Package evaluation to test Attenuations on Julia 1.12.4 (422f456051*) started at 2026-01-29T04:12:43.518 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 9.16s ################################################################################ # Installation # Installing Attenuations... Resolving package versions... Installed BitFlags ──────────── v0.1.9 Installed SimpleBufferStream ── v1.2.0 Installed LoggingExtras ─────── v1.2.0 Installed IterTools ─────────── v1.10.0 Installed AxisArrays ────────── v0.4.8 Installed IntervalSets ──────── v0.7.13 Installed Unitful ───────────── v1.27.0 Installed Preferences ───────── v1.5.1 Installed ConcurrentUtilities ─ v2.5.0 Installed JLLWrappers ───────── v1.7.1 Installed URIs ──────────────── v1.6.1 Installed OpenSSL ───────────── v1.6.1 Installed TranscodingStreams ── v0.11.3 Installed Attenuations ──────── v0.7.6 Installed PrecompileTools ───── v1.3.3 Installed HTTP ──────────────── v1.10.19 Installed RangeArrays ───────── v0.3.2 Installed MbedTLS ───────────── v1.1.9 Installed MbedTLS_jll ───────── v2.28.1010+0 Installed CodecZlib ─────────── v0.7.8 Installed ExceptionUnwrapping ─ v0.1.11 Installing 1 artifacts Installed artifact MbedTLS 2.2 MiB Updating `~/.julia/environments/v1.12/Project.toml` [0ff343a0] + Attenuations v0.7.6 Updating `~/.julia/environments/v1.12/Manifest.toml` [0ff343a0] + Attenuations v0.7.6 [39de3d68] + AxisArrays v0.4.8 [d1d4a3ce] + BitFlags v0.1.9 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.0 [460bff9d] + ExceptionUnwrapping v0.1.11 [cd3eb016] + HTTP v1.10.19 [8197267c] + IntervalSets v0.7.13 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.1 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [4d8831e6] + OpenSSL v1.6.1 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [b3c3ace0] + RangeArrays v0.3.2 [777ac1f9] + SimpleBufferStream v1.2.0 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.27.0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 Installation completed after 7.91s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4155.2 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 26 already precompiled. Precompiling package dependencies... Precompiling packages... 643.6 ms ✓ RangeArrays 783.1 ms ✓ IntervalSets 1009.3 ms ✓ URIs 719.2 ms ✓ SimpleBufferStream 2075.5 ms ✓ ConcurrentUtilities 1135.6 ms ✓ IterTools 867.3 ms ✓ BitFlags 1226.3 ms ✓ TranscodingStreams 1074.9 ms ✓ LoggingExtras 39035.0 ms ✓ Unitful 1129.6 ms ✓ Preferences 1546.5 ms ✓ ExceptionUnwrapping 768.9 ms ✓ IntervalSets → IntervalSetsRandomExt 5616.3 ms ✓ OpenSSL 1105.9 ms ✓ CodecZlib 2017.1 ms ✓ Unitful → PrintfExt 1175.2 ms ✓ PrecompileTools 1397.9 ms ✓ JLLWrappers 1722.9 ms ✓ AxisArrays 1467.4 ms ✓ MbedTLS_jll 2470.4 ms ✓ MbedTLS 33352.4 ms ✓ HTTP 7450.7 ms ✓ Attenuations 23 dependencies successfully precompiled in 110 seconds. 17 already precompiled. Precompilation completed after 125.23s ################################################################################ # Testing # Testing Attenuations Status `/tmp/jl_HQXeFb/Project.toml` [0ff343a0] Attenuations v0.7.6 [39de3d68] AxisArrays v0.4.8 [cd3eb016] HTTP v1.10.19 [1986cc42] Unitful v1.27.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HQXeFb/Manifest.toml` [0ff343a0] Attenuations v0.7.6 [39de3d68] AxisArrays v0.4.8 [d1d4a3ce] BitFlags v0.1.9 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.0 [460bff9d] ExceptionUnwrapping v0.1.11 [cd3eb016] HTTP v1.10.19 [8197267c] IntervalSets v0.7.13 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.1 [e6f89c97] LoggingExtras v1.2.0 [739be429] MbedTLS v1.1.9 [4d8831e6] OpenSSL v1.6.1 [aea7be01] PrecompileTools v1.3.3 [21216c6a] Preferences v1.5.1 [b3c3ace0] RangeArrays v0.3.2 [777ac1f9] SimpleBufferStream v1.2.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [c8ffd9c3] MbedTLS_jll v2.28.1010+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.4+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 Testing Running tests... Test Summary: | Pass Total Time Elements - Table 1 | 3 3 35.3s Test Summary: | Pass Total Time Compounds | 1 1 0.2s Test Summary: | Pass Total Time Mixtures | 1 1 0.7s Test Summary: | Pass Total Time Materials - Table 2 | 3 3 2.0s [ Info: A-150 Tissue-Equivalent Plastic [ Info: Adipose Tissue (ICRU-44) [ Info: Air, Dry (near sea level) [ Info: Alanine [ Info: B-100 Bone-Equivalent Plastic [ Info: Bakelite [ Info: Blood, Whole (ICRU-44) [ Info: Bone, Cortical (ICRU-44) [ Info: Brain, Grey/White Matter (ICRU-44) [ Info: Breast Tissue (ICRU-44) [ Info: C-552 Air-equivalent Plastic [ Info: Cadmium Telluride [ Info: Calcium Fluoride [ Info: Calcium Sulfate [ Info: 15 mmol L-1 Ceric Ammonium Sulfate Solution [ Info: Cesium Iodide [ Info: Concrete, Ordinary [ Info: Concrete, Barite (TYPE BA) [ Info: Eye Lens (ICRU-44) [ Info: Ferrous Sulfate Standard Fricke [ Info: Gadolinium Oxysulfide [ Info: Gafchromic Sensor [ Info: Gallium Arsenide [ Info: Glass, Borosilicate (Pyrex) [ Info: Glass, Lead [ Info: Lithium Fluride [ Info: Lithium Tetraborate [ Info: Lung Tissue (ICRU-44) [ Info: Magnesium Tetroborate [ Info: Mercuric Iodide [ Info: Muscle, Skeletal (ICRU-44) [ Info: Ovary (ICRU-44) [ Info: Photographic Emulsion (Kodak Type AA) [ Info: Photographic Emulsion (Standard Nuclear) [ Info: Plastic Scintillator, Vinyltoluene [ Info: Polyethylene [ Info: Polyethylene Terephthalate, (Mylar) [ Info: Polymethyl Methacrylate [ Info: Polystyrene [ Info: Polytetrafluoroethylene, (Teflon) [ Info: Polyvinyl Chloride [ Info: Radiochromic Dye Film, Nylon Base [ Info: Testis (ICRU-44) [ Info: Tissue, Soft (ICRU-44) [ Info: Tissue, Soft (ICRU Four-Component) [ Info: Tissue-Equivalent Gas, Methane Based [ Info: Tissue-Equivalent Gas, Propane Based [ Info: Water, Liquid [ Info: NCAT Adipose [ Info: NCAT Air [ Info: NCAT Aluminum [ Info: NCAT Bladder [ Info: NCAT Blood [ Info: NCAT Brain [ Info: NCAT Breast Mammary [ Info: NCAT Cartilage [ Info: NCAT Dry Rib [ Info: NCAT Dry Spine [ Info: NCAT Eye Lens [ Info: NCAT Graphite [ Info: NCAT Heart [ Info: NCAT Intestine [ Info: NCAT Iodine [ Info: NCAT Blood with 0.8% Iodine [ Info: NCAT Iron [ Info: NCAT Kidney [ Info: NCAT Lead [ Info: NCAT Liver [ Info: NCAT Lung [ Info: NCAT Lymph [ Info: NCAT Muscle [ Info: NCAT Ovary [ Info: NCAT Pancreas [ Info: NCAT PMMA [ Info: NCAT Red Marrow [ Info: NCAT Skin [ Info: NCAT Skull [ Info: NCAT Spleen [ Info: NCAT Testis [ Info: NCAT Thyroid [ Info: NCAT Titanium [ Info: NCAT Water [ Info: NCAT Yellow Marrow [ Info: NCAT Blood with 0.7% Iodine [ Info: NCAT Blood with 0.9% Iodine [ Info: NCAT Blood with 1.0% Iodine [ Info: NCAT Blood with 1.1% Iodine [ Info: NCAT Blood with 2.0% Iodine [ Info: NCAT Blood with 3.0% Iodine [ Info: Omnipaque 350 [ Info: Omnipaque 300 [ Info: I-2 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 1.002 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: I-2.5 mg/mL [ Info: I-5 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.999 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: I-7.5 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.996 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: I-10 mg/mL [ Info: I-15 mg/mL [ Info: I-20 mg/mL [ Info: I-30 mg/mL (Extrapolated) [ Info: I-40 mg/mL (Extrapolated) [ Info: I-50 mg/mL (Extrapolated) [ Info: Ca-50 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.9400000000000001 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-100 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.9729999999999999 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-200 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.9550000000000001 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-300 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.9570000000000002 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-400 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.971 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-500 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.976 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Ca-600 mg/mL Materials - composition sum to one: Test Failed at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 Expression: ≈((m.composition |> values) |> sum, 1, atol = 0.0001) Evaluated: 0.978 ≈ 1 (atol=0.0001) Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:31 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [4] top-level scope @ ~/.julia/packages/Attenuations/SqGnv/test/runtests.jl:29 [ Info: Basis Water [ Info: Basis Lipid [ Info: Basis Collagen [ Info: Basis Hydroxyapatite [ Info: Basis Air Test Summary: | Pass Fail Total Time Materials - composition sum to one | 103 10 113 4.9s RNG of the outermost testset: Random.Xoshiro(0xdd6ea702dbb5b36b, 0xf3481be1602dbea9, 0x522c6f420da7c75b, 0xad8b035597e461f7, 0x10f23e4867c481ee) ERROR: LoadError: Some tests did not pass: 103 passed, 10 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/Attenuations/SqGnv/test/runtests.jl:28 Testing failed after 58.21s ERROR: LoadError: Package Attenuations errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 232.89s: package has test failures