Package evaluation to test ACEfit on Julia 1.12.4 (422f456051*) started at 2026-01-29T09:06:26.769 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.12` Set-up completed after 8.13s ################################################################################ # Installation # Installing ACEfit... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [ad31a8ef] + ACEfit v0.3.0 Updating `~/.julia/environments/v1.12/Manifest.toml` [ad31a8ef] + ACEfit v0.3.0 [47edcb42] + ADTypes v1.21.0 [621f4979] + AbstractFFTs v1.5.0 [d86c1dc8] + ActiveSetPursuit v0.0.4 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.6 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [898213cb] + LowRankApprox v0.5.5 [e65ccdef] + LowRankMatrices v1.0.2 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [2dcacdae] + ParallelDataTransfer v0.5.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [29d2ae51] + QRupdate v1.0.1 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [892a3eda] + StringManipulation v0.4.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.15.0+0 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.05s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.12/activate_set.jl:78 Precompiling package dependencies... Precompiling packages... 8396.2 ms ✓ ActiveSetPursuit 56367.6 ms ✓ PythonCall → CategoricalArraysExt 35007.2 ms ✓ MLJLinearModels 150931.4 ms ✓ ACEfit 89168.4 ms ✓ ACEfit → ACEfit_PythonCall_ext 350500.4 ms ✓ ACEfit → ACEfit_MLJLinearModels_ext 162949.9 ms ✓ ACEfit → ACEfit_MLJScikitLearnInterface_ext 7 dependencies successfully precompiled in 865 seconds. 216 already precompiled. 2 dependencies had output during precompilation: ┌ PythonCall → CategoricalArraysExt │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/xHP4R/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/ACEfit/IRtHL/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml │ CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml │ CondaPkg Resolving changes │ + libstdcxx │ + libstdcxx-ng │ + openssl │ + python │ + scikit-learn │ CondaPkg Initialising pixi │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ init │ │ --format pixi │ └ /tmp/jl_ZMxwaB/.CondaPkg │ ✔ Created /tmp/jl_ZMxwaB/.CondaPkg/pixi.toml │ CondaPkg Wrote /tmp/jl_ZMxwaB/.CondaPkg/pixi.toml │ │ [dependencies] │ │ openssl = ">=3, <3.6" │ │ libstdcxx = ">=3.4,<15.0" │ │ libstdcxx-ng = ">=3.4,<15.0" │ │ │ │ [dependencies.scikit-learn] │ │ channel = "conda-forge" │ │ version = ">=1.4, <1.6" │ │ │ │ [dependencies.python] │ │ channel = "conda-forge" │ │ build = "*cp*" │ │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.8" │ │ │ │ [project] │ │ name = ".CondaPkg" │ │ platforms = ["linux-64"] │ │ channels = ["conda-forge"] │ │ channel-priority = "strict" │ └ description = "automatically generated by CondaPkg.jl" │ CondaPkg Installing packages │ │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ │ install │ └ --manifest-path /tmp/jl_ZMxwaB/.CondaPkg/pixi.toml │ ✔ The default environment has been installed. └ ┌ ACEfit │ WARNING: Constructor for type "Array" was extended in `LowRankApprox` without explicit qualification or import. │ NOTE: Assumed "Array" refers to `Base.Array`. This behavior is deprecated and may differ in future versions.` │ NOTE: This behavior may have differed in Julia versions prior to 1.12. │ Hint: If you intended to create a new generic function of the same name, use `function Array end`. │ Hint: To silence the warning, qualify `Array` as `Base.Array` in the method signature or explicitly `import Base: Array`. └ Precompilation completed after 868.98s ################################################################################ # Testing # Testing ACEfit Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_JZ78AN/Project.toml` [ad31a8ef] + ACEfit v0.3.0 ⌃ [add582a8] + MLJ v0.19.5 ⌃ [6ee0df7b] + MLJLinearModels v0.9.2 [5ae90465] + MLJScikitLearnInterface v0.7.0 [6099a3de] + PythonCall v0.9.31 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_JZ78AN/Manifest.toml` [ad31a8ef] + ACEfit v0.3.0 [47edcb42] + ADTypes v1.21.0 ⌃ [da404889] + ARFFFiles v1.5.0 [621f4979] + AbstractFFTs v1.5.0 [d86c1dc8] + ActiveSetPursuit v0.0.4 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [d1d4a3ce] + BitFlags v0.1.9 ⌅ [324d7699] + CategoricalArrays v0.10.9 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.18.1 [ed09eef8] + ComputationalResources v0.3.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [992eb4ea] + CondaPkg v0.2.33 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.15 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [792122b4] + EarlyStopping v0.3.0 [4e289a0a] + EnumX v1.0.6 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [7a1cc6ca] + FFTW v1.10.0 [9aa1b823] + FastClosures v0.3.2 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.3.1 [cd3eb016] + HTTP v1.10.19 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [b3c1a2ee] + IterationControl v0.5.4 [42fd0dbc] + IterativeSolvers v0.9.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 [a5e1c1ea] + LatinHypercubeSampling v1.9.0 ⌃ [d3d80556] + LineSearches v7.5.1 [7a12625a] + LinearMaps v3.11.4 [5c8ed15e] + LinearOperators v2.11.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 ⌅ [30fc2ffe] + LossFunctions v0.11.2 [898213cb] + LowRankApprox v0.5.5 [e65ccdef] + LowRankMatrices v1.0.2 ⌅ [64a0f543] + MLFlowClient v0.4.7 ⌃ [add582a8] + MLJ v0.19.5 ⌅ [a7f614a8] + MLJBase v0.21.14 ⌅ [50ed68f4] + MLJEnsembles v0.3.3 ⌅ [7b7b8358] + MLJFlow v0.1.1 ⌅ [614be32b] + MLJIteration v0.5.1 ⌃ [6ee0df7b] + MLJLinearModels v0.9.2 [e80e1ace] + MLJModelInterface v1.12.1 ⌅ [d491faf4] + MLJModels v0.16.17 [5ae90465] + MLJScikitLearnInterface v0.7.0 ⌅ [03970b2e] + MLJTuning v0.7.4 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [0b3b1443] + MicroMamba v0.1.14 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [4d1e1d77] + Nullables v1.0.0 [8b6db2d4] + OpenML v0.3.3 [4d8831e6] + OpenSSL v1.6.1 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [2dcacdae] + ParallelDataTransfer v0.5.1 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.3 [21216c6a] + Preferences v1.5.1 [54e16d92] + PrettyPrinting v0.4.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [6099a3de] + PythonCall v0.9.31 [29d2ae51] + QRupdate v1.0.1 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 ⌃ [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [a759f4b9] + TimerOutputs v0.5.29 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [e17b2a0c] + UnsafePointers v1.0.0 [f5851436] + FFTW_jll v3.3.11+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [856f044c] + MKL_jll v2025.2.0+0 [c8ffd9c3] + MbedTLS_jll v2.28.1010+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [f8abcde7] + micromamba_jll v1.5.12+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.12.1 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] ~ Test ⇒ v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.15.0+0 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.11.4 [05823500] + OpenLibm_jll v0.8.7+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.64.0+1 [3f19e933] + p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_JZ78AN/Project.toml` [ad31a8ef] ACEfit v0.3.0 ⌃ [add582a8] MLJ v0.19.5 ⌃ [6ee0df7b] MLJLinearModels v0.9.2 [5ae90465] MLJScikitLearnInterface v0.7.0 [6099a3de] PythonCall v0.9.31 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JZ78AN/Manifest.toml` [ad31a8ef] ACEfit v0.3.0 [47edcb42] ADTypes v1.21.0 ⌃ [da404889] ARFFFiles v1.5.0 [621f4979] AbstractFFTs v1.5.0 [d86c1dc8] ActiveSetPursuit v0.0.4 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [d1d4a3ce] BitFlags v0.1.9 ⌅ [324d7699] CategoricalArrays v0.10.9 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 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LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.11.4 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.7+0 [458c3c95] OpenSSL_jll v3.5.4+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.15.0+0 [8e850ede] nghttp2_jll v1.64.0+1 [3f19e933] p7zip_jll v17.7.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: Test committee creation with bayesian_ridge_regression_svd. ┌ Warning: Why is such a large committee required? └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_bayesianlinear.jl:8 [ Info: Entering bayesian_linear_regression_svd ┌ Info: Computing SVD of (3, 3) matrix │ BLAS.get_num_threads() = 1 │ BLAS.get_config() = │ LinearAlgebra.BLAS.LBTConfig │ Libraries: └ └ [ILP64] libopenblas64_.so [ Info: SVD completed after 4.90395e-6 minutes [ Info: Beginning to maximize marginal likelihood ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Info: Optimization complete │ Results = │ * Status: success │ │ * Candidate solution │ Final objective value: 4.244509e+00 │ │ * Found with │ Algorithm: L-BFGS │ │ * Convergence measures │ |x - x'| = 2.29e-09 ≤ 1.0e-08 │ |x - x'|/|x'| = 2.42e-09 ≰ 0.0e+00 │ |f(x) - f(x')| = 0.00e+00 ≤ 0.0e+00 │ |f(x) - f(x')|/|f(x')| = 0.00e+00 ≤ 0.0e+00 │ |g(x)| = 8.72e-15 ≰ 0.0e+00 │ │ * Work counters │ Seconds run: 1 (vs limit Inf) │ Iterations: 10 │ f(x) calls: 26 │ ∇f(x) calls: 26 └ [ Info: Test error from invalid committee request. CondaPkg Found dependencies: /home/pkgeval/.julia/packages/MLJScikitLearnInterface/xHP4R/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/ACEfit/IRtHL/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml CondaPkg Resolving changes + libstdcxx + libstdcxx-ng + openssl + python + scikit-learn CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_JZ78AN/.CondaPkg ✔ Created /tmp/jl_JZ78AN/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_JZ78AN/.CondaPkg/pixi.toml │ [dependencies] │ openssl = ">=3, <3.6" │ libstdcxx = ">=3.4,<15.0" │ libstdcxx-ng = ">=3.4,<15.0" │ │ [dependencies.scikit-learn] │ channel = "conda-forge" │ version = ">=1.4, <1.6" │ │ [dependencies.python] │ channel = "conda-forge" │ build = "*cp*" │ version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.8" │ │ [project] │ name = ".CondaPkg" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ channel-priority = "strict" └ description = "automatically generated by CondaPkg.jl" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_JZ78AN/.CondaPkg/pixi.toml ✔ The default environment has been installed. [ Info: Test Solver on overdetermined system [ Info: ... QR norm(A * C - y) = 9.940851302615293e-6 norm(C) = 9.807777387369786 norm(C - c_ref) = 0.00032917802327976485 [ Info: ... regularised QR, λ = 1e-5 norm(A * C - y) = 1.0850212959645269e-5 norm(C) = 9.799903430116403 norm(C - c_ref) = 0.04376441312160622 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:42 Expression: norm(C - c_ref) < 1000 * epsn Evaluated: 0.04376441312160622 < 0.01 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: ... regularised QR, λ = 1e-2 norm(A * C - y) = 0.026980037973599116 norm(C) = 9.147607509327589 norm(C - c_ref) = 2.938232545310287 [ Info: ... RRQR, rtol = 1e-15 norm(A * C - y) = 9.940851302613102e-6 norm(C) = 9.807777387369722 norm(C - c_ref) = 0.00032917802362960843 [ Info: ... RRQR, rtol = 1e-5 norm(A * C - y) = 9.94085130261113e-6 norm(C) = 9.807777387369828 norm(C - c_ref) = 0.0003291780230415831 [ Info: ... RRQR, rtol = 1e-3 norm(A * C - y) = 0.0004843513026545283 norm(C) = 9.639953386464496 norm(C - c_ref) = 1.8118858943857714 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:94 Expression: norm(C - c_ref) < 1 Evaluated: 1.8118858943857714 < 1 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: ... LSQR ┌ Warning: Need to apply preconditioner in LSQR. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:95 damp 0 atol 1.0e-6 maxiter 100000 Converged after 336 iterations. relative RMS error 2.3813406399403676e-5 norm(A * C - y) = 9.149153327900222e-5 norm(C) = 9.733741582810525 norm(C - c_ref) = 0.46354797082511406 [ Info: ... SKLEARN_BRR ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:132 [ Info: Entering SKLEARN_BRR [ Info: BRR converged to tol=0.001 after 6 iterations. norm(A * C - y) = 1.0608040313400232e-5 norm(C) = 9.801059461938419 norm(C - c_ref) = 0.03732007537658628 [ Info: ... SKLEARN_ARD ┌ Warning: SKLearn will transition to MLJ in future, please upgrade your script to reflect this. └ @ ACEfit ~/.julia/packages/ACEfit/IRtHL/src/solvers.jl:148 [ Info: ARD converged to tol=0.001 after 7 iterations. norm(A * C - y) = 0.0063859125470615615 norm(C) = 9.464728595975437 norm(C - c_ref) = 1.6812932371303233 [ Info: ... BLR ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-8) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Iter Function value Gradient norm 0 9.201622e+03 9.980736e+03 * time: 0.09871602058410645 1 -6.792193e+02 2.682194e+04 * time: 0.9441020488739014 2 -4.344267e+03 3.873060e+04 * time: 0.9478409290313721 3 -1.369916e+04 9.912699e+04 * time: 0.9556231498718262 4 -1.940147e+04 1.760110e+05 * time: 0.9593830108642578 5 -2.527239e+04 3.181240e+05 * time: 0.9651241302490234 6 -3.007816e+04 5.165689e+05 * time: 0.9705901145935059 7 -4.388518e+04 2.080534e+06 * time: 0.9762859344482422 8 -7.655005e+04 4.633139e+07 * time: 0.986083984375 9 -7.891878e+04 4.944824e+07 * time: 1.000715970993042 10 -8.202875e+04 1.389405e+07 * time: 1.0049660205841064 11 -8.212926e+04 7.455516e+04 * time: 1.0089380741119385 12 -8.212926e+04 5.510780e+00 * time: 1.0136079788208008 13 -8.212926e+04 3.893976e+04 * time: 1.6084251403808594 14 -8.212934e+04 3.188081e+03 * time: 1.6155600547790527 15 -8.212934e+04 1.604275e+02 * time: 1.6185600757598877 16 -8.212934e+04 3.907851e-02 * time: 1.621415138244629 17 -8.212934e+04 1.247597e-06 * time: 1.6242899894714355 * Status: success * Candidate solution Final objective value: -8.212934e+04 * Found with Algorithm: L-BFGS * Convergence measures |x - x'| = 4.64e-09 ≤ 1.0e-08 |x - x'|/|x'| = 4.78e-09 ≰ 0.0e+00 |f(x) - f(x')| = 3.08e-08 ≰ 0.0e+00 |f(x) - f(x')|/|f(x')| = 3.75e-13 ≰ 0.0e+00 |g(x)| = 1.25e-06 ≰ 0.0e+00 * Work counters Seconds run: 2 (vs limit Inf) Iterations: 17 f(x) calls: 89 ∇f(x) calls: 89 norm(A * C - y) = 9.326182639774368e-5 norm(C) = 9.680746459095253 norm(C - c_ref) = 0.9252331490089599 [ Info: ... TruncatedSVD(; rtol = 1e-5) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 9.940851302615913e-6 norm(C) = 9.80777738736998 norm(C - c_ref) = 0.00032917802216262364 [ Info: ... TruncatedSVD(; rtol = 1e-4) Truncted SVD: perform svd ... done. truncation ... done. norm(A * C - y) = 0.00017990008272596704 norm(C) = 9.641886504008568 norm(C - c_ref) = 1.7965692571672602 Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:165 Expression: norm(A * C - y) < 10 * epsn Evaluated: 0.00017990008272596704 < 0.0001 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] Linear Solvers: Test Failed at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:166 Expression: norm(C - c_ref) < 1 Evaluated: 1.7965692571672602 < 1 Stacktrace: [1] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/test_linearsolvers.jl:516 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:680 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:307 [4] top-level scope @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:5 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [6] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [7] macro expansion @ /opt/julia/share/julia/stdlib/v1.12/Test/src/Test.jl:1776 [inlined] [8] macro expansion @ ~/.julia/packages/ACEfit/IRtHL/test/runtests.jl:9 [inlined] [ Info: Truncated SVD with validation err_v = norm(Av * results_v["C"] - yv) = 4.573667541967411e-6 err = norm(Av * results["C"] - yv) = 8.144681778542935e-5 norm(results_v["C"] - c_ref) = 0.00010430576416522213 norm(results["C"] - c_ref) = 1.7965692571672602 [ Info: Test Solver on overdetermined system ┌ Warning: Assignment to `solver` in soft scope is ambiguous because a global variable by the same name exists: `solver` will be treated as a new local. Disambiguate by using `local solver` to suppress this warning or `global solver` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:32 ┌ Warning: Assignment to `results` in soft scope is ambiguous because a global variable by the same name exists: `results` will be treated as a new local. Disambiguate by using `local results` to suppress this warning or `global results` to assign to the existing global variable. └ @ ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:33 Test PassedTest PassedTest PassedTest PassedTest PassedTest Passedselect = :final [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:byerror, 1.3) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = (:bysize, 73) [ Info: ASP: tsvd made improvements! [ Info: ASP (val): tsvd made improvements! select = :final [ Info: OMP: tsvd made improvements! ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 select = (:byerror, 1.3) [ Info: OMP: tsvd made improvements! ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 select = (:bysize, 73) ┌ Warning: OMP: tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:115 ┌ Warning: OMP (val): tsvd did NOT make any improvements! └ @ Main ~/.julia/packages/ACEfit/IRtHL/test/test_asp.jl:121 [ Info: All tests completed for ASP and OMP solvers. Precompiling packages... 4280.3 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 13819.0 ms ✓ PythonCall → CategoricalArraysExt 2 dependencies successfully precompiled in 19 seconds. 57 already precompiled. [ Info: Test MLJ interface on overdetermined system [ Info: ... MLJLinearModels LinearRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LinearRegressor(fit_intercept = true, …), …). ┌ Info: Solver: MLJLinearModels.Analytical │ iterative: Bool false └ max_inner: Int64 200 norm(A * C - y) = 99.657268452434 norm(C) = 9.917883223000967 [ Info: ... MLJLinearModels LassoRegressor [ Info: For silent loading, specify `verbosity=0`. import MLJLinearModels ✔ [ Info: Training machine(LassoRegressor(lambda = 1.0, …), …). ┌ Info: Solver: MLJLinearModels.ProxGrad │ accel: Bool true │ max_iter: Int64 1000 │ tol: Float64 0.0001 │ max_inner: Int64 100 └ beta: Float64 0.8 norm(A * C - y) = 100.1440332606994 norm(C) = 0.0 [ Info: ... MLJ SKLearn ARD [ Info: For silent loading, specify `verbosity=0`. import MLJScikitLearnInterface ✔ [ Info: Training machine(ARDRegressor(max_iter = 300, …), …). norm(A * C - y) = 99.8422790656013 norm(C) = 5.691050531985699 Test Summary: | Pass Fail Total Time ACEfit.jl | 55 4 59 7m15.9s Iterate | 0 0.1s Bayesian Linear | 3 3 30.0s Linear Solvers | 18 4 22 2m08.6s ASP | 34 34 2m53.3s MLJ Solvers | 0 1m43.8s RNG of the outermost testset: Xoshiro(0x7bad7e428ee6a4b6, 0x11b081de9df509a1, 0x48b83cc9de0ac20a, 0x5bb442b2e43c856b, 0x9e4606b3fca331b8) ERROR: LoadError: Some tests did not pass: 55 passed, 4 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/ACEfit/IRtHL/test/runtests.jl:4 Testing failed after 461.31s ERROR: LoadError: Package ACEfit errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2535 [3] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2384 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:538 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:169 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [7] test @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:157 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.12/Pkg/src/API.jl:156 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 [10] include(mod::Module, _path::String) @ Base ./Base.jl:306 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:317 [12] _start() @ Base ./client.jl:550 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1393.35s: package has test failures