Package evaluation to test CrystalNets on Julia 1.12.4 (422f456051*) started at 2026-01-29T04:56:54.098 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.95s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Installed CrystalNets ─ v1.1.1 Updating `~/.julia/environments/v1.12/Project.toml` [7952bbbe] + CrystalNets v1.1.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.2 [46823bd8] + Chemfiles v0.10.43 [7952bbbe] + CrystalNets v1.1.1 [864edb3b] + DataStructures v0.19.3 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.4 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.1 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.4 [7b2266bf] + PeriodicTable v1.2.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.5 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.7.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Installation completed after 6.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 386908.1 ms ✓ CrystalNets 1 dependency successfully precompiled in 388 seconds. 65 already precompiled. Precompilation completed after 405.06s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_xAYEXB/Project.toml` [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [86223c79] Graphs v1.13.4 [18c5b727] PeriodicGraphs v0.10.4 [90137ffa] StaticArrays v1.9.16 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xAYEXB/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.2 [46823bd8] Chemfiles v0.10.43 [861a8166] Combinatorics v1.1.0 [7952bbbe] CrystalNets v1.1.1 [864edb3b] DataStructures v0.19.3 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.4 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.1 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.4 [7b2266bf] PeriodicTable v1.2.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.5 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.7.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.12.1 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.15.0+0 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: This CIF file contains multiple colliding atoms. Only one atom will be kept per site. [ Warning: Cu atoms suspiciously close to one another(bond length: 0.5503737600000008). One will be removed. [ Info: Initial pass found N, O and C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for c8ce00653a2: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: Detected 5 structures of dimension 0 in c8ce00653a2, possibly complex solvent residues. They will be ignored for topology computation. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 18m01.0s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 4 4 1.1s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17494 17494 10m07.2s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 57.6s Test Summary: | Pass Broken Total Time Executable | 29 1 30 9.6s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ................................................. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 29 running 1 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_process_events at /source/src/jl_uv.c:394 process_events at ./libuv.jl:133 [inlined] wait at ./task.jl:1230 yield at ./task.jl:1084 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:677 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:791 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:34 unknown function (ip: 0x757b171da422) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:87 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x757af63d9d7c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x757b4a52a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 wait at ./process.jl:685 wait at ./process.jl:686 jfptr_wait_46335.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2553 unknown function (ip: 0x725b89b834b3) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #205 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2493 withenv at ./env.jl:265 #190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2161 #186 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2275 #mktempdir#21 at ./file.jl:936 unknown function (ip: 0x725b89b7079c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 mktempdir at ./file.jl:932 mktempdir at ./file.jl:932 #sandbox#182 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2222 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2212 unknown function (ip: 0x725b89b6ee81) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#193 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2478 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:515 unknown function (ip: 0x725b89b6eab1) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 unknown function (ip: 0x725b89b6add0) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:158 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 unknown function (ip: 0x725b89b638ff) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:306 exec_options at ./client.jl:317 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x725ba4116249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000757b2fffc010 Total snapshots: 189. Utilization: 100% ╎189 @Base/client.jl:550 _start() ╎ 189 @Base/client.jl:283 exec_options(opts::Base.JLOptions) ╎ 189 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ 189 @Base/Base.jl:308 (::Base.IncludeInto)(fname::String) ╎ 189 @Base/Base.jl:307 include(mapexpr::Function, mod::Module, _path::St… ╎ 189 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pa… ╎ ╎ 189 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), m… ╎ ╎ 189 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 189 @CrystalNets/…uery.jl:90 topological_genome(g::PeriodicGraph2D) ╎ ╎ 189 @CrystalNets/…ery.jl:90 #topological_genome#222 ╎ ╎ 189 @CrystalNets/…ery.jl:87 topological_genome ╎ ╎ ╎ 189 @CrystalNets/…ry.jl:153 topological_genome(group::Underlying… ╎ ╎ ╎ 189 @CrystalNets/…ry.jl:34 topological_genome(net::CrystalNet2D… ╎ ╎ ╎ 189 @CrystalNets/…n.jl:274 minimize ╎ ╎ ╎ 189 @CrystalNets/…n.jl:287 minimize_unstable ╎ ╎ ╎ 189 @CrystalNets/…n.jl:791 find_first_valid_translation_unst… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1080 yield() ╎ ╎ ╎ ╎ 7 @CrystalNets/….jl:617 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:562 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:542 find_necessary_image 1╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:590 backtrack_to!(vmapprogress::Vect… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 5 @CrystalNets/….jl:597 backtrack_to!(vmapprogress::Vect… 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:0 attribute_next_available_modify!(v… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:559 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:452 first ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:81 getindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:564 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:81 getindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:565 attribute_next_available_modify!… ╎ ╎ ╎ ╎ 1 @Base/…barray.jl:222 view ╎ ╎ ╎ ╎ 1 @Base/range.jl:986 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:699 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:689 checkbounds ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:757 checkindex ╎ ╎ ╎ ╎ ╎ 1 @Base/…rray.jl:754 checkindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:519 < ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:578 attribute_next_available_modify!… 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:919 getindex ╎ ╎ ╎ ╎ 103 @CrystalNets/….jl:677 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:1222 wait() 1╎ ╎ ╎ ╎ 6 @Base/task.jl:1082 yield() 1╎ ╎ ╎ ╎ 1 @Base/task.jl:967 enq_work(t::Task) ╎ ╎ ╎ ╎ 4 @Base/task.jl:989 enq_work(t::Task) ╎ ╎ ╎ ╎ 1 @Base/task.jl:897 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:43 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:56 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == 1╎ ╎ ╎ ╎ 1 @Base/task.jl:898 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 2 @Base/task.jl:901 push!(W::Base.IntrusiveLinkedListS… ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:65 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…otion.jl:637 == ╎ ╎ ╎ ╎ 1 @Base/…cks-mt.jl:68 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…utils.jl:159 enable_finalizers 4╎ ╎ ╎ ╎ 96 @Base/task.jl:1084 yield() ╎ ╎ ╎ ╎ 4 @Base/task.jl:1227 wait() 3╎ ╎ ╎ ╎ 3 @Base/gcutils.jl:0 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/task.jl:947 workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 1 @Base/array.jl:249 isassigned 1╎ ╎ ╎ ╎ ╎ 1 @Base/…emory.jl:113 isassigned ╎ ╎ ╎ ╎ 6 @Base/task.jl:1228 wait() ╎ ╎ ╎ ╎ 6 @Base/task.jl:1214 poptask(W::Base.IntrusiveLinkedLi… ╎ ╎ ╎ ╎ 6 @Base/task.jl:1196 trypoptask(W::Base.IntrusiveLink… 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:922 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 3 @Base/task.jl:923 popfirst!(W::Base.IntrusiveLinke… 2╎ ╎ ╎ ╎ ╎ 2 @Base/…ks-mt.jl:41 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:43 lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:56 trylock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == 1╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:924 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 1 @Base/task.jl:927 popfirst!(W::Base.IntrusiveLinke… ╎ ╎ ╎ ╎ ╎ 1 @Base/…ks-mt.jl:65 unlock 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tion.jl:637 == 1╎ ╎ ╎ ╎ 4 @Base/task.jl:1229 wait() ╎ ╎ ╎ ╎ 1 @Base/task.jl:0 try_yieldto(undo::typeof(Base.ensure… ╎ ╎ ╎ ╎ 1 @Base/task.jl:184 setproperty! 1╎ ╎ ╎ ╎ ╎ 1 @Base/…mpiler.jl:58 setproperty! 2╎ ╎ ╎ ╎ 2 @Base/task.jl:1142 try_yieldto(undo::typeof(Base.ens… ╎ ╎ ╎ ╎ 78 @Base/task.jl:1230 wait() 77╎ ╎ ╎ ╎ 78 @Base/libuv.jl:133 process_events ╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:679 translation_to_direct_map(shrunk_… 2╎ ╎ ╎ ╎ 2 @Base/…entials.jl:919 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:691 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Graphs/…/core.jl:160 degree ╎ ╎ ╎ ╎ 1 @Graphs/…core.jl:118 outdegree ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:58 outneighbors 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 20 @CrystalNets/….jl:699 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/array.jl:790 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 1 @Base/…nerator.jl:48 iterate ╎ ╎ ╎ ╎ 1 @CrystalNets/…jl:701 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 15 @Base/array.jl:795 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 15 @Base/array.jl:670 _array_for_inner ╎ ╎ ╎ ╎ 15 @Base/…tarray.jl:866 similar ╎ ╎ ╎ ╎ 15 @Base/…tarray.jl:867 similar ╎ ╎ ╎ ╎ ╎ 15 @Base/boot.jl:660 Array ╎ ╎ ╎ ╎ ╎ 14 @Base/boot.jl:647 Array 14╎ ╎ ╎ ╎ ╎ 14 @Base/boot.jl:588 GenericMemory 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:648 Array ╎ ╎ ╎ ╎ 4 @Base/array.jl:800 collect(itr::Base.Generator{Vector{… ╎ ╎ ╎ ╎ 4 @Base/array.jl:826 collect_to_with_first! 1╎ ╎ ╎ ╎ 1 @Base/array.jl:0 collect_to! ╎ ╎ ╎ ╎ 3 @Base/array.jl:848 collect_to! ╎ ╎ ╎ ╎ 1 @Base/…erator.jl:45 iterate ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:519 < ╎ ╎ ╎ ╎ 2 @Base/…erator.jl:48 iterate ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:702 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:520 <= ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…l:703 #translation_to_direct_map##0 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex ╎ ╎ ╎ ╎ 9 @CrystalNets/….jl:707 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 9 @Base/sort.jl:1733 sort! ╎ ╎ ╎ ╎ 9 @Base/sort.jl:1740 #sort!#23 ╎ ╎ ╎ ╎ 9 @Base/sort.jl:1594 _sort! ╎ ╎ ╎ ╎ 9 @Base/sort.jl:561 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:654 _sort! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:490 _hi ╎ ╎ ╎ ╎ ╎ 1 @Base/…uple.jl:331 merge ╎ ╎ ╎ ╎ ╎ 1 @Base/…uple.jl:332 macro expansion 1╎ ╎ ╎ ╎ ╎ 1 @Base/…uple.jl:156 _new_NamedTuple ╎ ╎ ╎ ╎ ╎ 8 @Base/sort.jl:686 _sort! ╎ ╎ ╎ ╎ ╎ 8 @Base/sort.jl:747 _sort! ╎ ╎ ╎ ╎ ╎ 8 @Base/sort.jl:800 _sort!(v::Vector{PeriodicVerte… 1╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:0 _sort!(v::Vector{PeriodicVertex… ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:842 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:920 getindex ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:844 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 1 @Base/…ials.jl:920 getindex ╎ ╎ ╎ ╎ ╎ 3 @Base/sort.jl:845 _sort!(v::Vector{PeriodicVert… 1╎ ╎ ╎ ╎ ╎ 3 @Base/…ring.jl:120 lt ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ing.jl:118 lt ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:54 isless ╎ ╎ ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:51 cmp ╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…er.jl:42 iszero 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…on.jl:637 == ╎ ╎ ╎ ╎ ╎ ╎ 1 @CrystalNets/…:707 #translation_to_direct_map… 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:86 - ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:851 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:986 setindex! 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ray.jl:990 _setindex! ╎ ╎ ╎ ╎ ╎ 1 @Base/sort.jl:852 _sort!(v::Vector{PeriodicVert… ╎ ╎ ╎ ╎ ╎ 1 @Base/range.jl:921 iterate 1╎ ╎ ╎ ╎ ╎ ╎ 1 @Base/…ion.jl:637 == ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:708 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/some.jl:158 macro expansion ╎ ╎ ╎ ╎ 1 @Base/array.jl:2444 findfirst ╎ ╎ ╎ ╎ 1 @Base/array.jl:2390 findnext ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:166 keys ╎ ╎ ╎ ╎ ╎ 1 @Base/…dices.jl:536 LinearIndices ╎ ╎ ╎ ╎ ╎ 1 @Base/…array.jl:98 axes 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:194 size ╎ ╎ ╎ ╎ 16 @CrystalNets/….jl:709 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 16 @Base/bitarray.jl:398 falses ╎ ╎ ╎ ╎ 16 @Base/…tarray.jl:400 falses ╎ ╎ ╎ ╎ 14 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 12 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 5 @Base/boot.jl:647 Array 5╎ ╎ ╎ ╎ ╎ 5 @Base/boot.jl:588 GenericMemory 7╎ ╎ ╎ ╎ ╎ 7 @Base/boot.jl:648 Array 2╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:39 BitArray ╎ ╎ ╎ ╎ 2 @Base/…tarray.jl:377 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 2 @Base/array.jl:329 fill! 2╎ ╎ ╎ ╎ ╎ 2 @Base/array.jl:0 _fill! ╎ ╎ ╎ ╎ 2 @CrystalNets/….jl:713 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 2 @Base/…entials.jl:919 getindex 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:11 length 2╎ ╎ ╎ ╎ 3 @CrystalNets/….jl:714 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/…erators.jl:196 iterate ╎ ╎ ╎ ╎ 1 @Base/…rators.jl:197 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:901 iterate 1╎ ╎ ╎ ╎ ╎ 1 @Base/…tials.jl:920 getindex 2╎ ╎ ╎ ╎ 4 @CrystalNets/….jl:715 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 2 @Base/bitarray.jl:677 getindex 1╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:0 unsafe_bitgetindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:671 unsafe_bitgetindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 14 @CrystalNets/….jl:730 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 14 @Base/bitarray.jl:398 falses 1╎ ╎ ╎ ╎ 14 @Base/…tarray.jl:400 falses ╎ ╎ ╎ ╎ 12 @Base/…tarray.jl:71 BitArray ╎ ╎ ╎ ╎ 9 @Base/…tarray.jl:37 BitArray ╎ ╎ ╎ ╎ ╎ 6 @Base/boot.jl:647 Array 6╎ ╎ ╎ ╎ ╎ 6 @Base/boot.jl:588 GenericMemory 2╎ ╎ ╎ ╎ ╎ 3 @Base/boot.jl:648 Array 1╎ ╎ ╎ ╎ ╎ 1 @Base/boot.jl:593 memoryref 3╎ ╎ ╎ ╎ 3 @Base/…tarray.jl:39 BitArray ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:377 fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 1 @Base/array.jl:329 fill! 1╎ ╎ ╎ ╎ ╎ 1 @Base/array.jl:334 _fill! 1╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:732 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:733 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:677 getindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:671 unsafe_bitgetindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:742 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:677 getindex ╎ ╎ ╎ ╎ 1 @Base/…tarray.jl:671 unsafe_bitgetindex 1╎ ╎ ╎ ╎ 1 @Base/…ntials.jl:920 getindex ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:743 translation_to_direct_map(shrunk_… ╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:55 == 1╎ ╎ ╎ ╎ 1 @PeriodicGraphs/…:51 cmp ╎ ╎ ╎ ╎ 1 @CrystalNets/….jl:750 translation_to_direct_map(shrunk_… 1╎ ╎ ╎ ╎ 1 @Base/…entials.jl:920 getindex ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000725b89bfc010 Total snapshots: 350. Utilization: 0% ╎350 @Base/client.jl:550 _start() ╎ 350 @Base/client.jl:317 exec_options(opts::Base.JLOptions) ╎ 350 @Base/Base.jl:306 include(mod::Module, _path::String) ╎ 350 @Base/loading.jl:2930 _include(mapexpr::Function, mod::Module, _pat… ╎ 350 @Base/loading.jl:2870 include_string(mapexpr::typeof(identity), mo… ╎ 350 @Base/boot.jl:489 eval(m::Module, e::Any) ╎ ╎ 350 @Pkg/src/API.jl:156 kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ 350 @Pkg/src/API.jl:156 #test#81 ╎ ╎ 350 @Pkg/src/API.jl:157 test ╎ ╎ 350 @Pkg/src/API.jl:157 test(pkgs::Vector{String}; kwargs::Base.P… ╎ ╎ 350 @Pkg/src/API.jl:158 kwcall(::@NamedTuple{julia_args::Cmd}, :… ╎ ╎ ╎ 350 @Pkg/src/API.jl:169 test(pkgs::Vector{PackageSpec}; io::IOC… ╎ ╎ ╎ 350 @Pkg/src/API.jl:515 kwcall(::@NamedTuple{julia_args::Cmd, … ╎ ╎ ╎ 350 @Pkg/src/API.jl:538 test(ctx::Pkg.Types.Context, pkgs::Ve… ╎ ╎ ╎ 350 @Pkg/…erations.jl:2384 test ╎ ╎ ╎ 350 @Pkg/…erations.jl:2478 test(ctx::Pkg.Types.Context, pkg… ╎ ╎ ╎ ╎ 350 @Pkg/…rations.jl:2212 kwcall(::@NamedTuple{preferences… ╎ ╎ ╎ ╎ 350 @Pkg/…rations.jl:2222 #sandbox#182 ╎ ╎ ╎ ╎ 350 @Base/file.jl:932 mktempdir(fn::Function) ╎ ╎ ╎ ╎ 350 @Base/file.jl:932 mktempdir(fn::Function, parent::S… ╎ ╎ ╎ ╎ 350 @Base/file.jl:936 mktempdir(fn::Pkg.Operations.var… ╎ ╎ ╎ ╎ ╎ 350 @Pkg/…tions.jl:2275 (::Pkg.Operations.var"#186#18… ╎ ╎ ╎ ╎ ╎ 350 @Pkg/…tions.jl:2161 with_temp_env(fn::Pkg.Operat… ╎ ╎ ╎ ╎ ╎ 350 @Pkg/…tions.jl:2308 (::Pkg.Operations.var"#190#… ╎ ╎ ╎ ╎ ╎ 350 @Base/env.jl:265 withenv(::Pkg.Operations.var"… ╎ ╎ ╎ ╎ ╎ 350 @Pkg/…ions.jl:2493 (::Pkg.Operations.var"#205… ╎ ╎ ╎ ╎ ╎ ╎ 350 @Pkg/…ons.jl:2553 subprocess_handler(cmd::Cm… ╎ ╎ ╎ ╎ ╎ ╎ 350 @Base/…ss.jl:686 wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 350 @Base/…ss.jl:685 wait(x::Base.Process, syn… ╎ ╎ ╎ ╎ ╎ ╎ 350 @Base/…on.jl:141 wait(c::Base.GenericCond… ╎ ╎ ╎ ╎ ╎ ╎ 350 @Base/…sk.jl:1228 wait() 349╎ ╎ ╎ ╎ ╎ ╎ ╎ 350 @Base/…sk.jl:1216 poptask(W::Base.Intru… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 profile_printing_listener at ./Base.jl:332 #start_profile_listener##0 at ./Base.jl:352 jfptr_YY.start_profile_listenerYY.YY.0_18905.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 23319477 (Pool: 23318857; Big: 620); GC: 20 [29] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/test/runtests.jl:416 popfirst! at ./task.jl:923 trypoptask at ./task.jl:1196 poptask at ./task.jl:1214 wait at ./task.jl:1228 yield at ./task.jl:1084 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:677 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:791 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:34 unknown function (ip: 0x757b171da422) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:87 [inlined] #topological_genome#222 at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/BL1Km/src/query.jl:90 unknown function (ip: 0x757af63d9d7c) at (unknown file) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 include_string at ./loading.jl:2870 _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 _include at ./loading.jl:2930 include at ./Base.jl:307 IncludeInto at ./Base.jl:308 jfptr_IncludeInto_61918.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:689 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:1035 jl_toplevel_eval_flex at /source/src/toplevel.c:975 ijl_toplevel_eval at /source/src/toplevel.c:1047 ijl_toplevel_eval_in at /source/src/toplevel.c:1092 eval at ./boot.jl:489 exec_options at ./client.jl:283 _start at ./client.jl:550 jfptr__start_55866.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] true_main at /source/src/jlapi.c:971 jl_repl_entrypoint at /source/src/jlapi.c:1139 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x757b4a52a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) Allocations: 1828096620 (Pool: 1828092559; Big: 4061); GC: 586 PkgEval terminated after 2722.53s: test duration exceeded the time limit