Package evaluation to test GraphIO on Julia 1.12.4 (422f456051*) started at 2026-01-29T01:41:16.864 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.07s ################################################################################ # Installation # Installing GraphIO... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [aa1b3936] + GraphIO v0.7.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [ec485272] + ArnoldiMethod v0.4.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [aa1b3936] + GraphIO v0.7.1 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 1.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 5995.8 ms ✓ GraphIO 3409.1 ms ✓ GraphIO → GraphIOParserCombinator 3617.2 ms ✓ GraphIO → GraphIOXML 3205.1 ms ✓ GraphIO → GraphIOLGCompressedExt 4 dependencies successfully precompiled in 17 seconds. 66 already precompiled. Precompilation completed after 35.92s ################################################################################ # Testing # Testing GraphIO Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_r9MiPM/Project.toml` [4c88cf16] + Aqua v0.8.14 [944b1d66] + CodecZlib v0.7.8 [8f5d6c58] + EzXML v1.2.3 [aa1b3936] + GraphIO v0.7.1 ⌃ [86223c79] ↓ Graphs v1.13.4 ⇒ v1.13.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [fae87a5f] + ParserCombinator v2.2.1 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_r9MiPM/Manifest.toml` [4c88cf16] + Aqua v0.8.14 [15f4f7f2] + AutoHashEquals v2.2.0 [00ebfdb7] + CSTParser v3.4.3 [944b1d66] + CodecZlib v0.7.8 ⌅ [a80b9123] + CommonMark v0.8.16 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 ⌅ [864edb3b] ↓ DataStructures v0.19.3 ⇒ v0.18.22 [8f5d6c58] + EzXML v1.2.3 [c27321d9] + Glob v1.4.0 [aa1b3936] + GraphIO v0.7.1 ⌃ [86223c79] ↓ Graphs v1.13.4 ⇒ v1.13.1 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [98e50ef6] + JuliaFormatter v1.0.62 [fae87a5f] + ParserCombinator v2.2.1 [0796e94c] + Tokenize v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [94ce4f54] + Libiconv_jll v1.18.0+0 [02c8fc9c] + XML2_jll v2.15.1+0 [0dad84c5] + ArgTools v1.1.2 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_r9MiPM/Project.toml` [4c88cf16] Aqua v0.8.14 [944b1d66] CodecZlib v0.7.8 [8bb1440f] DelimitedFiles v1.9.1 [8f5d6c58] EzXML v1.2.3 [aa1b3936] GraphIO v0.7.1 ⌃ [86223c79] Graphs v1.13.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [fae87a5f] ParserCombinator v2.2.1 [699a6c99] SimpleTraits v0.9.5 [8dfed614] Test v1.11.0 Status `/tmp/jl_r9MiPM/Manifest.toml` [4c88cf16] Aqua v0.8.14 [ec485272] ArnoldiMethod v0.4.0 [15f4f7f2] AutoHashEquals v2.2.0 [00ebfdb7] CSTParser v3.4.3 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.8.16 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 ⌅ [864edb3b] DataStructures v0.18.22 [8bb1440f] DelimitedFiles v1.9.1 [8f5d6c58] EzXML v1.2.3 [c27321d9] Glob v1.4.0 [aa1b3936] GraphIO v0.7.1 ⌃ [86223c79] Graphs v1.13.1 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 ⌅ [98e50ef6] JuliaFormatter v1.0.62 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [fae87a5f] ParserCombinator v2.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [0796e94c] Tokenize v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [94ce4f54] Libiconv_jll v1.18.0+0 [02c8fc9c] XML2_jll v2.15.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 51342.1 ms ✓ JuliaFormatter 1 dependency successfully precompiled in 52 seconds. 21 already precompiled. ┌ Error: Unexpected error: /tmp/jl_GHkNEBubA9/done.log was not created, but precompilation exited └ @ Aqua ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:118 Persistent tasks: Test Failed at /home/pkgeval/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 Expression: !(has_persistent_tasks(package; kwargs...)) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] test_persistent_tasks(package::Base.PkgId; broken::Bool, kwargs::@Kwargs{}) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:38 [3] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:34 [inlined] [4] #test_persistent_tasks#57 @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:43 [inlined] [5] test_persistent_tasks @ ~/.julia/packages/Aqua/MCcFg/src/persistent_tasks.jl:42 [inlined] [6] macro expansion @ ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] test_all(testtarget::Module; ambiguities::Bool, unbound_args::Bool, undefined_exports::Bool, project_extras::Bool, stale_deps::Bool, deps_compat::Bool, piracies::Bool, persistent_tasks::Bool, undocumented_names::Bool) @ Aqua ~/.julia/packages/Aqua/MCcFg/src/Aqua.jl:109 Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/ext/GraphIOLGCompressedExt.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/ext/GraphIOParserCombinator.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/ext/GraphIOXML.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/CDF/Cdf.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/DOT/Dot.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/Edgelist/Edgelist.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/Edgelist/IntEdgeList.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/GEXF/Gexf.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/GML/Gml.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/Graph6/Graph6.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/GraphIO.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/GraphML/GraphML.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/LGCompressed/LGCompressed.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/src/NET/Net.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/CDF/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/DOT/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/Edgelist/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/GEXF/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/GML/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/Graph6/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/GraphML/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/LGCompressed/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/NET/runtests.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/graphio.jl Formatting /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/runtests.jl Well done! ✨ 🍰 ✨ ┌ Warning: Skipping unknown XML element 'warnelement' - further warnings will be suppressed └ @ GraphIOXML ~/.julia/packages/GraphIO/yl1V9/ext/GraphIOXML.jl:139 ┌ Warning: Skipping unknown node 'warnnode' - further warnings will be suppressed └ @ GraphIOXML ~/.julia/packages/GraphIO/yl1V9/ext/GraphIOXML.jl:68 Test Summary: | Pass Fail Total Time GraphIO | 163 1 164 2m25.5s Code quality | 10 1 11 49.8s Method ambiguity | 1 1 8.2s Unbound type parameters | 1 1 0.1s Undefined exports | 1 1 0.0s Compare Project.toml and test/Project.toml | 1 1 0.0s Stale dependencies | 1 1 6.2s Compat bounds | 4 4 0.7s Piracy | 1 1 0.1s Persistent tasks | 1 1 34.5s Code formatting | 1 1 50.4s CDF | 2 2 3.5s EdgeList | 18 18 2.9s GML | 25 25 5.7s Pajek NET | 19 19 1.2s DOT | 14 14 18.4s GEXF | 6 6 1.1s Graph6 | 17 17 4.1s GraphML | 27 27 4.4s LGCompressed | 24 24 2.6s RNG of the outermost testset: Random.Xoshiro(0x8653fc893de9f77d, 0xa1dfda7939f054b1, 0xc13c153dbf08c966, 0x1916cac74ba82491, 0xe1bf819cb87fe485) ERROR: LoadError: Some tests did not pass: 163 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/GraphIO/yl1V9/test/runtests.jl:16 Testing failed after 238.74s ERROR: LoadError: Package GraphIO errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 301.49s: package has test failures