Package evaluation to test ClimaAtmos on Julia 1.12.4 (422f456051*) started at 2026-01-29T20:00:42.972 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.74s ################################################################################ # Installation # Installing ClimaAtmos... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [b2c96348] + ClimaAtmos v0.34.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [c7e460c6] + ArgParse v1.2.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [86bc3604] + AtmosphericProfilesLibrary v0.1.7 [a9b6321e] + Atomix v1.1.2 [13072b0f] + AxisAlgorithms v1.1.0 [aae01518] + BandedMatrices v1.11.0 [198e06fe] + BangBang v0.4.7 [9718e550] + Baselet v0.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [179af706] + CFTime v0.2.5 [2a0fbf3d] + CPUSummary v0.2.7 [082447d4] + ChainRules v1.72.6 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [b2c96348] + ClimaAtmos v0.34.0 [3a4d1b5c] + ClimaComms v0.6.10 [d414da3d] + ClimaCore v0.14.48 ⌅ [1ecacbb8] + ClimaDiagnostics v0.2.15 [dd0f122e] + ClimaInterpolations v0.1.1 [5c42b081] + ClimaParams v1.0.10 [595c0a79] + ClimaTimeSteppers v0.8.5 [b3f4f4ca] + ClimaUtilities v0.1.27 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [6a9e3e04] + CloudMicrophysics v0.29.1 [1fbeeb36] + CommonDataModel v0.4.2 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [adafc99b] + CpuId v0.3.1 [7445602f] + CubedSphere v0.3.4 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 ⌃ [2b5f629d] + DiffEqBase v6.183.2 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [3c3547ce] + DiskArrays v0.4.19 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [f151be2c] + EnzymeCore v0.8.18 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.1 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [587475ba] + Flux v0.16.8 [f6369f11] + ForwardDiff v1.3.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [f67ccb44] + HDF5 v0.17.2 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 ⌅ [e98cc03f] + Insolation v0.10.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [ba0b0d4f] + Krylov v0.10.5 ⌅ [0b1a1467] + KrylovKit v0.8.3 [8ac3fa9e] + LRUCache v1.6.2 [10f19ff3] + LayoutPointers v0.1.17 [9dccce8e] + LazyBroadcast v1.0.0 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.17.2 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [c3c07f87] + MultiBroadcastFusion v0.3.3 [85f8d34a] + NCDatasets v0.14.10 [872c559c] + NNlib v0.9.33 [5da4648a] + NVTX v1.0.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [0d71be07] + NullBroadcasts v0.1.0 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.10 [3bd65402] + Optimisers v0.4.7 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [eebad327] + PkgVersion v0.3.3 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [d236fae5] + PreallocationTools v0.4.34 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [33c8b6b6] + ProgressLogging v0.1.6 [43287f4e] + PtrArrays v1.3.0 [a01a1ee8] + RRTMGP v0.21.6 [c84ed2f1] + Ratios v0.4.5 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.46.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v1.0.2 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 ⌅ [0bca4576] + SciMLBase v2.112.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [dc90abb0] + SparseInverseSubset v0.1.2 [0a514795] + SparseMatrixColorings v0.4.23 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [7792a7ef] + StrideArraysCore v0.5.8 [69024149] + StringEncodings v0.3.7 [09ab397b] + StructArrays v0.7.2 [49b00bb7] + SurfaceFluxes v0.15.0 [2efcf032] + SymbolicIndexingInterface v0.3.46 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [6aa5eb33] + TaylorSeries v0.20.10 [b718987f] + TextWrap v1.0.2 [b60c26fb] + Thermodynamics v0.15.7 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [28d57a85] + Transducers v0.4.85 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [0fe1646c] + UnrolledUtilities v0.1.9 [013be700] + UnsafeAtomics v0.3.0 ⌅ [409d34a3] + VectorInterface v0.4.9 [efce3f68] + WoodburyMatrices v1.1.0 [ddb6d928] + YAML v0.4.16 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [5ced341a] + Lz4_jll v1.10.1+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.2+0 [7243133f] + NetCDF_jll v401.900.300+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [477f73a3] + libaec_jll v1.1.5+0 [337d8026] + libzip_jll v1.11.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 41396.9 ms ✓ SciMLBase 3809.4 ms ✓ TaylorSeries → TaylorSeriesRATExt 3878.6 ms ✓ MLDataDevices → RecursiveArrayToolsExt 6723.8 ms ✓ Zygote → ZygoteColorsExt 97191.4 ms ✓ MLDataDevices → ZygoteExt 105929.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsZygoteExt 6236.5 ms ✓ RRTMGP → RRTMGPNCDatasetsExt 252802.5 ms ✓ Makie 7872.0 ms ✓ SciMLBase → SciMLBaseForwardDiffExt 51235.5 ms ✓ SciMLBase → SciMLBaseDistributionsExt 4157.0 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 5185.4 ms ✓ SciMLBase → SciMLBaseMLStyleExt 52379.6 ms ✓ DiffEqBase 57624.5 ms ✓ ClimaCore 193458.8 ms ✓ Flux ✗ CairoMakie 467268.5 ms ✓ SciMLBase → SciMLBaseMakieExt 57500.8 ms ✓ SciMLBase → SciMLBaseZygoteExt 83593.1 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 8494.0 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5240.0 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 63759.0 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 57062.8 ms ✓ ClimaCore → KrylovExt 13473.2 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreExt 82790.6 ms ✓ ClimaTimeSteppers 148773.1 ms ✓ ClimaDiagnostics 121980.9 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt 16255.9 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreNCDatasetsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 47 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_8085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x00007e14511263b0 Total snapshots: 246. Utilization: 0% ╎246 @Base/asyncevent.jl:359 (::Base.var"#634#635"{FileWatching.Pidfile.var… ╎ 246 @Base/asyncevent.jl:163 _trywait(t::Timer) ╎ 246 @Base/condition.jl:141 wait(c::Base.GenericCondition{Base.Threads.Sp… ╎ 246 @Base/task.jl:1228 wait() 245╎ 246 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 task_done_hook at ./task.jl:868 jfptr_task_done_hook_67638.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] jl_finish_task at /source/src/task.c:341 start_task at /source/src/task.c:1263 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.12/Profile/src/Profile.jl:1361 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (default) Task 0x0000793778381c30 Total snapshots: 374. Utilization: 0% ╎374 @Base/task.jl:868 task_done_hook(t::Task) ╎ 374 @Base/task.jl:1228 wait() 373╎ 374 @Base/task.jl:1216 poptask(W::Base.IntrusiveLinkedListSynchronized{T… [47] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 poptask at ./task.jl:1216 wait at ./task.jl:1228 #wait#398 at ./condition.jl:141 _trywait at ./asyncevent.jl:163 #634 at ./asyncevent.jl:359 jfptr_YY.634_8085.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:4014 [inlined] ijl_apply_generic at /source/src/gf.c:4214 jl_apply at /source/src/julia.h:2391 [inlined] start_task at /source/src/task.c:1252 unknown function (ip: (nil)) at (unknown file) Allocations: 68823074 (Pool: 68821895; Big: 1179); GC: 62 PkgEval terminated after 2759.76s: test duration exceeded the time limit