Package evaluation of ClimateTools on Julia 1.13.0-DEV.853 (3e868b27cf*) started at 2025-07-17T07:48:20.169 ################################################################################ # Set-up # Set-up completed after 0.2s ################################################################################ # Installation # Installing ClimateTools... Resolving package versions... Installed NetCDF ─────── v0.10.3 Installed Conda ──────── v1.10.2 Installed NCDatasets ─── v0.10.4 Installed PyCall ─────── v1.96.4 Installed HDF5 ───────── v0.16.16 Installed ClimateTools ─ v0.24.1 Updating `~/.julia/environments/v1.13/Project.toml` [4f4ee721] + ClimateTools v0.24.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [621f4979] + AbstractFFTs v1.5.0 [22286c92] + AccurateArithmetic v0.3.8 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.7 [9e28174c] + BinDeps v1.0.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 ⌅ [179af706] + CFTime v0.1.4 [2a0fbf3d] + CPUSummary v0.2.6 [336ed68f] + CSV v0.10.15 [324d7699] + CategoricalArrays v0.10.8 [d360d2e6] + ChainRulesCore v1.25.2 [4f4ee721] + ClimateTools v0.24.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [944b1d66] + CodecZlib v0.7.8 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.17.0 [a81c6b42] + Compose v0.9.6 [8f4d0f93] + Conda v1.10.2 [a9693cdc] + CondaBinDeps v0.2.0 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [7ad07ef1] + CoupledFields v0.3.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [75c7ada1] + DBFTables v1.2.7 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.3 ⌅ [3c3547ce] + DiskArrays v0.2.13 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [411431e0] + Extents v0.1.6 ⌅ [fe3fe864] + Extremes v0.3.0 [7a1cc6ca] + FFTW v1.9.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [59287772] + Formatting v0.4.3 ⌅ [f6369f11] + ForwardDiff v0.10.38 [c91e804a] + Gadfly v1.4.1 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.5.0 [0329782f] + GeoInterfaceRecipes v1.0.2 [86223c79] + Graphs v1.13.0 [42e2da0e] + Grisu v1.0.2 ⌅ [f67ccb44] + HDF5 v0.16.16 [a1b4810d] + Hexagons v0.2.0 [3e5b6fbb] + HostCPUFeatures v0.1.17 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.4 ⌅ [a98d9a8b] + Interpolations v0.14.0 [8197267c] + IntervalSets v0.7.11 [d8418881] + Intervals v1.10.0 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [8e2b3108] + KahanSummation v0.3.1 [5ab0869b] + KernelDensity v0.6.10 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 ⌅ [7031d0ef] + LazyGrids v0.5.0 [d3d80556] + LineSearches v7.4.0 [4345ca2d] + Loess v0.6.4 [2ab3a3ac] + LogExpFunctions v0.3.29 [bdcacae8] + LoopVectorization v0.12.172 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [ee262687] + MambaLite v0.1.3 [d125e4d3] + ManualMemory v0.1.8 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [78c3b35d] + Mocking v0.8.1 ⌅ [85f8d34a] + NCDatasets v0.10.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 ⌅ [30363a11] + NetCDF v0.10.3 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [1d0040c9] + PolyesterWeave v0.2.2 ⌅ [f27b6e38] + Polynomials v1.2.1 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [438e738f] + PyCall v1.96.4 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 ⌅ [b0e4dd01] + RollingFunctions v0.7.0 [94e857df] + SIMDTypes v0.1.0 [476501e8] + SLEEFPirates v0.6.43 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 ⌅ [8e980c4a] + Shapefile v0.10.0 [992d4aef] + Showoff v1.0.3 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.14 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [892a3eda] + StringManipulation v0.4.1 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [8290d209] + ThreadingUtilities v0.5.5 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 [30578b45] + URIParser v0.4.1 [3a884ed6] + UnPack v1.0.2 [3d5dd08c] + VectorizationBase v0.21.71 [81def892] + VersionParsing v1.3.0 [ea10d353] + WeakRefStrings v1.4.2 ⌅ [efce3f68] + WoodburyMatrices v0.5.6 [76eceee3] + WorkerUtilities v1.6.1 [f5851436] + FFTW_jll v3.3.11+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [477f73a3] + libaec_jll v1.1.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.14.1+1 [e37daf67] + LibGit2_jll v1.9.1+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.1+0 [efcefdf7] + PCRE2_jll v10.45.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.13.1+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building Conda ───────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/b19db3927f0db4151cb86d073689f2428e524576/build.log` Building PyCall ──────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Building NCDatasets ──→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/31ce6711bc8fa173d97c59066e78caa2846ed200/build.log` Building NetCDF ──────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/dda7b49694d15d7d1a1ba1d7c2a9142777028bd5/build.log` Building HDF5 ────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Building ClimateTools → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/216f2d00acfd5b5775f42f87afc4937408830abd/build.log` Installation completed after 348.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... No packages added to or removed from `~/.julia/environments/pkgeval/Project.toml` No packages added to or removed from `~/.julia/environments/pkgeval/Manifest.toml` Precompiling package dependencies... Precompiling packages... 42899.0 ms ? GeoInterfaceRecipes 29765.0 ms ✓ KernelDensity 4228.1 ms ? Shapefile 77445.4 ms ✓ Gadfly 156285.3 ms ✓ Extremes 7279.3 ms ? ClimateTools 3 dependencies successfully precompiled in 324 seconds. 255 already precompiled. 3 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ Gadfly │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. │ WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. │ WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. │ WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. └ ┌ GeoInterfaceRecipes │ WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ Shapefile │ WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ ClimateTools │ WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 333.55s ################################################################################ # Loading # Loading ClimateTools... Precompiling packages... 2146.0 ms ? GeoInterfaceRecipes 4015.9 ms ? Shapefile Info Given ClimateTools was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 8312.7 ms ? ClimateTools WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 1504.7 ms ? GeoInterfaceRecipes Info Given Shapefile was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 3740.0 ms ? Shapefile WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... Info Given GeoInterfaceRecipes was explicitly requested, output will be shown live  WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 1510.5 ms ? GeoInterfaceRecipes WARNING: Method definition apply_recipe(Base.AbstractDict{Symbol, Any}, Union{GeoInterface.MultiPointTrait, GeoInterface.PointTrait}, Any) in module GeoInterfaceRecipesBaseExt at /home/pkgeval/.julia/packages/RecipesBase/BRe07/src/RecipesBase.jl:296 overwritten in module GeoInterfaceRecipes on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 2648.8 ms ✓ DBFTables 1 dependency successfully precompiled in 3 seconds. 17 already precompiled. Precompiling packages... 89319.0 ms ✓ DataFrames 1 dependency successfully precompiled in 90 seconds. 34 already precompiled. Precompiling packages... 8944.7 ms ✓ TimeZones → TimeZonesRecipesBaseExt 14619.7 ms ✓ Intervals Info Given Polynomials was explicitly requested, output will be shown live  WARNING: method definition for showterm at /home/pkgeval/.julia/packages/Polynomials/1aa8e/src/polynomials/ChebyshevT.jl:224 declares type variable N but does not use it. 9606.1 ms ✓ Polynomials 3 dependencies successfully precompiled in 33 seconds. 29 already precompiled. 1 dependency had output during precompilation: ┌ Polynomials │ [Output was shown above] └ Precompiling packages... 7975.7 ms ✓ CoupledFields 10161.0 ms ✓ Graphs 1964.8 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 7731.2 ms ✓ Compose 30373.6 ms ✓ CSV 12284.8 ms ✓ Distributions 27376.1 ms ✓ Optim 4471.1 ms ✓ MambaLite 5516.9 ms ✓ Distributions → DistributionsTestExt 5643.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 31987.9 ms ✓ KernelDensity 28749.7 ms ✓ Gadfly 52240.1 ms ✓ Extremes 13 dependencies successfully precompiled in 232 seconds. 178 already precompiled. Precompiling packages... 5671.0 ms ✓ Conda 25282.4 ms ✓ PyCall 2 dependencies successfully precompiled in 31 seconds. 23 already precompiled. Precompiling packages... 5893.0 ms ✓ AccurateArithmetic 17142.0 ms ✓ RollingFunctions 2 dependencies successfully precompiled in 24 seconds. 58 already precompiled. Precompiling packages... 6973.1 ms ✓ LoopVectorization → ForwardDiffExt 1 dependency successfully precompiled in 7 seconds. 57 already precompiled. [ Info: Installing scipy.interpolate via the Conda scipy package... [ Info: Running `conda install -q -y scipy` in root environment Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /home/pkgeval/.julia/conda/3/x86_64 added / updated specs: - scipy The following packages will be downloaded: package | build ---------------------------|----------------- scipy-1.16.0 | py312hf734454_0 16.1 MB conda-forge ------------------------------------------------------------ Total: 16.1 MB The following NEW packages will be INSTALLED: scipy conda-forge/linux-64::scipy-1.16.0-py312hf734454_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Loading completed after 531.81s PkgEval succeeded after 1240.56s