Package evaluation of PiecewiseDeterministicMarkovProcesses on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-17T05:23:08.716 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.49s ################################################################################ # Installation # Installing PiecewiseDeterministicMarkovProcesses... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.10 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.177.2 [459566f4] + DiffEqCallbacks v4.8.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [ccbc3e58] + JumpProcesses v9.16.1 [7f56f5a3] + LSODA v0.7.5 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [86206cdf] + PiecewiseDeterministicMarkovProcesses v0.0.10 [e409e4f3] + PoissonRandom v0.4.5 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.29 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.34.1 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.103.1 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.4 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [c3572dad] + Sundials v4.28.0 [2efcf032] + SymbolicIndexingInterface v0.3.41 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [781d530d] + TruncatedStacktraces v1.4.0 [3a884ed6] + UnPack v1.0.2 [aae0fff6] + LSODA_jll v0.1.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] + Sundials_jll v5.2.3+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.56s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 233.18s ################################################################################ # Testing # Testing PiecewiseDeterministicMarkovProcesses Status `/tmp/jl_Ad1Wdh/Project.toml` [f6369f11] ForwardDiff v1.0.1 [ccbc3e58] JumpProcesses v9.16.1 [7f56f5a3] LSODA v0.7.5 [1dea7af3] OrdinaryDiffEq v6.99.0 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.10 [d236fae5] PreallocationTools v0.4.29 [731186ca] RecursiveArrayTools v3.34.1 [0bca4576] SciMLBase v2.103.1 [c3572dad] Sundials v4.28.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Ad1Wdh/Manifest.toml` [47edcb42] ADTypes v1.15.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] BracketingNonlinearSolve v1.3.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.2 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.17.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.177.2 [459566f4] DiffEqCallbacks v4.8.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.3 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.12 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [a4df4552] FastPower v1.1.3 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.5 [86223c79] Graphs v1.13.0 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [ae98c720] Jieko v0.2.1 [ccbc3e58] JumpProcesses v9.16.1 [ba0b0d4f] Krylov v0.10.1 [7f56f5a3] LSODA v0.7.5 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [5078a376] LazyArrays v2.6.1 [87fe0de2] LineSearch v0.1.4 [d3d80556] LineSearches v7.4.0 [7ed4a6bd] LinearSolve v3.19.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.10.0 [be0214bd] NonlinearSolveBase v1.12.0 [5959db7a] NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.6.0 [26075421] NonlinearSolveSpectralMethods v1.2.0 [bac558e1] OrderedCollections v1.8.1 [1dea7af3] OrdinaryDiffEq v6.99.0 [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.2.0 [6ad6398a] OrdinaryDiffEqBDF v1.6.0 [bbf590c4] OrdinaryDiffEqCore v1.26.2 [50262376] OrdinaryDiffEqDefault v1.5.0 [4302a76b] OrdinaryDiffEqDifferentiation v1.10.0 [9286f039] OrdinaryDiffEqExplicitRK v1.1.0 [e0540318] OrdinaryDiffEqExponentialRK v1.4.0 [becaefa8] OrdinaryDiffEqExtrapolation v1.5.0 [5960d6e9] OrdinaryDiffEqFIRK v1.12.0 [101fe9f7] OrdinaryDiffEqFeagin v1.1.0 [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1 [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0 [9f002381] OrdinaryDiffEqIMEXMultistep v1.3.0 [521117fe] OrdinaryDiffEqLinear v1.3.0 [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0 [b0944070] OrdinaryDiffEqLowStorageRK v1.3.0 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.10.0 [c9986a66] OrdinaryDiffEqNordsieck v1.1.0 [5dd0a6cf] OrdinaryDiffEqPDIRK v1.3.1 [5b33eab2] OrdinaryDiffEqPRK v1.1.0 [04162be5] OrdinaryDiffEqQPRK v1.1.0 [af6ede74] OrdinaryDiffEqRKN v1.1.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.11.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [669c94d9] OrdinaryDiffEqSSPRK v1.3.0 [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.3.0 [358294b1] OrdinaryDiffEqStabilizedRK v1.1.2 [fa646aed] OrdinaryDiffEqSymplecticRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [79d7bb75] OrdinaryDiffEqVerner v1.2.0 [d96e819e] Parameters v0.12.3 [86206cdf] PiecewiseDeterministicMarkovProcesses v0.0.10 [e409e4f3] PoissonRandom v0.4.5 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [d236fae5] PreallocationTools v0.4.29 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.34.1 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [0bca4576] SciMLBase v2.103.1 [19f34311] SciMLJacobianOperators v0.1.6 [c0aeaf25] SciMLOperators v1.3.1 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [727e6d20] SimpleNonlinearSolve v2.5.0 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [0a514795] SparseMatrixColorings v0.4.21 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.14 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [c3572dad] Sundials v4.28.0 [2efcf032] SymbolicIndexingInterface v0.3.41 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [8290d209] ThreadingUtilities v0.5.5 [a759f4b9] TimerOutputs v0.5.29 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0 [aae0fff6] LSODA_jll v0.1.2+0 [856f044c] MKL_jll v2025.0.1+1 [efe28fd5] OpenSpecFun_jll v0.5.6+0 ⌅ [fb77eaff] Sundials_jll v5.2.3+0 [1317d2d5] oneTBB_jll v2022.0.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.14.1+1 [e37daf67] LibGit2_jll v1.9.1+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.1+0 [efcefdf7] PCRE2_jll v10.45.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.13.1+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 4181.7 ms ✓ FastGaussQuadrature 5385.2 ms ✓ LineSearches 6263.7 ms ✓ OrdinaryDiffEqExplicitRK 8625.5 ms ✓ OrdinaryDiffEqLowOrderRK 51789.9 ms ✓ OrdinaryDiffEqVerner 6379.6 ms ✓ OrdinaryDiffEqRKN 5986.8 ms ✓ OrdinaryDiffEqPRK 6019.5 ms ✓ OrdinaryDiffEqQPRK 8226.0 ms ✓ OrdinaryDiffEqStabilizedRK 6764.6 ms ✓ OrdinaryDiffEqHighOrderRK 6072.1 ms ✓ OrdinaryDiffEqFeagin 6978.0 ms ✓ OrdinaryDiffEqSymplecticRK 8285.5 ms ✓ OrdinaryDiffEqLowStorageRK 5486.2 ms ✓ OrdinaryDiffEqNordsieck 20939.9 ms ✓ OrdinaryDiffEqLinear 5395.5 ms ✓ OrdinaryDiffEqFunctionMap 7957.5 ms ✓ OrdinaryDiffEqSSPRK 13298.3 ms ✓ OrdinaryDiffEqDifferentiation 3879.6 ms ✓ LineSearch → LineSearchLineSearchesExt 6685.5 ms ✓ OrdinaryDiffEqAdamsBashforthMoulton 13689.8 ms ✓ OrdinaryDiffEqExtrapolation 35916.0 ms ✓ OrdinaryDiffEqRosenbrock 15302.2 ms ✓ OrdinaryDiffEqNonlinearSolve 15731.1 ms ✓ OrdinaryDiffEqSDIRK 15911.1 ms ✓ OrdinaryDiffEqStabilizedIRK 12396.2 ms ✓ OrdinaryDiffEqIMEXMultistep 13866.8 ms ✓ OrdinaryDiffEqPDIRK 42378.5 ms ✓ OrdinaryDiffEqFIRK 26880.3 ms ✓ OrdinaryDiffEqExponentialRK 28060.8 ms ✓ OrdinaryDiffEqBDF 59155.5 ms ✓ OrdinaryDiffEqDefault 31270.5 ms ✓ OrdinaryDiffEq 32 dependencies successfully precompiled in 507 seconds. 211 already precompiled. 0.088726 seconds (15.62 k allocations: 879.219 KiB, 20.40% gc time, 99.94% compilation time) Comparison of solvers ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:158 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/zs1s7/src/misc_utils.jl:158 7.376944 seconds (4.68 M allocations: 263.450 MiB, 1.62% gc time, 99.79% compilation time: <1% of which was recompilation) --> norm difference = 0.00020895427984513049 - solver = cvode 4.528980 seconds (1.76 M allocations: 96.796 MiB, 2.27% gc time, 99.96% compilation time: <1% of which was recompilation) --> norm difference = 4.562246893158317e-6 - solver = lsoda 2.611325 seconds (2.08 M allocations: 117.005 MiB, 1.61% gc time, 99.83% compilation time: <1% of which was recompilation) --> norm difference = 0.00020895427882905437 - solver = CVODEBDF 2.303819 seconds (1.49 M allocations: 84.655 MiB, 99.80% compilation time: <1% of which was recompilation) --> norm difference = 9.164040960740749e-6 - solver = CVODEAdams 15.848727 seconds (5.97 M allocations: 337.013 MiB, 4.79% gc time, 99.92% compilation time) --> norm difference = 0.00021445406171594072 - solver = RS23 5.147167 seconds (4.99 M allocations: 279.778 MiB, 1.95% gc time, 99.93% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = tsit5 8.855689 seconds (3.05 M allocations: 173.723 MiB, 0.66% gc time, 99.89% compilation time) --> norm difference = 1.5885276383187374e-7 - solver = rodas4P-AutoDiff 8.138027 seconds (2.92 M allocations: 166.103 MiB, 0.83% gc time, 99.89% compilation time) --> norm difference = 3.1827500635017714e-8 - solver = rodas5 6.329784 seconds (4.93 M allocations: 276.480 MiB, 2.19% gc time, 99.94% compilation time) --> norm difference = 1.4133114234482491e-8 - solver = AutoTsit5RS23 0.066444 seconds (14.92 k allocations: 848.688 KiB, 98.22% compilation time) Test Summary: | Pass Total Time Example TCP | 1 1 1m07.6s WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:5. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:74 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:75 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice(ad_alg::Bool, ::Val{0}, ::Val{:forward}) at misc_utils.jl:158 └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/zs1s7/src/misc_utils.jl:158 --> norm difference = 9.985930109479568e-7 - solver = lsoda --> norm difference = 1.2362318864367339e-5 - solver = cvode --> norm difference = 1.2362287630685032e-5 - solver = CVODEBDF --> norm difference = 1.534517703571936e-6 - solver = CVODEAdams --> norm difference = 3.4168918805477233e-9 - solver = tsit5 --> norm difference = 1.6708951999788724e-8 - solver = rodas4P-AutoDiff --> norm difference = 0.0065577534809497795 - solver = rodas5 --> norm difference = 2.2784790345120598e-5 - solver = RS23 --> norm difference = 4.120051351197418e-7 - solver = AutoTsit5-RS23 Test Summary: | Pass Total Time Example explosion of jump times | 1 1 32.1s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:29 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:71. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:33 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:79. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:81. Comparison of solvers - CHV ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:121 --> norm difference = 0.0023436667727310123 - solver = cvode ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 --> norm difference = 0.0021281768231347087 - solver = lsoda --> norm difference = 0.0023436725223291432 - solver = CVODEBDF --> norm difference = 0.002069344401206763 - solver = CVODEAdams --> norm difference = 0.0003403548339520057 - solver = tsit5 --> norm difference = 5.704655495719635e-5 - solver = rodas4P-noAutoDiff --> norm difference = 1.0002506769524189e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.0003403548339520057 - solver = AutoTsit5-RS23 Comparison of solvers - CHV (without saving solution) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 Comparison of solvers - CHV (limited by simulation time) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F!), VariableRate{typeof(R!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = macro expansion at Test.jl:738 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:738 0.001469 seconds (4.52 k allocations: 179.016 KiB) 0.001436 seconds (4.47 k allocations: 176.312 KiB) ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:529 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:529 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:529 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:529 ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = top-level scope at pdmpStiff.jl:529 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:529 ┌ Warning: `Base.getindex(VA::AbstractVectorOfArray{T, N, A}, I::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[I]` instead. │ caller = top-level scope at pdmpStiff.jl:529 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:529 Comparison of solvers - rejection ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:176 --> norm difference = 0.001893487349736045 - solver = cvode --> norm difference = 0.001893487349736045 - solver = lsoda --> norm difference = 0.001893487349736045 - solver = CVODEBDF --> norm difference = 0.001893487349736045 - solver = CVODEAdams --> norm difference = 0.001893487349736045 - solver = tsit5 --> norm difference = 0.001893487349736045 - solver = rodas4P-noAutoDiff --> norm difference = 0.001893487349736045 - solver = rodas4P-AutoDiff --> norm difference = 0.001893487349736045 - solver = AutoTsit5-RS23 Alternate between calls CHV - Rej --> norm diff (CHV) = 0.00014644591919932282 --> norm diff (Rej) = 0.001893487349736045 Comparison of solvers, with function Delta ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:212 --> norm difference = 0.005069408256076713 - solver = cvode --> norm difference = 0.0072302110738746705 - solver = lsoda --> norm difference = 0.005070017916750658 - solver = CVODEBDF --> norm difference = 0.010638187483436923 - solver = CVODEAdams --> norm difference = 0.011875623333708063 - solver = tsit5 --> norm difference = 7.266276497830404e-5 - solver = rodas4P-noAutoDiff --> norm difference = 8.647983008813753e-5 - solver = rodas4P-AutoDiff --> norm difference = 0.011875623333708063 - solver = AutoTsit5-RS23 --> allocations = (8816, 9616, 10416) Test Summary: | Pass Total Time Example with stiff ODE part | 74 74 1m45.7s Test Summary: | Total Time Controlling allocations | 0 0.0s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:71 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:79 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/pdmpStiff.jl:81 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:15. Test Summary: | Pass Total Time Test Rate structures 1/2 | 10 10 8.6s WARNING: Method definition F!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesComposite.jl:5. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesComposite.jl:13. WARNING: Method definition R!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesCst.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesComposite.jl:15. --> Allocations with Composite struct 0.000279 seconds (186 allocations: 8.750 KiB) 0.000398 seconds (205 allocations: 8.969 KiB) 0.000522 seconds (225 allocations: 9.281 KiB) --> Allocations with Composite struct made of VariableRates 0.052705 seconds (13.99 k allocations: 801.203 KiB, 99.20% compilation time) 0.000394 seconds (205 allocations: 8.875 KiB) 0.000485 seconds (225 allocations: 9.188 KiB) Test Summary: | Pass Total Time Test Rate structures 2/2 | 9 9 12.1s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp.jl:25 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:4. WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/test/testRatesComposite.jl:13 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp.jl:37 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:17. 0.669105 seconds (252.46 k allocations: 14.064 MiB, 99.14% compilation time: 87% of which was recompilation) 1.170207 seconds (572.19 k allocations: 27.016 MiB, 96.84% compilation time: 4% of which was recompilation) 0.010739 seconds (153.59 k allocations: 6.005 MiB) 8.244519 seconds (2.81 M allocations: 160.275 MiB, 1.10% gc time, 99.67% compilation time) Test Summary: | Total Time Example with 2d example, for autodiff | 0 10.7s WARNING: Method definition F_tcp!(Any, Any, Any, Any, Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:4 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:5. WARNING: Method definition rate_tcp(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp.jl:35 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:15. WARNING: Method definition R_tcp!(Any, Any, Any, Any, Any, Bool) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:17 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:17. WARNING: Method definition AnalyticalSample(Any, Any, Any, Int64) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmpExplosion.jl:5 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:27. Comparison of solvers ┌ Warning: Assignment to `problem` in soft scope is ambiguous because a global variable by the same name exists: `problem` will be treated as a new local. Disambiguate by using `local problem` to suppress this warning or `global problem` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:90 ┌ Warning: Assignment to `res` in soft scope is ambiguous because a global variable by the same name exists: `res` will be treated as a new local. Disambiguate by using `local res` to suppress this warning or `global res` to assign to the existing global variable. └ @ ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp_rejection.jl:91 ┌ Warning: Using a `Bool` for keyword argument `autodiff` is deprecated. Please use an `ADType` specifier. │ caller = _process_AD_choice at misc_utils.jl:158 [inlined] └ @ Core ~/.julia/packages/OrdinaryDiffEqCore/zs1s7/src/misc_utils.jl:158 --> norm difference = 0.0 - solver = cvode --> norm difference = 0.0 - solver = lsoda --> norm difference = 0.0 - solver = CVODEBDF --> norm difference = 0.0 - solver = CVODEAdams --> norm difference = 0.0 - solver = tsit5 --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = rodas4P-AutoDiff --> norm difference = 0.0 - solver = RS23 --> norm difference = 0.0 - solver = AutoTsit5RS23 test for allocations, should not depend on 0.001023 seconds (232 allocations: 8.984 KiB) 0.001739 seconds (311 allocations: 10.219 KiB) 0.002301 seconds (384 allocations: 11.359 KiB) test for multiple calls, the result should not depend on Test Summary: | Pass Total Time Rejection method | 1 1 24.8s Test Summary: | Pass Total Time Test number of fictitious jumps | 2 2 0.0s WARNING: Method definition R(Any) in module Main at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/tcp2d.jl:15 overwritten at /home/pkgeval/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/examples/pdmp_example_eva.jl:11. --> Case simple chv: 4.640580 seconds (4.15 M allocations: 235.347 MiB, 1.20% gc time, 99.84% compilation time) --> For simulations rejection (Tsit5): 0.646673 seconds (281.16 k allocations: 13.622 MiB, 99.36% compilation time) --> Simulation using save_at to see sampling behaviour 0.051913 seconds (14.98 k allocations: 859.086 KiB, 98.72% compilation time) Test Summary: | Pass Total Time Neuron model | 2 2 6.0s ┌ Warning: Linear indexing of `AbstractVectorOfArray` is deprecated. Change `A[i]` to `A.u[i]` │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 ┌ Warning: `Base.getindex(VA::AbstractDiffEqArray{T, N, A}, i::Int) where {T, N, A <: Union{AbstractArray, AbstractVectorOfArray}}` is deprecated, use `VA.u[i]` instead. │ caller = solve(problem::PDMPProblem{Float64, Int64, Vector{Float64}, Vector{Int64}, PiecewiseDeterministicMarkovProcesses.PDMPCaracteristics{typeof(F_sir!), VariableRate{typeof(R_sir!)}, PiecewiseDeterministicMarkovProcesses.Jump{Int64, Matrix{Int64}, typeof(PiecewiseDeterministicMarkovProcesses.Delta_dummy)}, Vector{Float64}, Vector{Int64}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}}, TaskLocalRNG}, algo::CHV{Symbol}; verbose::Bool, ind_save_d::UnitRange{Int64}, ind_save_c::UnitRange{Int64}, n_jumps::Int64, reltol::Float64, abstol::Float64, save_positions::Tuple{Bool, Bool}, save_rate::Bool, finalizer::typeof(PiecewiseDeterministicMarkovProcesses.finalize_dummy), kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at chv.jl:131 └ @ Core ~/.julia/packages/PiecewiseDeterministicMarkovProcesses/WPz0W/src/chv.jl:131 Test Summary: | Pass Total Time Example SIR | 3 3 8.7s --> rejection algorithm for SSA Test Summary: | Pass Total Time Example SIR(rejection) | 3 3 4.9s Test Summary: | Pass Total Time Neural network | 2 2 3.3s Test Summary: | Total Time JumpProcesses Wrap | 0 0.0s Testing PiecewiseDeterministicMarkovProcesses tests passed Testing completed after 819.6s PkgEval succeeded after 1096.55s