Package evaluation of ViennaRNA on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-16T23:49:02.828 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.57s ################################################################################ # Installation # Installing ViennaRNA... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [05a721ad] + ViennaRNA v0.11.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [fa961155] + CEnum v0.5.0 [692b3bcd] + JLLWrappers v1.7.0 [21216c6a] + Preferences v1.4.3 [1986cc42] + Unitful v1.23.1 [e17b2a0c] + UnsafePointers v1.0.0 [05a721ad] + ViennaRNA v0.11.2 ⌅ [1b77fbbe] + GSL_jll v2.7.2+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [2f80f16e] + PCRE_jll v8.45.0+0 [b7a990de] + ViennaRNA_jll v2.6.4+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [781609d7] + GMP_jll v6.3.0+2 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [3a97d323] + MPFR_jll v4.2.2+0 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 32.17s ################################################################################ # Testing # Testing ViennaRNA Status `/tmp/jl_hvRP4f/Project.toml` [4c88cf16] Aqua v0.8.13 [fa961155] CEnum v0.5.0 [1986cc42] Unitful v1.23.1 [e17b2a0c] UnsafePointers v1.0.0 [05a721ad] ViennaRNA v0.11.2 [b7a990de] ViennaRNA_jll v2.6.4+0 [8dfed614] Test v1.11.0 Status `/tmp/jl_hvRP4f/Manifest.toml` [4c88cf16] Aqua v0.8.13 [fa961155] CEnum v0.5.0 [34da2185] Compat v4.17.0 [692b3bcd] JLLWrappers v1.7.0 [21216c6a] Preferences v1.4.3 [1986cc42] Unitful v1.23.1 [e17b2a0c] UnsafePointers v1.0.0 [05a721ad] ViennaRNA v0.11.2 ⌅ [1b77fbbe] GSL_jll v2.7.2+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [2f80f16e] PCRE_jll v8.45.0+0 [b7a990de] ViennaRNA_jll v2.6.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [781609d7] GMP_jll v6.3.0+2 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [3a97d323] MPFR_jll v4.2.2+0 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... testing ViennaRNA testing Aqua.test_all testing params_{load*,save} WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking enthalpies not symmetric WARNING: stacking energies not symmetric WARNING: stacking energies not symmetric WARNING: stacking energies not symmetric WARNING: stacking energies not symmetric testing FoldCompound testing FoldCompound dp matrices testing mfe matrices testing partfn matrices testing Pairtable testing bpp testing bp_distance testing centroid testing energy testing ensemble_defect testing heat_capacity testing inverse_fold testing mea testing mean_bp_distance testing mfe testing mfe_window testing mfe_window_channel testing neighbors testing partfn testing plot_coords testing prob_of_structure testing sample_structures testing sc_mod_* testing subopt testing subopt_zuker testing tree_edit_dist testing prob_of_basepairs Test Summary: | Pass Total Time ViennaRNA | 718 718 2m09.1s Aqua.test_all | 11 11 1m24.6s params_{load*,save} | 18 18 6.7s FoldCompound | 186 186 4.1s FoldCompound dp matrices | 31 31 3.1s Pairtable | 22 22 1.3s bpp | 5 5 1.0s bp_distance | 2 2 0.0s centroid | 3 3 0.1s energy | 12 12 1.6s ensemble_defect | 6 6 0.1s heat_capacity | 8 8 0.9s init_rand_seed | 1 1 0.0s inverse_fold | 4 4 0.3s mea | 7 7 0.2s mean_bp_distance | 3 3 0.1s mfe | 3 3 0.0s mfe_window | 4 4 0.4s mfe_window_channel | 4 4 0.7s neighbors | 1 1 0.6s partfn | 2 2 0.0s plot_coords | 338 338 2.0s prob_of_structure | 3 3 0.1s sample_structures | 24 24 0.4s sc_mod_* | 12 12 0.9s subopt | 4 4 0.3s subopt_zuker | 2 2 0.1s tree_edit_dist | 1 1 0.1s prob_of_basepairs | 1 1 1.6s Testing ViennaRNA tests passed Testing completed after 137.19s PkgEval succeeded after 193.41s