Package evaluation to test DifferentiableMetabolism on Julia 1.12.4 (422f456051*) started at 2026-01-29T09:09:41.354 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 10.5s ################################################################################ # Installation # Installing DifferentiableMetabolism... Resolving package versions... Installed IrrationalConstants ─────── v0.2.6 Installed StableRNGs ──────────────── v1.0.4 Installed JSON3 ───────────────────── v1.14.3 Installed DiffRules ───────────────── v1.15.1 Installed AbstractFBCModels ───────── v1.3.0 Installed Preferences ─────────────── v1.5.1 Installed JSON ────────────────────── v1.4.0 Installed MutableArithmetics ──────── v1.6.7 Installed Bzip2_jll ───────────────── v1.0.9+0 Installed CodecBzip2 ──────────────── v0.8.5 Installed RuntimeGeneratedFunctions ─ v0.5.16 Installed BenchmarkTools ──────────── v1.6.3 Installed SpecialFunctions ────────── v2.6.1 Installed Parsers ─────────────────── v2.8.3 Installed DiffResults ─────────────── v1.1.0 Installed StaticArraysCore ────────── v1.4.4 Installed JLLWrappers ─────────────── v1.7.1 Installed NaNMath ─────────────────── v1.1.3 Installed StaticArrays ────────────── v1.9.16 Installed PrecompileTools ─────────── v1.3.3 Installed ConstructionBase ────────── v1.6.0 Installed OrderedCollections ──────── v1.8.1 Installed TranscodingStreams ──────── v0.11.3 Installed ForwardDiff ─────────────── v1.3.1 Installed Statistics ──────────────── v1.11.1 Installed FastDifferentiation ─────── v0.4.5 Installed JuMP ────────────────────── v1.29.4 Installed COBREXA ─────────────────── v2.9.1 Installed DifferentiableMetabolism ── v0.5.0 Installed ConstraintTrees ─────────── v1.11.0 Installed CommonSubexpressions ────── v0.3.1 Installed DataStructures ──────────── v0.18.22 Installed ExprTools ───────────────── v0.1.10 Installed MacroTools ──────────────── v0.5.16 Installed OpenSpecFun_jll ─────────── v0.5.6+0 Installed CodecZlib ───────────────── v0.7.8 Installed Compat ──────────────────── v4.18.1 Installed LogExpFunctions ─────────── v0.3.29 Installed StructUtils ─────────────── v2.6.2 Installed DocStringExtensions ─────── v0.9.5 Installed StructTypes ─────────────── v1.11.0 Installed MathOptInterface ────────── v1.48.0 Installing 2 artifacts Installed artifact OpenSpecFun 194.9 KiB Installed artifact Bzip2 503.5 KiB Updating `~/.julia/environments/v1.12/Project.toml` [9677e053] + DifferentiableMetabolism v0.5.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [5a4f3dfa] + AbstractFBCModels v1.3.0 [6e4b80f9] + BenchmarkTools v1.6.3 [babc4406] + COBREXA v2.9.1 [523fee87] + CodecBzip2 v0.8.5 [944b1d66] + CodecZlib v0.7.8 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [5515826b] + ConstraintTrees v1.11.0 [187b0558] + ConstructionBase v1.6.0 ⌅ [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [9677e053] + DifferentiableMetabolism v0.5.0 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [eb9bf01b] + FastDifferentiation v0.4.5 [f6369f11] + ForwardDiff v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [0f8b85d8] + JSON3 v1.14.3 [4076af6c] + JuMP v1.29.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.48.0 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [856f2bd8] + StructTypes v1.11.0 [ec057cc2] + StructUtils v2.6.2 [3bb67fe8] + TranscodingStreams v0.11.3 [6e34b625] + Bzip2_jll v1.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4792.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 1067.6 ms ✓ RangeArrays 851.4 ms ✓ MuladdMacro 9123.8 ms ✓ BaseDirs 1121.1 ms ✓ AbstractFFTs 935.6 ms ✓ LaTeXStrings 895.8 ms ✓ IndirectArrays 855.6 ms ✓ PolygonOps 918.2 ms ✓ ExprTools 775.8 ms ✓ IteratorInterfaceExtensions 938.9 ms ✓ TensorCore 944.6 ms ✓ StatsAPI 977.8 ms ✓ Contour 3908.3 ms ✓ CEnum 1806.1 ms ✓ OffsetArrays 981.3 ms ✓ TriplotBase 2845.0 ms ✓ Format 2090.2 ms ✓ FillArrays 885.9 ms ✓ IntegerMathUtils 992.5 ms ✓ InverseFunctions 1173.7 ms ✓ Statistics 1230.5 ms ✓ IterTools 8251.4 ms ✓ MacroTools 4604.6 ms ✓ Grisu 4573.4 ms ✓ OrderedCollections 4090.5 ms ✓ Observables 1259.4 ms ✓ Requires 906.6 ms ✓ DataValueInterfaces 921.3 ms ✓ EnumX 965.4 ms ✓ StableRNGs 796.3 ms ✓ Reexport 1166.3 ms ✓ DocStringExtensions 1125.2 ms ✓ AbstractTrees 5425.8 ms ✓ IrrationalConstants 1096.1 ms ✓ IntervalSets 963.8 ms ✓ RoundingEmulator 1050.1 ms ✓ Extents 831.2 ms ✓ PtrArrays 1328.4 ms ✓ TranscodingStreams 3100.2 ms ✓ AdaptivePredicates 4278.9 ms ✓ NaNMath 3992.7 ms ✓ LazyModules 1070.6 ms ✓ Inflate 4301.4 ms ✓ ConstructionBase 892.8 ms ✓ DataAPI 871.4 ms ✓ FastClosures 1055.9 ms ✓ StaticArraysCore 1077.5 ms ✓ MappedArrays 1723.0 ms ✓ GenericLinearAlgebra 16445.7 ms ✓ Krylov 2044.1 ms ✓ ProgressMeter 1970.0 ms ✓ AMD 1935.3 ms ✓ PDMats 1482.9 ms ✓ WoodburyMatrices 4807.1 ms ✓ StructTypes 46454.0 ms ✓ Unitful 943.7 ms ✓ Scratch 1214.1 ms ✓ Preferences 4331.1 ms ✓ Compat 3457.3 ms ✓ UnicodeFun 12693.0 ms ✓ MutableArithmetics 4738.1 ms ✓ PkgVersion 5630.1 ms ✓ QPSReader 4420.2 ms ✓ AbstractFFTs → AbstractFFTsTestExt 4033.8 ms ✓ RuntimeGeneratedFunctions 6935.7 ms ✓ TimerOutputs 853.6 ms ✓ TableTraits 1019.8 ms ✓ StackViews 998.2 ms ✓ PaddedViews 1550.8 ms ✓ FillArrays → FillArraysSparseArraysExt 1240.2 ms ✓ Primes 1880.8 ms ✓ InverseFunctions → InverseFunctionsTestExt 929.6 ms ✓ InverseFunctions → InverseFunctionsDatesExt 1588.3 ms ✓ SignedDistanceFields 7247.8 ms ✓ FixedPointNumbers 1375.3 ms ✓ Statistics → SparseArraysExt 954.9 ms ✓ FillArrays → FillArraysStatisticsExt 1761.3 ms ✓ CommonSubexpressions 3428.3 ms ✓ SimpleTraits 985.3 ms ✓ Showoff 1180.2 ms ✓ Ratios 1074.9 ms ✓ Adapt 9650.5 ms ✓ FileIO 1597.2 ms ✓ PikaParser 4556.9 ms ✓ AbstractFBCModels 1546.4 ms ✓ LogExpFunctions 812.8 ms ✓ IntervalSets → IntervalSetsRandomExt 803.1 ms ✓ IntervalSets → IntervalSetsStatisticsExt 964.4 ms ✓ AliasTables 951.3 ms ✓ CodecZlib 811.5 ms ✓ ConstructionBase → ConstructionBaseIntervalSetsExt 821.9 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 3753.0 ms ✓ Missings 1018.1 ms ✓ DiffResults 4409.3 ms ✓ LDLFactorizations 1334.9 ms ✓ QDLDL 1400.6 ms ✓ FillArrays → FillArraysPDMatsExt 1454.0 ms ✓ AxisAlgorithms 1888.9 ms ✓ Unitful → ConstructionBaseUnitfulExt 1867.3 ms ✓ Unitful → NaNMathExt 1926.5 ms ✓ Unitful → InverseFunctionsUnitfulExt 2190.8 ms ✓ Unitful → PrintfExt 1153.8 ms ✓ RelocatableFolders 1144.2 ms ✓ SnoopPrecompile 1224.2 ms ✓ JLLWrappers 920.8 ms ✓ PrecompileTools 4680.0 ms ✓ ComputePipeline 884.8 ms ✓ Compat → CompatLinearAlgebraExt 4244.9 ms ✓ LinearOperators 4714.0 ms ✓ Tables 1025.4 ms ✓ MosaicViews 3037.9 ms ✓ FFTA 5372.0 ms ✓ ColorTypes 904.9 ms ✓ Ratios → RatiosFixedPointNumbersExt 1242.4 ms ✓ Adapt → AdaptSparseArraysExt 871.1 ms ✓ OffsetArrays → OffsetArraysAdaptExt 802.9 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 1596.3 ms ✓ AxisArrays 1412.6 ms ✓ Graphite2_jll 1405.8 ms ✓ Libmount_jll 1406.2 ms ✓ LLVMOpenMP_jll 1431.5 ms ✓ Bzip2_jll 1467.7 ms ✓ Rmath_jll 1423.2 ms ✓ Xorg_libXau_jll 1447.1 ms ✓ libpng_jll 1450.9 ms ✓ libfdk_aac_jll 1459.0 ms ✓ Imath_jll 1430.5 ms ✓ Giflib_jll 1449.1 ms ✓ LAME_jll 1458.4 ms ✓ LERC_jll 1421.2 ms ✓ EarCut_jll 1425.9 ms ✓ CRlibm_jll 1489.6 ms ✓ JpegTurbo_jll 1468.8 ms ✓ XZ_jll 1415.3 ms ✓ Ogg_jll 1418.8 ms ✓ Xorg_libXdmcp_jll 1459.2 ms ✓ x265_jll 1422.5 ms ✓ x264_jll 1434.2 ms ✓ libaom_jll 1469.5 ms ✓ Zstd_jll 1414.2 ms ✓ Expat_jll 1497.4 ms ✓ LZO_jll 1400.1 ms ✓ Opus_jll 1233.6 ms ✓ Xorg_xtrans_jll 1400.5 ms ✓ Libiconv_jll 1364.2 ms ✓ Libffi_jll 1372.3 ms ✓ isoband_jll 1450.7 ms ✓ OpenSpecFun_jll 1432.5 ms ✓ Libuuid_jll 1372.4 ms ✓ FriBidi_jll 1455.3 ms ✓ OpenBLASConsistentFPCSR_jll 19167.4 ms ✓ StaticArrays 21205.0 ms ✓ SIMD 22610.5 ms ✓ Parsers 3993.3 ms ✓ DataStructures 2374.9 ms ✓ FilePathsBase 5232.0 ms ✓ ChainRulesCore 2213.1 ms ✓ LinearOperators → LinearOperatorsLDLFactorizationsExt 4671.7 ms ✓ StructArrays 6563.7 ms ✓ ColorVectorSpace 1181.0 ms ✓ ColorTypes → StyledStringsExt 10163.9 ms ✓ Colors 1414.4 ms ✓ Pixman_jll 1446.2 ms ✓ FreeType2_jll 1003.8 ms ✓ CodecBzip2 1662.2 ms ✓ Rmath 1474.2 ms ✓ OpenEXR_jll 1163.1 ms ✓ CRlibm 1436.6 ms ✓ libsixel_jll 1417.3 ms ✓ libvorbis_jll 1527.1 ms ✓ Xorg_libxcb_jll 1431.4 ms ✓ Libtiff_jll 1457.6 ms ✓ GettextRuntime_jll 842.8 ms ✓ Isoband 5803.5 ms ✓ SpecialFunctions 1379.2 ms ✓ StaticArrays → StaticArraysStatisticsExt 1451.7 ms ✓ FillArrays → FillArraysStaticArraysExt 1402.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1362.7 ms ✓ Adapt → AdaptStaticArraysExt 26555.7 ms ✓ GeometryBasics 26080.3 ms ✓ Automa 18493.7 ms ✓ JSON3 4038.6 ms ✓ JSON 1738.2 ms ✓ SortingAlgorithms 5927.5 ms ✓ QuadGK 3779.3 ms ✓ ConstraintTrees 1377.7 ms ✓ FilePathsBase → FilePathsBaseMmapExt 3351.7 ms ✓ FilePathsBase → FilePathsBaseTestExt 1703.3 ms ✓ FilePaths 4268.3 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 1007.6 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 4047.6 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1583.1 ms ✓ LinearOperators → LinearOperatorsChainRulesCoreExt 4832.7 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 883.1 ms ✓ StructArrays → StructArraysAdaptExt 1408.3 ms ✓ StructArrays → StructArraysSparseArraysExt 4755.8 ms ✓ StructArrays → StructArraysStaticArraysExt 1396.7 ms ✓ StructArrays → StructArraysLinearAlgebraExt 5964.5 ms ✓ QOI 66709.5 ms ✓ TiffImages 3960.4 ms ✓ Graphics 1311.4 ms ✓ Animations 40696.2 ms ✓ ImageCore 8845.2 ms ✓ ColorSchemes 1908.3 ms ✓ FreeType 1576.9 ms ✓ Fontconfig_jll 5646.9 ms ✓ OpenEXR 7980.7 ms ✓ IntervalArithmetic 1488.5 ms ✓ Xorg_libX11_jll 1514.3 ms ✓ Glib_jll 4660.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2254.8 ms ✓ HypergeometricFunctions 1156.7 ms ✓ DiffRules 1141.7 ms ✓ ColorVectorSpace → SpecialFunctionsExt 13272.7 ms ✓ GridLayoutBase 2236.7 ms ✓ Packing 5031.4 ms ✓ ShaderAbstractions 2342.6 ms ✓ BenchmarkTools 5940.8 ms ✓ JSONFBCModels 2640.5 ms ✓ ColorBrewer 7351.7 ms ✓ StatsBase 7259.3 ms ✓ Interpolations 3773.3 ms ✓ ImageBase 6554.0 ms ✓ PNGFiles 10500.0 ms ✓ Sixel 9672.2 ms ✓ JpegTurbo 20537.1 ms ✓ PlotUtils 8009.8 ms ✓ FreeTypeAbstraction 1425.7 ms ✓ IntervalArithmetic → IntervalArithmeticSparseArraysExt 1060.9 ms ✓ IntervalArithmetic → IntervalArithmeticIntervalSetsExt 1437.9 ms ✓ IntervalArithmetic → IntervalArithmeticLinearAlgebraExt 1425.7 ms ✓ Xorg_libXrender_jll 1430.0 ms ✓ Xorg_libXext_jll 6181.9 ms ✓ StatsFuns 10780.8 ms ✓ ForwardDiff 13009.3 ms ✓ FastDifferentiation 941.7 ms ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt 2135.8 ms ✓ PDMats → StatsBaseExt 4461.7 ms ✓ Interpolations → InterpolationsUnitfulExt 7306.2 ms ✓ ImageAxes 32637.5 ms ✓ MathTeXEngine 8684.9 ms ✓ ExactPredicates 1499.9 ms ✓ Libglvnd_jll 1579.9 ms ✓ Cairo_jll 991.7 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3967.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 1760.1 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 2231.8 ms ✓ Unitful → ForwardDiffExt 4029.4 ms ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt 92281.2 ms ✓ MathOptInterface 2647.1 ms ✓ Interpolations → InterpolationsForwardDiffExt 10882.4 ms ✓ Distributions 4477.8 ms ✓ ImageMetadata 14448.2 ms ✓ DelaunayTriangulation 1644.6 ms ✓ libwebp_jll 1557.2 ms ✓ HarfBuzz_jll 53637.9 ms ✓ JuMP 13969.8 ms ✓ Tulip 152979.5 ms ✓ Clarabel 3437.4 ms ✓ Distributions → DistributionsTestExt 6797.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 7245.4 ms ✓ Netpbm 9291.6 ms ✓ WebP 1691.4 ms ✓ libass_jll 1822.6 ms ✓ Pango_jll 16577.0 ms ✓ COBREXA 4605.1 ms ✓ KernelDensity 4673.1 ms ✓ ImageIO 1696.2 ms ✓ FFMPEG_jll 6192.2 ms ✓ Cairo 22947.5 ms ✓ DifferentiableMetabolism 442214.9 ms ✓ Makie 352558.9 ms ✓ CairoMakie 272 dependencies successfully precompiled in 2219 seconds. 41 already precompiled. Precompilation completed after 2260.55s ################################################################################ # Testing # Testing DifferentiableMetabolism Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_sFFGp9/Project.toml` [13f3f980] + CairoMakie v0.15.8 [61c947e1] + Clarabel v0.11.0 [9677e053] + DifferentiableMetabolism v0.5.0 [475c1105] + JSONFBCModels v1.0.1 [6dd1b50a] + Tulip v0.9.8 Updating `/tmp/jl_sFFGp9/Manifest.toml` [14f7f29c] + AMD v0.5.3 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.8 [d360d2e6] + ChainRulesCore v1.26.0 [61c947e1] + Clarabel v0.11.0 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [95dc2771] + ComputePipeline v0.1.6 [d38c429a] + Contour v0.6.3 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.6 [9677e053] + DifferentiableMetabolism v0.5.0 [31c24e10] + Distributions v0.25.123 [4e289a0a] + EnumX v1.0.6 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [b86e33f2] + FFTA v0.3.1 [9aa1b823] + FastClosures v0.3.2 [5789e2e9] + FileIO v1.17.1 [8fc22ac5] + FilePaths v0.9.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [14197337] + GenericLinearAlgebra v0.3.19 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [682c06a0] ↓ JSON v1.4.0 ⇒ v0.21.4 [475c1105] + JSONFBCModels v1.0.1 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.11 [ba0b0d4f] + Krylov v0.10.5 [40e66cde] + LDLFactorizations v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [5c8ed15e] + LinearOperators v2.11.0 [ee78f7c6] + Makie v0.24.8 [dbb5928d] + MappedArrays v0.4.3 [0a4f8689] + MathTeXEngine v0.6.7 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [46d2c3a1] + MuladdMacro v0.2.4 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [90014a1f] + PDMats v0.11.37 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [bfc457fd] + QDLDL v0.4.1 [4b34888f] + QOI v1.0.2 [10f199a5] + QPSReader v0.2.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.1 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.2 [cae243ae] + StackViews v0.1.2 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [09ab397b] + StructArrays v0.7.2 [ec057cc2] - StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [a759f4b9] + TimerOutputs v0.5.29 [981d1d27] + TriplotBase v0.1.0 [6dd1b50a] + Tulip v0.9.8 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.27.0 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.1.0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.1+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [905a6f67] + Imath_jll v3.2.2+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.30+0 [18a262bb] + OpenEXR_jll v3.4.4+0 [91d4177d] + Opus_jll v1.6.0+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.54+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [8bf52ea8] + CRC32c v1.11.0 [3fa0cd96] + REPL v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse [efcefdf7] + PCRE2_jll v10.44.0+1 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_sFFGp9/Project.toml` [5a4f3dfa] AbstractFBCModels v1.3.0 [babc4406] COBREXA v2.9.1 [13f3f980] CairoMakie v0.15.8 [61c947e1] Clarabel v0.11.0 [5515826b] ConstraintTrees v1.11.0 [9677e053] DifferentiableMetabolism v0.5.0 [ffbed154] DocStringExtensions v0.9.5 [eb9bf01b] FastDifferentiation v0.4.5 [475c1105] JSONFBCModels v1.0.1 [4076af6c] JuMP v1.29.4 [6dd1b50a] Tulip v0.9.8 [f43a241f] Downloads v1.7.0 [37e2e46d] LinearAlgebra v1.12.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_sFFGp9/Manifest.toml` [14f7f29c] AMD v0.5.3 [5a4f3dfa] AbstractFBCModels v1.3.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [6e4b80f9] BenchmarkTools v1.6.3 [fa961155] CEnum v0.5.0 [babc4406] COBREXA v2.9.1 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [61c947e1] Clarabel v0.11.0 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [95dc2771] ComputePipeline v0.1.6 [5515826b] ConstraintTrees v1.11.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [9677e053] DifferentiableMetabolism v0.5.0 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.6 [429591f6] ExactPredicates v2.2.9 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [b86e33f2] FFTA v0.3.1 [9aa1b823] FastClosures v0.3.2 [eb9bf01b] FastDifferentiation v0.4.5 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [14197337] GenericLinearAlgebra v0.3.19 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [475c1105] JSONFBCModels v1.0.1 [b835a17e] JpegTurbo v0.1.6 [4076af6c] JuMP v1.29.4 [5ab0869b] KernelDensity v0.6.11 [ba0b0d4f] Krylov v0.10.5 [40e66cde] LDLFactorizations v0.10.1 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [5c8ed15e] LinearOperators v2.11.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [dbb5928d] MappedArrays v0.4.3 [b8f27783] MathOptInterface v1.48.0 [0a4f8689] MathTeXEngine v0.6.7 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [46d2c3a1] MuladdMacro v0.2.4 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [3bbf5609] PikaParser v0.6.1 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [bfc457fd] QDLDL v0.4.1 [4b34888f] QOI v1.0.2 [10f199a5] QPSReader v0.2.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [fdea26ae] SIMD v3.7.2 [6c6a2e73] Scratch v1.3.0 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.1 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [6dd1b50a] Tulip v0.9.8 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.27.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.2.2+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.30+0 [18a262bb] OpenEXR_jll v3.4.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.54+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... ------------------------------------------------------------- Clarabel.jl v0.11.0 - Clever Acronym (c) Paul Goulart University of Oxford, 2022 ------------------------------------------------------------- problem: variables = 6 constraints = 19 nnz(P) = 6 nnz(A) = 27 cones (total) = 2 : Zero = 1, numel = 5 : Nonnegative = 1, numel = 14 settings: linear algebra: direct / qdldl, precision: 64 bit (1 thread) max iter = 200, time limit = Inf, max step = 0.990 tol_feas = 1.0e-08, tol_gap_abs = 1.0e-08, tol_gap_rel = 1.0e-08, static reg : on, ϵ1 = 1.0e-08, ϵ2 = 4.9e-32 dynamic reg: on, ϵ = 1.0e-13, δ = 2.0e-07 iter refine: on, reltol = 1.0e-13, abstol = 1.0e-12, max iter = 10, stop ratio = 5.0 equilibrate: on, min_scale = 1.0e-04, max_scale = 1.0e+04 max iter = 10 iter pcost dcost gap pres dres k/t μ step --------------------------------------------------------------------------------------------- 0 8.1662e+04 -2.1285e+06 2.71e+01 1.72e-01 1.29e-16 1.00e+00 4.10e+05 ------ 1 9.3859e+01 -2.2566e+05 2.41e+03 7.83e-03 2.99e-16 1.13e+04 2.44e+04 9.90e-01 2 1.7010e+01 -1.8788e+04 1.11e+03 6.26e-04 2.05e-16 1.35e+02 2.42e+03 9.03e-01 3 1.4683e+01 -5.1608e+02 3.61e+01 1.83e-05 3.47e-15 2.33e+01 9.30e+01 9.73e-01 4 1.4253e+01 -1.4370e+01 2.01e+00 9.86e-07 5.56e-15 1.25e+00 5.05e+00 9.46e-01 5 1.1230e+01 5.0752e+00 1.21e+00 9.61e-08 4.89e-16 2.62e-01 9.65e-01 9.90e-01 6 1.1008e+01 1.0644e+01 3.42e-02 1.11e-09 6.40e-17 1.09e-02 5.32e-02 9.90e-01 7 1.1000e+01 1.0982e+01 1.68e-03 1.16e-11 7.68e-17 5.39e-04 2.50e-03 9.90e-01 8 1.1000e+01 1.1000e+01 2.14e-05 1.08e-13 5.50e-12 6.88e-06 3.17e-05 9.90e-01 9 1.1000e+01 1.1000e+01 2.15e-07 1.05e-15 1.14e-13 6.91e-08 3.18e-07 9.90e-01 10 1.1000e+01 1.1000e+01 2.15e-09 5.09e-17 1.87e-15 6.91e-10 3.18e-09 9.90e-01 --------------------------------------------------------------------------------------------- Terminated with status = solved solve time = 20.9s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1393 running 1 of 1 signal (10): User defined signal 1 alloc_env at /source/src/subtype.c:317 save_env at /source/src/subtype.c:330 [inlined] forall_exists_subtype at /source/src/subtype.c:1815 local_forall_exists_subtype at /source/src/subtype.c:1638 forall_exists_equal at /source/src/subtype.c:1773 subtype at /source/src/subtype.c:1554 subtype_unionall at /source/src/subtype.c:972 subtype at /source/src/subtype.c:1508 exists_subtype at /source/src/subtype.c:1791 [inlined] forall_exists_subtype at /source/src/subtype.c:1820 ijl_subtype_env at /source/src/subtype.c:2279 subtype_tuple_tail at /source/src/subtype.c:1292 [inlined] subtype_tuple at /source/src/subtype.c:1374 [inlined] subtype at /source/src/subtype.c:1548 exists_subtype at /source/src/subtype.c:1791 [inlined] forall_exists_subtype at /source/src/subtype.c:1820 ijl_types_equal at /source/src/subtype.c:2372 [inlined] ijl_types_equal at /source/src/subtype.c:2319 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4160 jl_restore_package_image_from_stream at /source/src/staticdata.c:4412 ijl_restore_incremental at /source/src/staticdata.c:4494 #_include_from_serialized#867 at ./loading.jl:1302 _include_from_serialized at ./loading.jl:1274 [inlined] #_require_search_from_serialized#883 at ./loading.jl:2102 _require_search_from_serialized at ./loading.jl:2009 [inlined] __require_prelocked at ./loading.jl:2627 _require_prelocked at ./loading.jl:2493 macro expansion at ./loading.jl:2421 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2386 jfptr___require_54039.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 require at ./loading.jl:2362 jfptr_require_53089.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] call_require at /source/src/toplevel.c:494 [inlined] eval_import_path at /source/src/toplevel.c:532 jl_toplevel_eval_flex at /source/src/toplevel.c:903 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d0345096249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./process.jl:685 wait at ./process.jl:686 jfptr_wait_46335.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2553 unknown function (ip: 0x703a219268d3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2493 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2161 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2275 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x703a2191b4fc) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2222 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212 unknown function (ip: 0x703a21913ff9) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2478 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:515 unknown function (ip: 0x703a21913c31) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x703a21909be0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x703a2190913f) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x703a2a0bf249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000703a0fbfc010 Total snapshots: 404. Utilization: 0% ╎404 @Base/client.jl:550 _start() ╎ 404 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 404 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 404 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pat… ╎ 404 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), mo… ╎ 404 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 404 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 404 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 404 @Pkg/src/API.jl:157 test ╎ ╎ 404 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 404 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 404 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 404 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 404 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 404 @Pkg/…erations.jl:2384 test ╎ ╎ ╎ 404 @Pkg/…erations.jl:2478 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 404 @Pkg/…rations.jl:2212 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 404 @Pkg/…rations.jl:2222 #sandbox#182 ╎ ╎ ╎ ╎ 404 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 404 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 404 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 404 @Pkg/…tions.jl:2275 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 404 @Pkg/…tions.jl:2161 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 404 @Pkg/…tions.jl:2308 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 404 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 404 @Pkg/…ions.jl:2493 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 404 @Pkg/…ons.jl:2553 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 404 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 404 @Base/…ss.jl:685 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 404 @Base/…on.jl:141 wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 404 @Base/…sk.jl:1228 wait() 403╎ ╎ ╎ ╎ ╎ ╎ ╎ 404 @Base/…sk.jl:1216 poptask(W::Base.Intru… [1393] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/DifferentiableMetabolism/DNa5J/docs/src/2-differentiate-enzyme-model.jl:29 egal_types at /source/src/builtins.c:180 ijl_types_equal at /source/src/subtype.c:2323 jl_specializations_get_linfo_ at /source/src/gf.c:237 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4204 jl_restore_package_image_from_stream at /source/src/staticdata.c:4412 ijl_restore_incremental at /source/src/staticdata.c:4494 #_include_from_serialized#867 at ./loading.jl:1302 _include_from_serialized at ./loading.jl:1274 [inlined] #_require_search_from_serialized#883 at ./loading.jl:2102 _require_search_from_serialized at ./loading.jl:2009 [inlined] __require_prelocked at ./loading.jl:2627 _require_prelocked at ./loading.jl:2493 macro expansion at ./loading.jl:2421 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2386 jfptr___require_54039.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:900 require at ./loading.jl:2362 jfptr_require_53089.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] call_require at /source/src/toplevel.c:494 [inlined] eval_import_path at /source/src/toplevel.c:532 jl_toplevel_eval_flex at /source/src/toplevel.c:903 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7d0345096249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 103216986 (Pool: 103215585; Big: 1401); GC: 29 PkgEval terminated after 2723.31s: test duration exceeded the time limit