Package evaluation of SGCRNAs on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-17T11:46:04.101 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.64s ################################################################################ # Installation # Installing SGCRNAs... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.0+0 Installed libaom_jll ────────────────── v3.11.0+0 Installed libass_jll ────────────────── v0.15.2+0 Installed ImageIO ───────────────────── v0.6.9 Installed MosaicViews ───────────────── v0.3.4 Installed HarfBuzz_jll ──────────────── v8.5.1+0 Installed MultivariateStats ─────────── v0.10.3 Installed PolygonOps ────────────────── v0.1.2 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed InlineStrings ─────────────── v1.4.4 Installed Extents ───────────────────── v0.1.6 Installed Cairo_jll ─────────────────── v1.18.5+0 Installed NearestNeighbors ──────────── v0.4.22 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed UnsafeArrays ──────────────── v1.0.8 Installed OrderedCollections ────────── v1.8.1 Installed Fontconfig_jll ────────────── v2.16.0+0 Installed SentinelArrays ────────────── v1.4.8 Installed LsqFit ────────────────────── v0.15.1 Installed Giflib_jll ────────────────── v5.2.3+0 Installed Distances ─────────────────── v0.10.12 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed QuadGK ────────────────────── v2.11.2 Installed NearestNeighborDescent ────── v0.3.7 Installed Graphics ──────────────────── v1.1.3 Installed FileIO ────────────────────── v1.17.0 Installed AdaptivePredicates ────────── v1.2.0 Installed PackageExtensionCompat ────── v1.0.2 Installed Opus_jll ──────────────────── v1.5.2+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed Ogg_jll ───────────────────── v1.3.6+0 Installed Tables ────────────────────── v1.12.1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed Arpack ────────────────────── v0.5.4 Installed EnumX ─────────────────────── v1.0.5 Installed NLSolversBase ─────────────── v7.10.0 Installed Reexport ──────────────────── v1.2.2 Installed LZO_jll ───────────────────── v2.10.3+0 Installed InverseFunctions ──────────── v0.1.17 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed TableTraits ───────────────── v1.0.1 Installed Preferences ───────────────── v1.4.3 Installed Imath_jll ─────────────────── v3.1.11+0 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed Grisu ─────────────────────── v1.0.2 Installed MappedArrays ──────────────── v0.4.2 Installed Crayons ───────────────────── v4.1.1 Installed RangeArrays ───────────────── v0.3.2 Installed Format ────────────────────── v1.3.7 Installed ADTypes ───────────────────── v1.15.0 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed ColorBrewer ───────────────── v0.4.1 Installed ParallelKMeans ────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed DiffResults ───────────────── v1.1.0 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed Packing ───────────────────── v0.5.1 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.13.0 Installed DataStructures ────────────── v0.18.22 Installed LazyModules ───────────────── v0.3.1 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed MakieCore ─────────────────── v0.9.5 Installed UnicodeFun ────────────────── v0.4.1 Installed StatsBase ─────────────────── v0.34.5 Installed x264_jll ──────────────────── v10164.0.1+0 Installed CodecZlib ─────────────────── v0.7.8 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed MathTeXEngine ─────────────── v0.6.5 Installed ArrayInterface ────────────── v7.19.0 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed DataValueInterfaces ───────── v1.0.0 Installed CEnum ─────────────────────── v0.5.0 Installed Libffi_jll ────────────────── v3.4.7+0 Installed CommonSubexpressions ──────── v0.3.1 Installed CairoMakie ────────────────── v0.13.10 Installed Clustering ────────────────── v0.15.8 Installed KrylovKit ─────────────────── v0.9.5 Installed Pixman_jll ────────────────── v0.44.2+0 Installed Expat_jll ─────────────────── v2.6.5+0 Installed libpng_jll ────────────────── v1.6.50+0 Installed isoband_jll ───────────────── v0.2.3+0 Installed IrrationalConstants ───────── v0.2.4 Installed Contour ───────────────────── v0.6.3 Installed RoundingEmulator ──────────── v0.2.1 Installed SimpleTraits ──────────────── v0.9.4 Installed ColorVectorSpace ──────────── v0.10.0 Installed ImageMetadata ─────────────── v0.9.10 Installed StableRNGs ────────────────── v1.0.3 Installed libfdk_aac_jll ────────────── v2.0.4+0 Installed Interpolations ────────────── v0.15.1 Installed libsixel_jll ──────────────── v1.10.5+0 Installed libwebp_jll ───────────────── v1.6.0+0 Installed FFMPEG_jll ────────────────── v6.1.2+0 Installed Scratch ───────────────────── v1.3.0 Installed Setfield ──────────────────── v1.1.2 Installed PooledArrays ──────────────── v1.4.3 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed ShaderAbstractions ────────── v0.5.0 Installed PDMats ────────────────────── v0.11.35 Installed WorkerUtilities ───────────── v1.6.1 Installed ImageCore ─────────────────── v0.10.5 Installed DocStringExtensions ───────── v0.9.5 Installed AxisArrays ────────────────── v0.4.7 Installed PNGFiles ──────────────────── v0.4.4 Installed JpegTurbo ─────────────────── v0.1.6 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed ForwardDiff ───────────────── v1.0.1 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed DifferentiationInterface ──── v0.7.3 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.2 Installed KernelDensity ─────────────── v0.6.10 Installed AliasTables ───────────────── v1.1.3 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed SIMD ──────────────────────── v3.7.1 Installed InvertedIndices ───────────── v1.3.1 Installed Measures ──────────────────── v0.3.2 Installed Netpbm ────────────────────── v1.1.1 Installed Colors ────────────────────── v0.12.11 Installed StaticArraysCore ──────────── v1.4.3 Installed ImageAxes ─────────────────── v0.6.12 Installed AbstractFFTs ──────────────── v1.5.0 Installed StaticArrays ──────────────── v1.9.14 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed ColorTypes ────────────────── v0.11.5 Installed QOI ───────────────────────── v1.0.1 Installed AxisAlgorithms ────────────── v1.1.0 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.84.3+0 Installed GraphPlot ─────────────────── v0.6.1 Installed BaseDirs ──────────────────── v1.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed PrettyTables ──────────────── v2.4.0 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed FreeTypeAbstraction ───────── v0.10.8 Installed Distributions ─────────────── v0.25.120 Installed CSV ───────────────────────── v0.10.15 Installed FiniteDiff ────────────────── v2.27.0 Installed Arpack_jll ────────────────── v3.5.1+1 Installed Rmath ─────────────────────── v0.8.0 Installed FilePaths ─────────────────── v0.8.3 Installed StatsFuns ─────────────────── v1.5.0 Installed Unitful ───────────────────── v1.23.1 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed OpenEXR ───────────────────── v0.3.3 Installed GridLayoutBase ────────────── v0.11.1 Installed WeakRefStrings ────────────── v1.4.2 Installed SignedDistanceFields ──────── v0.4.0 Installed JLLWrappers ───────────────── v1.7.0 Installed VectorInterface ───────────── v0.5.0 Installed ColorSchemes ──────────────── v3.30.0 Installed XZ_jll ────────────────────── v5.8.1+0 Installed x265_jll ──────────────────── v3.6.0+0 Installed GeometryBasics ────────────── v0.5.10 Installed DataFrames ────────────────── v1.7.0 Installed Pango_jll ─────────────────── v1.56.3+0 Installed ExactPredicates ───────────── v2.2.8 Installed IterTools ─────────────────── v1.10.0 Installed StatisticalTraits ─────────── v3.5.0 Installed Graphs ────────────────────── v1.13.0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed TiffImages ────────────────── v0.11.4 Installed JpegTurbo_jll ─────────────── v3.1.1+0 Installed FilePathsBase ─────────────── v0.9.24 Installed PaddedViews ───────────────── v0.5.12 Installed Compose ───────────────────── v0.9.6 Installed Adapt ─────────────────────── v4.3.0 Installed ConstructionBase ──────────── v1.6.0 Installed Libmount_jll ──────────────── v2.41.0+0 Installed HypergeometricFunctions ───── v0.3.28 Installed TriplotBase ───────────────── v0.1.0 Installed Sixel ─────────────────────── v0.1.5 Installed Compat ────────────────────── v4.17.0 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed PlotUtils ─────────────────── v1.4.3 Installed TranscodingStreams ────────── v0.11.3 Installed TensorCore ────────────────── v0.1.1 Installed EarCut_jll ────────────────── v2.2.4+0 Installed PrecompileTools ───────────── v1.3.2 Installed StatsAPI ──────────────────── v1.7.1 Installed ImageBase ─────────────────── v0.1.7 Installed Statistics ────────────────── v1.11.1 Installed StructArrays ──────────────── v0.7.1 Installed ProgressMeter ─────────────── v1.10.4 Installed WebP ──────────────────────── v0.1.3 Installed OffsetArrays ──────────────── v1.17.0 Installed UMAP ──────────────────────── v0.1.11 Installed GettextRuntime_jll ────────── v0.22.4+0 Installed Ratios ────────────────────── v0.4.5 Installed Fontconfig ────────────────── v0.4.1 Installed Animations ────────────────── v0.4.2 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed ChainRulesCore ────────────── v1.25.2 Installed LAME_jll ──────────────────── v3.100.3+0 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed libvorbis_jll ─────────────── v1.3.8+0 Installed Isoband ───────────────────── v0.1.1 Installed IntervalArithmetic ────────── v0.22.36 Installed PtrArrays ─────────────────── v1.3.0 Installed ScientificTypesBase ───────── v3.0.0 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed Showoff ───────────────────── v1.0.3 Installed SpecialFunctions ──────────── v2.5.1 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed FFTW ──────────────────────── v1.9.0 Installed IndirectArrays ────────────── v1.0.0 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed Automa ────────────────────── v1.1.0 Installed NetworkLayout ─────────────── v0.4.10 Installed MLJModelInterface ─────────── v1.11.1 Installed SGCRNAs ───────────────────── v1.0.0 Installed Makie ─────────────────────── v0.22.10 Installed DelaunayTriangulation ─────── v1.6.4 Installing 55 artifacts Installed artifact isoband 25.7 KiB Installed artifact Ogg 250.3 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact CRlibm 169.5 KiB Installed artifact Arpack 147.2 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Opus 925.5 KiB Installed artifact XZ 1.5 MiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact LZO 208.9 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Fontconfig 522.5 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact OpenEXR 1.9 MiB Installed artifact JpegTurbo 1.6 MiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Giflib 154.6 KiB Installed artifact libvorbis 271.0 KiB Installed artifact Expat 271.4 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact EarCut 80.5 KiB Installed artifact Libffi 44.2 KiB Installed artifact Pixman 372.2 KiB Installed artifact libwebp 2.6 MiB Installed artifact libpng 328.4 KiB Installed artifact Pango 1.1 MiB Installed artifact GettextRuntime 543.0 KiB Installed artifact libsixel 177.3 KiB Installed artifact Libmount 6.4 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact Graphite2 120.2 KiB Installed artifact Bzip2 503.5 KiB Installed artifact LERC 272.9 KiB Installed artifact LAME 292.5 KiB Installed artifact FreeType2 1.5 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Rmath 121.9 KiB Installed artifact Libuuid 3.5 MiB Installed artifact libaom 6.4 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact Cairo 2.2 MiB Installed artifact libass 372.4 KiB Installed artifact FFMPEG 11.0 MiB Installed artifact x265 1.4 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact oneTBB 435.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact Imath 182.8 KiB Installed artifact FriBidi 78.9 KiB Installed artifact Glib 7.7 MiB Installed artifact Libtiff 3.2 MiB Installed artifact x264 2.1 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact Xorg_libX11 13.9 MiB Updating `~/.julia/environments/v1.13/Project.toml` [4c411929] + SGCRNAs v1.0.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [18cc8868] + BaseDirs v1.3.1 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.13.10 [d360d2e6] + ChainRulesCore v1.25.2 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.30.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.17.0 [a81c6b42] + Compose v0.9.6 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.4 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.9.0 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [186bb1d3] + Fontconfig v0.4.1 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.0.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [5c1252a2] + GeometryBasics v0.5.10 [a2cc645c] + GraphPlot v0.6.1 [a2bd30eb] + Graphics v1.1.3 [86223c79] + Graphs v1.13.0 [3955a311] + GridLayoutBase v0.11.1 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.4 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.36 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [2fda8390] + LsqFit v0.15.1 [e80e1ace] + MLJModelInterface v1.11.1 [1914dd2f] + MacroTools v0.5.16 ⌅ [ee78f7c6] + Makie v0.22.10 ⌅ [20f20a25] + MakieCore v0.9.5 [dbb5928d] + MappedArrays v0.4.2 [0a4f8689] + MathTeXEngine v0.6.5 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [6f286f6a] + MultivariateStats v0.10.3 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [dd2c4c9e] + NearestNeighborDescent v0.3.7 [b8a86587] + NearestNeighbors v0.4.22 [f09324ee] + Netpbm v1.1.1 [46757867] + NetworkLayout v0.4.10 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.4 [65ce6f38] + PackageExtensionCompat v1.0.2 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [42b8e9d4] + ParallelKMeans v1.1.0 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [4c411929] + SGCRNAs v1.0.0 [fdea26ae] + SIMD v3.7.1 [30f210dd] + ScientificTypesBase v3.0.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.0 [699a6c99] + SimpleTraits v0.9.4 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [860ef19b] + StableRNGs v1.0.3 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.4 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [c4f8c510] + UMAP v0.1.11 [1cfade01] + UnicodeFun 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libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.50+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [1270edf5] + x264_jll v10164.0.1+0 ⌅ [dfaa095f] + x265_jll v3.6.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 29.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4488.7 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 26 already precompiled. Precompiling package dependencies... Precompilation completed after 1726.52s ################################################################################ # Testing # Testing SGCRNAs Status `/tmp/jl_vU4Juw/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [13f3f980] CairoMakie v0.13.10 [aaaa29a8] Clustering v0.15.8 ⌅ [5ae59095] Colors v0.12.11 [a81c6b42] Compose v0.9.6 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 [186bb1d3] Fontconfig v0.4.1 [a2cc645c] GraphPlot v0.6.1 [86223c79] Graphs v1.13.0 [5ab0869b] KernelDensity v0.6.10 [0b1a1467] KrylovKit v0.9.5 [6f286f6a] MultivariateStats v0.10.3 [46757867] NetworkLayout v0.4.10 [42b8e9d4] ParallelKMeans v1.1.0 [4c411929] SGCRNAs v1.0.0 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [c4f8c510] UMAP v0.1.11 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_vU4Juw/Manifest.toml` [47edcb42] ADTypes v1.15.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.19.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [18cc8868] BaseDirs v1.3.1 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.13.10 [d360d2e6] ChainRulesCore v1.25.2 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.30.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.17.0 [a81c6b42] Compose v0.9.6 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.3 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [186bb1d3] Fontconfig v0.4.1 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.0.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [5c1252a2] GeometryBasics v0.5.10 [a2cc645c] GraphPlot v0.6.1 [a2bd30eb] Graphics v1.1.3 [86223c79] Graphs v1.13.0 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.4 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [2fda8390] LsqFit v0.15.1 [e80e1ace] MLJModelInterface v1.11.1 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.22.10 ⌅ [20f20a25] MakieCore v0.9.5 [dbb5928d] MappedArrays v0.4.2 [0a4f8689] MathTeXEngine v0.6.5 [442fdcdd] Measures v0.3.2 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [6f286f6a] MultivariateStats v0.10.3 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [dd2c4c9e] NearestNeighborDescent v0.3.7 [b8a86587] NearestNeighbors v0.4.22 [f09324ee] Netpbm v1.1.1 [46757867] NetworkLayout v0.4.10 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [42b8e9d4] ParallelKMeans v1.1.0 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [647866c9] PolygonOps v0.1.2 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [5eaf0fd0] RoundingEmulator v0.2.1 [4c411929] SGCRNAs v1.0.0 [fdea26ae] SIMD v3.7.1 [30f210dd] ScientificTypesBase v3.0.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [65257c39] ShaderAbstractions v0.5.0 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.0 [699a6c99] SimpleTraits v0.9.4 [45858cf5] Sixel v0.1.5 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [860ef19b] StableRNGs v1.0.3 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [64bff920] StatisticalTraits v3.5.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.4 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [c4f8c510] UMAP v0.1.11 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.23.1 [c4a57d5a] UnsafeArrays v1.0.8 [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.2 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.0.0 [76eceee3] WorkerUtilities v1.6.1 ⌅ [68821587] Arpack_jll v3.5.1+1 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 ⌅ [b22a6f82] FFMPEG_jll v6.1.2+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.84.3+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [905a6f67] Imath_jll v3.1.11+0 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [856f044c] MKL_jll v2025.0.1+1 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.2.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.5.2+0 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [9a68df92] isoband_jll v0.2.3+0 [a4ae2306] libaom_jll v3.11.0+0 ⌅ [0ac62f75] libass_jll v0.15.2+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.50+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [1270edf5] x264_jll v10164.0.1+0 ⌅ [dfaa095f] x265_jll v3.6.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Method definition PNG(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PNG), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PDF(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PDF), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition PS(Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition kwcall(NamedTuple{names, T} where T<:Tuple where names, typeof(Compose.PS), Any...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/Compose.jl:138 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/cairo_backends.jl:208. WARNING: Method definition max_text_extents(AbstractString, Measures.Measure, AbstractString...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/fontfallback.jl:83 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/pango.jl:119. WARNING: Method definition text_extents(AbstractString, Measures.Measure, AbstractString...) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/fontfallback.jl:114 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/pango.jl:131. WARNING: Method definition pango_to_svg(AbstractString) in module Compose at /home/pkgeval/.julia/packages/Compose/eWKZh/src/fontfallback.jl:147 overwritten at /home/pkgeval/.julia/packages/Compose/eWKZh/src/pango.jl:319. Test Summary: | Pass Total Time Function tests | 5 5 8m13.5s Testing SGCRNAs tests passed Testing completed after 612.18s PkgEval succeeded after 2408.81s