Package evaluation of NeutralLandscapes on Julia 1.12.0-DEV.2126 (3761029c84*) started at 2025-03-25T13:16:20.991 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.61s ################################################################################ # Installation # Installing NeutralLandscapes... Resolving package versions... Updating `~/.julia/environments/v1.12/Project.toml` [71847384] + NeutralLandscapes v0.1.5 Updating `~/.julia/environments/v1.12/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.118 [ffbed154] + DocStringExtensions v0.9.3 [1a297f60] + FillArrays v1.13.0 [13907d55] + HaltonSequences v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [18e54dd8] + IntegerMathUtils v0.1.2 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [77ba4419] + NaNMath v1.1.2 [b8a86587] + NearestNeighbors v0.4.21 [71847384] + NeutralLandscapes v0.1.5 [bac558e1] + OrderedCollections v1.8.0 [90014a1f] + PDMats v0.11.32 [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.4 [4c63d2b9] + StatsFuns v1.3.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.0.16+0 [bea87d4a] + SuiteSparse_jll v7.8.3+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 3.99s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 64.37s ################################################################################ # Testing # Testing NeutralLandscapes Status `/tmp/jl_iHV1Qf/Project.toml` [71847384] NeutralLandscapes v0.1.5 [1bc83da4] SafeTestsets v0.1.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_iHV1Qf/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [34da2185] Compat v4.16.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [1a297f60] FillArrays v1.13.0 [13907d55] HaltonSequences v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [18e54dd8] IntegerMathUtils v0.1.2 [92d709cd] IrrationalConstants v0.2.4 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.2 [b8a86587] NearestNeighbors v0.4.21 [71847384] NeutralLandscapes v0.1.5 [bac558e1] OrderedCollections v1.8.0 [90014a1f] PDMats v0.11.32 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [27ebfcd6] Primes v0.5.7 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.4 [4c63d2b9] StatsFuns v1.3.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.0.16+0 [bea87d4a] SuiteSparse_jll v7.8.3+2 [8e850b90] libblastrampoline_jll v5.12.0+0 Testing Running tests... Precompiling packages... 5506.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 55 already precompiled. ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.DiamondSquare, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(sau::NeutralLandscapes.SpatiallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatial.jl:30 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatial.jl:30 ┌ Warning: fit(t, x) is deprecated: use fit(t, x, dims=2) instead │ caller = _update(stau::NeutralLandscapes.SpatiotemporallyAutocorrelatedUpdater{NeutralLandscapes.MidpointDisplacement, Float64, Float64}, mat::Matrix{Float64}) at spatiotemporal.jl:32 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/updaters/spatiotemporal.jl:32 Test Summary: | Pass Total Time updaters | 123 123 56.8s 57.044078 seconds (15.82 M allocations: 858.331 MiB, 1.37% gc time, 59.11% compilation time: 5% of which was recompilation) Test Summary: | Pass Total Time planar gradient | 3 3 5.0s 4.973368 seconds (3.68 M allocations: 201.270 MiB, 6.56% gc time, 99.57% compilation time) ┌ Warning: `find_root` is deprecated, use `find_root!` instead. │ caller = label(mat::Matrix{Float64}, neighborhood::Symbol) at classify.jl:139 └ @ Core ~/.julia/packages/NeutralLandscapes/W7lBj/src/classify.jl:139 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 53 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x76540d5b4f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#397 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:329 #start_profile_listener##0 at ./Base.jl:349 jfptr_YY.start_profile_listenerYY.YY.0_55973.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_10endiannessE1ELb1EEEE10getSectionEj at /opt/julia/bin/../lib/julia/libLLVM.so.18.1jl (unknown line) unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x707a39519f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#397 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] _trywait at ./asyncevent.jl:185 profile_printing_listener at ./Base.jl:329 #start_profile_listener##0 at ./Base.jl:349 jfptr_YY.start_profile_listenerYY.YY.0_55973.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 jl_apply at /source/src/julia.h:2347 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#397 at ./condition.jl:141 wait at ./condition.jl:136 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 jfptr_wait_76018.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 subprocess_handler at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2383 unknown function (ip: 0x707a3088def3) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 #202 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2323 withenv at ./env.jl:265 #187 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2144 with_temp_env at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2002 #183 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2111 #mktempdir#21 at ./file.jl:899 unknown function (ip: 0x707a308806bc) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 mktempdir at ./file.jl:895 mktempdir at ./file.jl:895 #sandbox#179 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2058 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2050 unknown function (ip: 0x707a30879cf1) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 #test#190 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2308 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/Operations.jl:2220 [inlined] #test#170 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:486 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:465 unknown function (ip: 0x707a30878ef1) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 #test#84 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:164 unknown function (ip: 0x707a30870428) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:153 #test#82 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:152 [inlined] #test#81 at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 [inlined] test at /source/usr/share/julia/stdlib/v1.12/Pkg/src/API.jl:151 unknown function (ip: 0x707a3086eadf) at (unknown file) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 jl_apply at /source/src/julia.h:2347 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:692 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:1032 jl_toplevel_eval_flex at /source/src/toplevel.c:972 ijl_toplevel_eval at /source/src/toplevel.c:1044 ijl_toplevel_eval_in at /source/src/toplevel.c:1089 eval at ./boot.jl:489 include_string at ./loading.jl:2861 _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 _include at ./loading.jl:2921 include at ./Base.jl:303 exec_options at ./client.jl:328 _start at ./client.jl:560 jfptr__start_60056.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3452 [inlined] ijl_apply_generic at /source/src/gf.c:3652 jl_apply at /source/src/julia.h:2347 [inlined] true_main at /source/src/jlapi.c:951 jl_repl_entrypoint at /source/src/jlapi.c:1111 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x707a394bb249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [53] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/NeutralLandscapes/W7lBj/test/rand.jl:47 unknown function (ip: 0x76540d5b4f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 poptask at ./task.jl:1187 wait at ./task.jl:1199 #wait#397 at ./condition.jl:141 PkgEval terminated after 2722.64s: test duration exceeded the time limit