Package evaluation of SampleChainsDynamicHMC on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-17T06:38:01.993 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.9s ################################################################################ # Installation # Installing SampleChainsDynamicHMC... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [6d9fd711] + SampleChainsDynamicHMC v0.3.5 Updating `~/.julia/environments/v1.13/Manifest.toml` [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [dce04be8] + ArgCheck v2.5.0 ⌅ [4c555306] + ArrayLayouts v0.8.19 ⌅ [65a8f2f4] + ArraysOfArrays v0.5.0 ⌅ [198e06fe] + BangBang v0.3.40 [49dc2e85] + Calculus v0.5.2 [d360d2e6] + ChainRulesCore v1.25.2 [9e997f8a] + ChangesOfVariables v0.1.10 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 ⌃ [bbc10e6e] + DynamicHMC v3.3.0 [fdbdab4c] + ElasticArrays v1.2.12 ⌅ [1a297f60] + FillArrays v0.13.11 ⌅ [f6369f11] + ForwardDiff v0.10.38 [46192b85] + GPUArraysCore v0.2.0 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 ⌅ [5078a376] + LazyArrays v0.22.18 [1fad7336] + LazyStack v0.1.3 ⌅ [6fdf6af0] + LogDensityProblems v0.11.5 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [6e857e4b] + MCMCDiagnostics v0.3.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 ⌅ [a3b82374] + MatrixFactorizations v0.9.6 [eff96d63] + Measurements v2.14.0 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [d9ec5142] + NamedTupleTools v0.14.3 ⌃ [a734d2a7] + NestedTuples v0.3.10 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [d96e819e] + Parameters v0.12.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [92933f4c] + ProgressMeter v1.10.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [754583d1] + SampleChains v0.5.1 [6d9fd711] + SampleChainsDynamicHMC v0.3.5 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 ⌅ [aedffcd0] + Static v0.6.6 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 ⌅ [2913bbd2] + StatsBase v0.33.21 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.1 ⌅ [09ab397b] + StructArrays v0.6.21 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [02d47bb6] + TensorCast v0.4.9 ⌅ [84d833dd] + TransformVariables v0.6.4 [24ddb15e] + TransmuteDims v0.1.17 [9d95972d] + TupleTools v1.6.0 ⌅ [615932cf] + TupleVectors v0.1.5 [3a884ed6] + UnPack v1.0.2 [c4a57d5a] + UnsafeArrays v1.0.8 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.52s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 146.32s ################################################################################ # Testing # Testing SampleChainsDynamicHMC Status `/tmp/jl_C4IpiR/Project.toml` [2569d6c7] ConcreteStructs v0.2.3 ⌃ [bbc10e6e] DynamicHMC v3.3.0 [fdbdab4c] ElasticArrays v1.2.12 ⌅ [6fdf6af0] LogDensityProblems v0.11.5 [dbb5928d] MappedArrays v0.4.2 ⌃ [a734d2a7] NestedTuples v0.3.10 [189a3867] Reexport v1.2.2 [37e2e3b7] ReverseDiff v1.16.1 [754583d1] SampleChains v0.5.1 [6d9fd711] SampleChainsDynamicHMC v0.3.5 ⌅ [09ab397b] StructArrays v0.6.21 ⌅ [84d833dd] TransformVariables v0.6.4 ⌅ [615932cf] TupleVectors v0.1.5 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_C4IpiR/Manifest.toml` [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [dce04be8] ArgCheck v2.5.0 ⌅ [4c555306] ArrayLayouts v0.8.19 ⌅ [65a8f2f4] ArraysOfArrays v0.5.0 ⌅ [198e06fe] BangBang v0.3.40 [49dc2e85] Calculus v0.5.2 [d360d2e6] ChainRulesCore v1.25.2 [9e997f8a] ChangesOfVariables v0.1.10 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 ⌃ [bbc10e6e] DynamicHMC v3.3.0 [fdbdab4c] ElasticArrays v1.2.12 ⌅ [1a297f60] FillArrays v0.13.11 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [615f187c] IfElse v0.1.1 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b14d175d] JuliaVariables v0.2.4 ⌅ [5078a376] LazyArrays v0.22.18 [1fad7336] LazyStack v0.1.3 ⌅ [6fdf6af0] LogDensityProblems v0.11.5 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [6e857e4b] MCMCDiagnostics v0.3.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 ⌅ [a3b82374] MatrixFactorizations v0.9.6 [eff96d63] Measurements v2.14.0 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [d9ec5142] NamedTupleTools v0.14.3 ⌃ [a734d2a7] NestedTuples v0.3.10 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [92933f4c] ProgressMeter v1.10.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [37e2e3b7] ReverseDiff v1.16.1 [754583d1] SampleChains v0.5.1 [6d9fd711] SampleChainsDynamicHMC v0.3.5 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 ⌅ [aedffcd0] Static v0.6.6 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 ⌅ [2913bbd2] StatsBase v0.33.21 [5e0ebb24] Strided v2.3.2 [4db3bf67] StridedViews v0.4.1 ⌅ [09ab397b] StructArrays v0.6.21 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [02d47bb6] TensorCast v0.4.9 ⌅ [84d833dd] TransformVariables v0.6.4 [24ddb15e] TransmuteDims v0.1.17 [9d95972d] TupleTools v1.6.0 ⌅ [615932cf] TupleVectors v0.1.5 [3a884ed6] UnPack v1.0.2 [c4a57d5a] UnsafeArrays v1.0.8 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 49989.4 ms ✓ ReverseDiff 1 dependency successfully precompiled in 50 seconds. 32 already precompiled. ┌ Info: found initial stepsize └ ϵ = 1.12 ┌ Info: Starting MCMC │ total_steps = 75 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 7.7e-5 │ estimated_seconds_left = 0.0057 └ ϵ = 1.12 ┌ Info: Starting MCMC │ total_steps = 25 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 9.7e-5 │ estimated_seconds_left = 0.0023 └ ϵ = 0.242 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [1.0261010422771792, 0.7183138534126505] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00028 │ estimated_seconds_left = 0.014 └ ϵ = 0.193 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.5339507983988641, 0.9747293470916087] ┌ Info: Starting MCMC │ total_steps = 100 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.02 └ ϵ = 0.219 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.7418824196014259, 1.005009415610241] ┌ Info: Starting MCMC │ total_steps = 200 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00012 │ estimated_seconds_left = 0.024 └ ϵ = 0.212 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00031 │ estimated_seconds_left = 0.031 └ ϵ = 0.117 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.6253893488922225, 0.8462043163839681] ┌ Info: Starting MCMC │ total_steps = 400 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00011 │ estimated_seconds_left = 0.044 └ ϵ = 0.274 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00021 │ estimated_seconds_left = 0.062 └ ϵ = 0.522 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.04 └ ϵ = 0.161 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.025 └ ϵ = 0.259 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [0.8906428593647866, 0.9193244355262017] ┌ Info: Starting MCMC │ total_steps = 800 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00021 │ estimated_seconds_left = 0.17 └ ϵ = 0.232 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00029 │ estimated_seconds_left = 0.2 └ ϵ = 0.387 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00021 │ estimated_seconds_left = 0.13 └ ϵ = 0.292 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00023 │ estimated_seconds_left = 0.11 └ ϵ = 0.117 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00022 │ estimated_seconds_left = 0.089 └ ϵ = 0.382 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.06 └ ϵ = 0.389 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.04 └ ϵ = 0.165 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.00021 │ estimated_seconds_left = 0.021 └ ϵ = 0.338 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [1.0750528857894341, 0.7836761036557619] ┌ Info: Starting MCMC │ total_steps = 1600 └ tuning = "stepsize and Symmetric metric" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 5.7e-5 │ estimated_seconds_left = 0.091 └ ϵ = 0.292 ┌ Info: MCMC progress │ step = 101 │ seconds_per_step = 0.00025 │ estimated_seconds_left = 0.37 └ ϵ = 0.203 ┌ Info: MCMC progress │ step = 201 │ seconds_per_step = 0.00022 │ estimated_seconds_left = 0.31 └ ϵ = 0.103 ┌ Info: MCMC progress │ step = 301 │ seconds_per_step = 0.00027 │ estimated_seconds_left = 0.36 └ ϵ = 0.264 ┌ Info: MCMC progress │ step = 401 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.31 └ ϵ = 0.285 ┌ Info: MCMC progress │ step = 501 │ seconds_per_step = 0.00017 │ estimated_seconds_left = 0.19 └ ϵ = 0.158 ┌ Info: MCMC progress │ step = 601 │ seconds_per_step = 0.00076 │ estimated_seconds_left = 0.76 └ ϵ = 0.506 ┌ Info: MCMC progress │ step = 701 │ seconds_per_step = 0.00022 │ estimated_seconds_left = 0.19 └ ϵ = 0.224 ┌ Info: MCMC progress │ step = 801 │ seconds_per_step = 0.00019 │ estimated_seconds_left = 0.15 └ ϵ = 0.268 ┌ Info: MCMC progress │ step = 901 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.18 └ ϵ = 0.297 ┌ Info: MCMC progress │ step = 1001 │ seconds_per_step = 0.00023 │ estimated_seconds_left = 0.14 └ ϵ = 0.0816 ┌ Info: MCMC progress │ step = 1101 │ seconds_per_step = 0.00025 │ estimated_seconds_left = 0.13 └ ϵ = 0.107 ┌ Info: MCMC progress │ step = 1201 │ seconds_per_step = 0.00022 │ estimated_seconds_left = 0.089 └ ϵ = 0.331 ┌ Info: MCMC progress │ step = 1301 │ seconds_per_step = 0.0002 │ estimated_seconds_left = 0.059 └ ϵ = 0.157 ┌ Info: MCMC progress │ step = 1401 │ seconds_per_step = 0.00026 │ estimated_seconds_left = 0.051 └ ϵ = 0.16 ┌ Info: MCMC progress │ step = 1501 │ seconds_per_step = 0.00019 │ estimated_seconds_left = 0.019 └ ϵ = 0.2 ┌ Info: adaptation finished └ adapted_kinetic_energy = Gaussian kinetic energy (Symmetric), √diag(M⁻¹): [1.0781682093996185, 0.8082484087947143] ┌ Info: Starting MCMC │ total_steps = 50 └ tuning = "stepsize" ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00011 │ estimated_seconds_left = 0.0052 └ ϵ = 0.255 ┌ Info: Starting MCMC └ total_steps = 0 ┌ Info: Starting MCMC └ total_steps = 9 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.00017 └ estimated_seconds_left = 0.0013 ┌ Info: Starting MCMC └ total_steps = 90 ┌ Info: MCMC progress │ step = 1 │ seconds_per_step = 0.0001 └ estimated_seconds_left = 0.0093 Test Summary: | Pass Total Time SampleChainsDynamicHMC.jl | 16 16 1m51.0s Testing SampleChainsDynamicHMC tests passed Testing completed after 134.34s PkgEval succeeded after 308.99s