9d] ExceptionUnwrapping v0.1.11 [c5caad1f] ExprParsers v1.2.3 [8f5d6c58] EzXML v1.2.3 [d7ba0133] Git v1.5.0 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [ac1192a8] HypertextLiteral v0.9.5 [b5f81e59] IOCapture v1.0.0 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [d850fbd6] JWTs v0.3.2 [5b0b4ef8] JolinPluto v0.1.0 [b964fa9f] LaTeXStrings v1.4.0 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [9b3bf0c4] ProxyInterfaces v1.1.1 [43287f4e] PtrArrays v1.3.0 [6099a3de] PythonCall v0.9.31 [6f49c342] RCall v0.14.11 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [1277b4bf] ShiftedArrays v2.0.0 [777ac1f9] SimpleBufferStream v1.2.0 [a3ae8450] SimpleMatch v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [3eaba693] StatsModels v0.7.8 [892a3eda] StringManipulation v0.4.2 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f8b46487] TestItemRunner v1.1.4 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [5c2747f8] URIs v1.6.1 [e17b2a0c] UnsafePointers v1.0.0 [81def892] VersionParsing v1.3.0 [1b915085] WinReg v1.0.0 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [94ce4f54] Libiconv_jll v1.18.0+0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.15.1+0 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 83488.2 ms ✓ Documenter 1 dependency successfully precompiled in 84 seconds. 53 already precompiled. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Doctests: JolinPluto | 1 1 1m07.2s CondaPkg Found dependencies: /tmp/jl_o1Vk1o/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Resolving changes + libstdcxx + libstdcxx-ng + openssl + python + r CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_o1Vk1o/.CondaPkg ✔ Created /tmp/jl_o1Vk1o/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_o1Vk1o/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<15.0" │ libstdcxx-ng = ">=3.4,<15.0" │ r = "*" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_o1Vk1o/.CondaPkg/pixi.toml ✔ The default environment has been installed. Precompiling packages... 1224.0 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling packages... 1353.4 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1 dependency successfully precompiled in 1 seconds. 19 already precompiled. Precompiling packages... 939.7 ms ✓ StructUtils → StructUtilsTablesExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling packages... 24258.8 ms ✓ JolinPluto → RCallExt 1 dependency successfully precompiled in 26 seconds. 127 already precompiled. Precompiling packages... 38938.5 ms ✓ PythonCall 1 dependency successfully precompiled in 39 seconds. 51 already precompiled. Precompiling packages... 26308.1 ms ✓ JolinPluto → PythonCallExt 1 dependency successfully precompiled in 27 seconds. 92 already precompiled. Precompiling packages... 15932.2 ms ✓ PythonCall → CategoricalArraysExt 1 dependency successfully precompiled in 16 seconds. 60 already precompiled. Test Summary: | Pass Total Time Package | 26 26 6m15.2s Testing JolinPluto tests passed Testing completed after 608.95s PkgEval succeeded after 1293.52s