Package evaluation to test BioLab on Julia 1.12.4 (422f456051*) started at 2026-01-29T12:26:59.885 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 7.88s ################################################################################ # Installation # Installing BioLab... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [1fe83854] + BioLab v0.13.1 Updating `~/.julia/environments/v1.12/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [13072b0f] + AxisAlgorithms v1.1.0 [1fe83854] + BioLab v0.13.1 [336ed68f] + CSV v0.10.15 [d360d2e6] + ChainRulesCore v1.26.0 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.31.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [34da2185] + Compat v4.18.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [8f5d6c58] + EzXML v1.2.3 [b86e33f2] + FFTA v0.3.1 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [92fee26a] + GZip v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [18e54dd8] + IntegerMathUtils v0.1.3 [a98d9a8b] + Interpolations v0.16.2 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [5ab0869b] + KernelDensity v0.6.11 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [46d2c3a1] + MuladdMacro v0.2.4 [f8716d33] + MultipleTesting v0.6.0 [6ef6ca0d] + NMF v1.0.3 [b8a86587] + NearestNeighbors v0.4.26 [b7351bd1] + NonNegLeastSquares v0.4.1 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [0448d7d9] + RandomizedLinAlg v0.1.0 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [91c51154] + SentinelArrays v1.4.9 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [ea10d353] + WeakRefStrings v1.4.2 [efce3f68] + WoodburyMatrices v1.1.0 [76eceee3] + WorkerUtilities v1.6.1 ⌅ [fdbf4ff8] + XLSX v0.9.0 [a5390f91] + ZipFile v0.10.1 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.66s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling packages... 3241.6 ms ✓ XLSX 215457.1 ms ✓ BioLab 2 dependencies successfully precompiled in 225 seconds. 136 already precompiled. Precompilation completed after 233.27s ################################################################################ # Testing # Testing BioLab Status `/tmp/jl_Bsd6bw/Project.toml` [1fe83854] BioLab v0.13.1 [336ed68f] CSV v0.10.15 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 ⌅ [5ae59095] Colors v0.12.11 [a93c6f00] DataFrames v1.8.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 ⌅ [92fee26a] GZip v0.5.2 ⌅ [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.11 [f8716d33] MultipleTesting v0.6.0 [6ef6ca0d] NMF v1.0.3 [bac558e1] OrderedCollections v1.8.1 [92933f4c] ProgressMeter v1.11.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 ⌅ [fdbf4ff8] XLSX v0.9.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 Status `/tmp/jl_Bsd6bw/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [13072b0f] AxisAlgorithms v1.1.0 [1fe83854] BioLab v0.13.1 [336ed68f] CSV v0.10.15 [d360d2e6] ChainRulesCore v1.26.0 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [34da2185] Compat v4.18.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [8f5d6c58] EzXML v1.2.3 [b86e33f2] FFTA v0.3.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [92fee26a] GZip v0.5.2 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [5ab0869b] KernelDensity v0.6.11 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 [f8716d33] MultipleTesting v0.6.0 [6ef6ca0d] NMF v1.0.3 [b8a86587] NearestNeighbors v0.4.26 [b7351bd1] NonNegLeastSquares v0.4.1 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [0448d7d9] RandomizedLinAlg v0.1.0 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [91c51154] SentinelArrays v1.4.9 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [892a3eda] StringManipulation v0.4.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [3bb67fe8] TranscodingStreams v0.11.3 [ea10d353] WeakRefStrings v1.4.2 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 ⌅ [fdbf4ff8] XLSX v0.9.0 [a5390f91] ZipFile v0.10.1 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.15.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Testing Bad.jl Precompiling packages... 1775.2 ms ✓ Calculus 1188.8 ms ✓ OrderedCollections 922.9 ms ✓ LaTeXStrings 905.3 ms ✓ InvertedIndices 3401.6 ms ✓ IrrationalConstants 997.2 ms ✓ DataAPI 966.5 ms ✓ StatsAPI 1800.6 ms ✓ ProgressMeter 6310.9 ms ✓ StringManipulation 834.4 ms ✓ StaticArraysCore 951.5 ms ✓ GZip 802.2 ms ✓ NaNMath 893.1 ms ✓ Compat 1599.3 ms ✓ Requires 958.2 ms ✓ ZipFile 1166.6 ms ✓ DocStringExtensions 5538.7 ms ✓ SentinelArrays 1004.2 ms ✓ RandomizedLinAlg 2648.9 ms ✓ TranscodingStreams 1516.3 ms ✓ Preferences 1461.2 ms ✓ WoodburyMatrices 1808.4 ms ✓ NonNegLeastSquares 1741.3 ms ✓ PDMats 11066.9 ms ✓ FixedPointNumbers 2388.1 ms ✓ FillArrays 4515.6 ms ✓ Tables 1468.0 ms ✓ PooledArrays 3718.6 ms ✓ Missings 4214.2 ms ✓ Distances 20281.6 ms ✓ StaticArrays 934.4 ms ✓ Compat → CompatLinearAlgebraExt 1023.2 ms ✓ Adapt 1253.6 ms ✓ LogExpFunctions 1687.1 ms ✓ CodecZlib 926.3 ms ✓ PrecompileTools 1163.7 ms ✓ JLLWrappers 1328.7 ms ✓ AxisAlgorithms 5604.1 ms ✓ ColorTypes 958.6 ms ✓ Ratios → RatiosFixedPointNumbersExt 38046.3 ms ✓ PrettyTables 1390.8 ms ✓ Distances → DistancesSparseArraysExt 1316.4 ms ✓ StaticArrays → StaticArraysStatisticsExt 4009.6 ms ✓ DataStructures 4458.0 ms ✓ FilePathsBase 6265.5 ms ✓ ChainRulesCore 1786.6 ms ✓ Adapt → AdaptStaticArraysExt 850.7 ms ? OffsetArrays 81345.4 ms ✓ Parsers 1502.0 ms ✓ Rmath_jll 1604.2 ms ✓ Libiconv_jll 1503.4 ms ✓ IntelOpenMP_jll 1624.4 ms ✓ FFTW_jll 1574.4 ms ✓ OpenSpecFun_jll 14227.8 ms ✓ Colors 8943.1 ms ✓ ColorVectorSpace 5735.7 ms ✓ NearestNeighbors 1990.5 ms ✓ SortingAlgorithms 3053.7 ms ✓ QuadGK 1470.1 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 4388.4 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 2319.6 ms ? Interpolations 3079.5 ms ✓ InlineStrings 4917.6 ms ✓ JSON 1791.1 ms ✓ Rmath 1706.3 ms ✓ XML2_jll 4703.6 ms ✓ MKL_jll 6287.1 ms ✓ SpecialFunctions 6882.5 ms ✓ ColorSchemes 8283.1 ms ✓ StatsBase 2358.4 ms ✓ WeakRefStrings 176229.4 ms ✓ DataFrames 4659.6 ms ✓ EzXML 40737.1 ms ✓ FFTW 4854.3 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 7423.1 ms ✓ DualNumbers 1782.9 ms ✓ ColorVectorSpace → SpecialFunctionsExt 63585.2 ms ✓ NMF 4671.7 ms ✓ Clustering ✗ CSV 2648.9 ms ✓ XLSX 3088.4 ms ✓ HypergeometricFunctions 7779.4 ms ✓ StatsFuns 6282.5 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 11746.6 ms ✓ Distributions 8997.8 ms ✓ Distributions → DistributionsChainRulesCoreExt 8511.0 ms ✓ MultipleTesting 8729.2 ms ? KernelDensity Info Given BioLab was explicitly requested, output will be shown live  ERROR: LoadError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace:  [1] getsource(x::Any, buffer_in_memory::Bool)  @ CSV ~/.julia/packages/CSV/OnldF/src/utils.jl:288  [2] macro expansion  @ ~/.julia/packages/CSV/OnldF/src/context.jl:382 [inlined]  [3] Context  @ ./none:0 [inlined]  [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, groupmark::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, stripwhitespace::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg)  @ CSV ~/.julia/packages/CSV/OnldF/src/context.jl:0  [5] CSV.File(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, groupmark::Nothing, truestrings::Vector{String}, falsestrings::Vector{String}, stripwhitespace::Bool, type::Nothing, types::Nothing, typemap::IdDict{Type, Type}, pool::Tuple{Float64, Int64}, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool)  @ CSV ~/.julia/packages/CSV/OnldF/src/file.jl:162  [6] macro expansion  @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:10 [inlined]  [7] macro expansion  @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:74 [inlined]  [8] macro expansion  @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:7 [inlined]  [9] macro expansion  @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:136 [inlined]  [10] top-level scope  @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:135  [11] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:307  [12] top-level scope  @ ~/.julia/packages/CSV/OnldF/src/CSV.jl:120  [13] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3024  [15] top-level scope  @ stdin:5  [16] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [18] include_string  @ ./loading.jl:2880 [inlined]  [19] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [20] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/CSV.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b] to "/home/pkgeval/.julia/compiled/v1.12/CSV/jl_UtLpgc". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3311  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})()  @ Base ./loading.jl:2679  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114  [7] #invokelatest_gr#232  @ ./reflection.jl:1297 [inlined]  [8] invokelatest_gr  @ ./reflection.jl:1289 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3882  [10] maybe_cachefile_lock  @ ./loading.jl:3879 [inlined]  [11] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2665  [12] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2493  [13] macro expansion  @ ./loading.jl:2421 [inlined]  [14] macro expansion  @ ./lock.jl:376 [inlined]  [15] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2386  [16] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2362  [17] top-level scope  @ ~/.julia/packages/BioLab/EZDAq/src/DataFrame.jl:7  [18] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:307  [19] top-level scope  @ ~/.julia/packages/BioLab/EZDAq/src/BioLab.jl:11  [20] include(mod::Module, _path::String)  @ Base ./Base.jl:306  [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3024  [22] top-level scope  @ stdin:5  [23] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2870  [25] include_string  @ ./loading.jl:2880 [inlined]  [26] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:315  [27] _start()  @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/src/DataFrame.jl:1 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/src/BioLab.jl:1 in expression starting at stdin:5 ✗ BioLab 83 dependencies successfully precompiled in 748 seconds. 46 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ Interpolations │ WARNING: Method definition fill(Any, Tuple{Vararg{Union{Integer, Base.AbstractUnitRange{T} where T}, N}}) where {N} in module Base at array.jl:543 overwritten in module OffsetArrays at /home/pkgeval/.julia/packages/OffsetArrays/0MOrf/src/OffsetArrays.jl:394. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ OffsetArrays │ WARNING: Method definition fill(Any, Tuple{Vararg{Union{Integer, Base.AbstractUnitRange{T} where T}, N}}) where {N} in module Base at array.jl:543 overwritten in module OffsetArrays at /home/pkgeval/.julia/packages/OffsetArrays/0MOrf/src/OffsetArrays.jl:394. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ KernelDensity │ WARNING: Method definition fill(Any, Tuple{Vararg{Union{Integer, Base.AbstractUnitRange{T} where T}, N}}) where {N} in module Base at array.jl:543 overwritten in module OffsetArrays at /home/pkgeval/.julia/packages/OffsetArrays/0MOrf/src/OffsetArrays.jl:394. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ StaticArrays │ WARNING: Constructor for type "Tuple" was extended in `StaticArrays` without explicit qualification or import. │ NOTE: Assumed "Tuple" refers to `Base.Tuple`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Tuple end`. │ Hint: To silence the warning, qualify `Tuple` as `Base.Tuple` in the method signature or explicitly `import Base: Tuple`. └ ERROR: LoadError: The following 2 direct dependencies failed to precompile: CSV Failed to precompile CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b] to "/home/pkgeval/.julia/compiled/v1.12/CSV/jl_xYRZRV". ERROR: LoadError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/OnldF/src/utils.jl:288 [2] macro expansion @ ~/.julia/packages/CSV/OnldF/src/context.jl:382 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, groupmark::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, stripwhitespace::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/OnldF/src/context.jl:0 [5] CSV.File(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, groupmark::Nothing, truestrings::Vector{String}, falsestrings::Vector{String}, stripwhitespace::Bool, type::Nothing, types::Nothing, typemap::IdDict{Type, Type}, pool::Tuple{Float64, Int64}, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/OnldF/src/file.jl:162 [6] macro expansion @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:10 [inlined] [7] macro expansion @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:74 [inlined] [8] macro expansion @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:7 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:136 [inlined] [10] top-level scope @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:135 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [12] top-level scope @ ~/.julia/packages/CSV/OnldF/src/CSV.jl:120 [13] include(mod::Module, _path::String) @ Base ./Base.jl:306 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [15] top-level scope @ stdin:5 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [18] include_string @ ./loading.jl:2880 [inlined] [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [20] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/CSV.jl:1 in expression starting at stdin:5 BioLab Failed to precompile BioLab [1fe83854-81c0-42f7-afc9-71ba9af673ca] to "/home/pkgeval/.julia/compiled/v1.12/BioLab/jl_vge25s". ERROR: LoadError: TypeError: in typeassert, expected Tuple{Vector{UInt8}, Int64, Int64, Union{Nothing, String}}, got a value of type Nothing Stacktrace: [1] getsource(x::Any, buffer_in_memory::Bool) @ CSV ~/.julia/packages/CSV/OnldF/src/utils.jl:288 [2] macro expansion @ ~/.julia/packages/CSV/OnldF/src/context.jl:382 [inlined] [3] Context @ ./none:0 [inlined] [4] CSV.Context(source::CSV.Arg, header::CSV.Arg, normalizenames::CSV.Arg, datarow::CSV.Arg, skipto::CSV.Arg, footerskip::CSV.Arg, transpose::CSV.Arg, comment::CSV.Arg, ignoreemptyrows::CSV.Arg, ignoreemptylines::CSV.Arg, select::CSV.Arg, drop::CSV.Arg, limit::CSV.Arg, buffer_in_memory::CSV.Arg, threaded::CSV.Arg, ntasks::CSV.Arg, tasks::CSV.Arg, rows_to_check::CSV.Arg, lines_to_check::CSV.Arg, missingstrings::CSV.Arg, missingstring::CSV.Arg, delim::CSV.Arg, ignorerepeated::CSV.Arg, quoted::CSV.Arg, quotechar::CSV.Arg, openquotechar::CSV.Arg, closequotechar::CSV.Arg, escapechar::CSV.Arg, dateformat::CSV.Arg, dateformats::CSV.Arg, decimal::CSV.Arg, groupmark::CSV.Arg, truestrings::CSV.Arg, falsestrings::CSV.Arg, stripwhitespace::CSV.Arg, type::CSV.Arg, types::CSV.Arg, typemap::CSV.Arg, pool::CSV.Arg, downcast::CSV.Arg, lazystrings::CSV.Arg, stringtype::CSV.Arg, strict::CSV.Arg, silencewarnings::CSV.Arg, maxwarnings::CSV.Arg, debug::CSV.Arg, parsingdebug::CSV.Arg, validate::CSV.Arg, streaming::CSV.Arg) @ CSV ~/.julia/packages/CSV/OnldF/src/context.jl:0 [5] CSV.File(source::IOBuffer; header::Int64, normalizenames::Bool, datarow::Int64, skipto::Int64, footerskip::Int64, transpose::Bool, comment::Nothing, ignoreemptyrows::Bool, ignoreemptylines::Nothing, select::Nothing, drop::Nothing, limit::Nothing, buffer_in_memory::Bool, threaded::Nothing, ntasks::Nothing, tasks::Nothing, rows_to_check::Int64, lines_to_check::Nothing, missingstrings::Vector{String}, missingstring::String, delim::Nothing, ignorerepeated::Bool, quoted::Bool, quotechar::Char, openquotechar::Nothing, closequotechar::Nothing, escapechar::Char, dateformat::Nothing, dateformats::Nothing, decimal::UInt8, groupmark::Nothing, truestrings::Vector{String}, falsestrings::Vector{String}, stripwhitespace::Bool, type::Nothing, types::Nothing, typemap::IdDict{Type, Type}, pool::Tuple{Float64, Int64}, downcast::Bool, lazystrings::Bool, stringtype::Type{InlineStrings.InlineString}, strict::Bool, silencewarnings::Bool, maxwarnings::Int64, debug::Bool, parsingdebug::Bool, validate::Bool) @ CSV ~/.julia/packages/CSV/OnldF/src/file.jl:162 [6] macro expansion @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:10 [inlined] [7] macro expansion @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:74 [inlined] [8] macro expansion @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:7 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/0yi7r/src/workloads.jl:136 [inlined] [10] top-level scope @ ~/.julia/packages/CSV/OnldF/src/precompile.jl:135 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [12] top-level scope @ ~/.julia/packages/CSV/OnldF/src/CSV.jl:120 [13] include(mod::Module, _path::String) @ Base ./Base.jl:306 [14] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3024 [15] top-level scope @ stdin:5 [16] eval(m::Module, e::Any) @ Core ./boot.jl:489 [17] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [18] include_string @ ./loading.jl:2880 [inlined] [19] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [20] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/CSV/OnldF/src/CSV.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile CSV [336ed68f-0bac-5ca0-87d4-7b16caf5d00b] to "/home/pkgeval/.julia/compiled/v1.12/CSV/jl_UtLpgc". Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3311 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}})() @ Base ./loading.jl:2679 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.12/FileWatching/src/pidfile.jl:114 [7] #invokelatest_gr#232 @ ./reflection.jl:1297 [inlined] [8] invokelatest_gr @ ./reflection.jl:1289 [inlined] [9] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId, String, Dict{String, Int64}}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3882 [10] maybe_cachefile_lock @ ./loading.jl:3879 [inlined] [11] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2665 [12] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2493 [13] macro expansion @ ./loading.jl:2421 [inlined] [14] macro expansion @ ./lock.jl:376 [inlined] [15] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2386 [16] require(into::Module, mod::Symbol) @ Base ./loading.jl:2362 [17] top-level scope @ ~/.julia/packages/BioLab/EZDAq/src/DataFrame.jl:7 [18] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [19] top-level scope @ ~/.julia/packages/BioLab/EZDAq/src/BioLab.jl:11 [20] include(mod::Module, _path::String) @ Base ./Base.jl:306 [21] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3024 [22] top-level scope @ stdin:5 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2870 [25] include_string @ ./loading.jl:2880 [inlined] [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:315 [27] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/src/DataFrame.jl:1 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/src/BioLab.jl:1 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/test/Bad.jl:3 ERROR: LoadError: failed process: Process(`julia --project Bad.jl`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:597 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:512 [3] run @ ./process.jl:509 [inlined] [4] top-level scope @ ~/.julia/packages/BioLab/EZDAq/test/runtests.jl:63 [5] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [6] top-level scope @ none:6 [7] eval(m::Module, e::Any) @ Core ./boot.jl:489 [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:283 [9] _start() @ Base ./client.jl:550 in expression starting at /home/pkgeval/.julia/packages/BioLab/EZDAq/test/runtests.jl:57 Testing failed after 778.49s ERROR: LoadError: Package BioLab errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1058.58s: illegal method overwrites during precompilation