Package evaluation of MolecularTrajectories on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-16T23:16:10.627 ################################################################################ # Set-up # Set-up completed after 0.27s ################################################################################ # Installation # Installing MolecularTrajectories... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [c3751834] + MolecularTrajectories v2.1.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [aea3f91d] + MolecularBoxes v1.0.1 [c3751834] + MolecularTrajectories v2.1.0 ⌅ [90137ffa] + StaticArrays v0.12.6 [10745b16] + Statistics v1.11.1 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [8dfed614] + Test v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.13.1+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.4s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... ✗ MolecularTrajectories 0 dependencies successfully precompiled in 5 seconds. 11 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: MolecularTrajectories Failed to precompile MolecularTrajectories [c3751834-3f3f-50ce-917e-73bb091d662c] to "/home/pkgeval/.julia/compiled/v1.13/MolecularTrajectories/jl_qfyVNs" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Printf` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:62 [2] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [3] top-level scope @ ~/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [5] top-level scope @ ~/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:29 [6] include(mod::Module, _path::String) @ Base ./Base.jl:309 [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [8] top-level scope @ stdin:5 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [11] include_string @ ./loading.jl:2858 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [13] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:2 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 17.14s ################################################################################ # Loading # Loading MolecularTrajectories... Precompiling packages... Info Given MolecularTrajectories was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `Printf` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace:  [1] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:62  [2] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [3] top-level scope  @ ~/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5  [4] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [5] top-level scope  @ ~/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:29  [6] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3002  [8] top-level scope  @ stdin:5  [9] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2848  [11] include_string  @ ./loading.jl:2858 [inlined]  [12] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:318  [13] _start()  @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:2 in expression starting at stdin:5 ✗ MolecularTrajectories 0 dependencies successfully precompiled in 5 seconds. 11 already precompiled. ERROR: The following 1 direct dependency failed to precompile: MolecularTrajectories Failed to precompile MolecularTrajectories [c3751834-3f3f-50ce-917e-73bb091d662c] to "/home/pkgeval/.julia/compiled/v1.13/MolecularTrajectories/jl_r2lHI6" (ProcessExited(1)). ERROR: LoadError: UndefVarError: `Printf` not defined in `Base` Suggestion: check for spelling errors or missing imports. Stacktrace: [1] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:62 [2] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [3] top-level scope @ ~/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5 [4] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [5] top-level scope @ ~/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:29 [6] include(mod::Module, _path::String) @ Base ./Base.jl:309 [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3002 [8] top-level scope @ stdin:5 [9] eval(m::Module, e::Any) @ Core ./boot.jl:489 [10] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2848 [11] include_string @ ./loading.jl:2858 [inlined] [12] exec_options(opts::Base.JLOptions) @ Base ./client.jl:318 [13] _start() @ Base ./client.jl:553 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/Gromacs.jl:5 in expression starting at /home/pkgeval/.julia/packages/MolecularTrajectories/7h18N/src/MolecularTrajectories.jl:2 in expression starting at stdin: Loading failed after 8.15s ERROR: LoadError: failed process: Process(`/opt/julia/bin/julia -C native -J/opt/julia/lib/julia/sys.so -g1 --check-bounds=yes --inline=yes --pkgimages=existing -e 'using MolecularTrajectories'`, ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:193 [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] exec_options(opts::Base.JLOptions) @ Base ./client.jl:320 [7] _start() @ Base ./client.jl:553 in expression starting at /PkgEval.jl/scripts/evaluate.jl:184 PkgEval failed after 46.19s: package fails to precompile