Package evaluation of TMLE on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T19:43:15.610 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.65s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8afdd2fb] + TMLE v0.19.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [15f4f7f2] + AutoHashEquals v2.2.0 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [324d7699] + CategoricalArrays v0.10.8 [af321ab8] + CategoricalDistributions v0.1.15 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.25.2 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [85a47980] + Dictionaries v0.4.5 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [38e38edf] + GLM v1.9.0 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.5 [7869d1d1] + IRTools v0.4.15 [313cdc1a] + Indexing v1.1.1 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.35 [b964fa9f] + LaTeXStrings v1.4.0 [92ad9a40] + LearnAPI v1.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [a7f614a8] + MLJBase v1.8.1 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.11.1 [d491faf4] + MLJModels v0.17.9 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.7.3 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.30 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [c1ae055f] + RealDot v0.1.0 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [f2b01f46] + Roots v2.2.8 [321657f4] + ScientificTypes v3.1.0 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [03a91e81] + SplitApplyCombine v1.2.3 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [a19d573c] + StatisticalMeasures v0.2.1 [c062fc1d] + StatisticalMeasuresBase v0.1.2 [64bff920] + StatisticalTraits v3.4.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [8afdd2fb] + TMLE v0.19.0 [ab02a1b2] + TableOperations v1.2.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1425.15s ################################################################################ # Testing # Testing TMLE Status `/tmp/jl_aPPJOS/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [6af48e0c] CausalTables v1.3.1 [861a8166] Combinatorics v1.0.3 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 [09f84164] HypothesisTests v0.11.5 [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 [a7f614a8] MLJBase v1.8.1 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.1 [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.12 [bac558e1] OrderedCollections v1.8.1 [860ef19b] StableRNGs v1.0.3 [a19d573c] StatisticalMeasures v0.2.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.5 [8afdd2fb] TMLE v0.19.0 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.1 [ddb6d928] YAML v0.4.14 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_aPPJOS/Manifest.toml` [47edcb42] ADTypes v1.15.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 [15f4f7f2] AutoHashEquals v2.2.0 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [af321ab8] CategoricalDistributions v0.1.15 [6af48e0c] CausalTables v1.3.1 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [85a47980] Dictionaries v0.4.5 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [38e38edf] GLM v1.9.0 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.13.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [09f84164] HypothesisTests v0.11.5 [7869d1d1] IRTools v0.4.15 [313cdc1a] Indexing v1.1.1 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.35 [b964fa9f] LaTeXStrings v1.4.0 [92ad9a40] LearnAPI v1.0.1 [d3d80556] LineSearches v7.4.0 [7a12625a] LinearMaps v3.11.4 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [a7f614a8] MLJBase v1.8.1 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.1 [e80e1ace] MLJModelInterface v1.11.1 [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.12 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [fa8bd995] MetaGraphsNext v0.7.3 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [872c559c] NNlib v0.9.30 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [d9ec5142] NamedTupleTools v0.14.3 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [54e16d92] PrettyPrinting v0.4.2 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [f2b01f46] Roots v2.2.8 [321657f4] ScientificTypes v3.1.0 [30f210dd] ScientificTypesBase v3.0.0 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [1277b4bf] ShiftedArrays v2.0.0 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [a0a7dd2c] SparseMatricesCSR v0.6.9 [276daf66] SpecialFunctions v2.5.1 [03a91e81] SplitApplyCombine v1.2.3 [171d559e] SplittablesBase v0.1.15 [860ef19b] StableRNGs v1.0.3 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [a19d573c] StatisticalMeasures v0.2.1 [c062fc1d] StatisticalMeasuresBase v0.1.2 [64bff920] StatisticalTraits v3.4.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 [09ab397b] StructArrays v0.7.1 [856f2bd8] StructTypes v1.11.0 [8afdd2fb] TMLE v0.19.0 [ab02a1b2] TableOperations v1.2.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [3a884ed6] UnPack v1.0.2 [013be700] UnsafeAtomics v0.3.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [009559a3] XGBoost v2.5.1 [ddb6d928] YAML v0.4.14 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [4ee394cb] CUDA_Driver_jll v12.9.0+0 [76a88914] CUDA_Runtime_jll v0.18.0+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [a5c6f535] XGBoost_jll v2.0.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling MLJLinearModels... 2430.0 ms ✓ NLSolversBase 4764.2 ms ✓ LineSearches 6299.2 ms ✓ Optim 9355.9 ms ✓ MLJLinearModels 4 dependencies successfully precompiled in 25 seconds. 77 already precompiled. Precompiling ArrayInterfaceChainRulesExt... 1728.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. Test Summary: | Pass Total Time Test expected_value | 3 3 58.1s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 12.2s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 20.4s Test Summary: | Pass Total Time Test selectcols | 5 5 2.3s Test Summary: | Pass Total Time Test SCM | 17 17 4.3s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.2s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 5.0s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.4s Test Summary: | Pass Total Time Test ConditionalDistribution | 3 3 0.3s Test Summary: | Pass Total Time Test CMRelevantFactors | 2 2 0.6s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 5 5 7.4s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: binary outcome | 9 9 49.5s Test Summary: | Pass Total Time Test MLConditionalDistributionEstimator: continuous outcome | 7 7 12.7s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Binary outcome | 13 13 9.2s Test Summary: | Pass Total Time Test SampleSplitMLConditionalDistributionEstimator: Continuous outcome | 7 7 0.9s Test Summary: | Pass Total Time Test Conditional Distribution with no parents fits a marginal | 3 3 1.6s Test Summary: | Pass Total Time Test nomissing | 5 5 6.9s Test Summary: | Pass Total Time Test estimation with missing values and ordered factor treatment | 2 2 1m24.8s Test Summary: | Pass Total Time Test cov | 2 2 5.5s Test Summary: | Pass Total Time Test composition CM(1) - CM(0) = ATE(1,0) | 8 8 1m25.3s Test Summary: | Pass Total Time Test compose multidimensional function | 8 8 3.2s Precompiling JSONExt... 7190.4 ms ✓ Zygote → ZygoteDistancesExt 29531.0 ms ✓ TMLE → JSONExt 2 dependencies successfully precompiled in 49 seconds. 242 already precompiled. Test Summary: | Pass Total Time Test Joint Interaction | 19 19 1m18.7s Test Summary: | Pass Total Time Test CausalStratifiedCV | 8 8 6.3s WARNING: replacing module TestEstimands. Test Summary: | Pass Total Time Test StatisticalCMCompositeEstimand | 10 10 7.1s Test Summary: | Pass Total Time Test standardization of StatisticalCMCompositeEstimand | 10 10 2.8s Test Summary: | Pass Total Time Test structs are concrete types | 3 3 0.0s Test Summary: | Pass Total Time Test dictionary conversion | 8 8 9.7s Test Summary: | Pass Total Time Test control_case_settings | 6 6 11.6s Test Summary: | Pass Total Time Test unique_treatment_values | 2 2 7.9s Test Summary: | Pass Total Time factorialEstimand errors | 2 2 3.2s Test Summary: | Pass Total Time Test factorial CM | 2 2 5.6s Test Summary: | Pass Total Time Test factorial ATE | 4 4 6.5s Test Summary: | Pass Total Time Test factorial AIE | 3 3 3.4s Test Summary: | Pass Total Time Test factorialEstimands | 2 2 0.1s Test Summary: | Pass Total Time Test ps_lower_bound | 5 5 0.1s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 1 treatment | 4 4 14.6s Test Summary: | Pass Total Time Test clever_covariate_and_weights: 2 treatments | 2 2 0.3s Test Summary: | Pass Total Time Test compute_offset, clever_covariate_and_weights: 3 treatments | 2 2 18.7s Test Summary: | Pass Total Time Test gradient_and_plugin_estimate | 5 5 22.1s Test Summary: | Pass Total Time Test Fluctuation with 1 Treatments | 21 21 8.8s Test Summary: | Pass Total Time Test Fluctuation with 2 Treatments | 11 11 8.0s Test Summary: | Pass Total Time Test same_type_nt | 6 6 0.6s ┌ Warning: `TMLEE(args...; kwargs...)` is deprecated, use `Tmle(args...; kwargs...)` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 ┌ Warning: `OSE(args...; kwargs...)` is deprecated, use `Ose(args...; kwargs...)` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 ┌ Warning: `NAIVE(args...; kwargs...)` is deprecated, use `Plugin(args...; kwargs...)` instead. │ caller = macro expansion at Test.jl:677 [inlined] └ @ Core /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 Test Summary: | Pass Total Time Deprecation | 3 3 7.6s Test Summary: | Pass Total Time Test CMRelevantFactorsEstimator | 11 11 8.3s ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LinearRegressor` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{AbstractVector{ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.Continuous}} └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:237 ┌ Error: Problem fitting the machine machine(LinearRegressor(fit_intercept = true, …), …). └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:694 [ Info: Running type checks... ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LinearRegressor` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{AbstractVector{ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{ScientificTypesBase.Continuous}} └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:237 [ Info: It seems an upstream node in a learning network is providing data of incompatible scitype. See above. ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LogisticClassifier` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{Union{AbstractVector{ScientificTypesBase.Continuous}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}}}, AbstractVector{ScientificTypesBase.Continuous}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{<:ScientificTypesBase.Finite}} └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:237 ┌ Error: Problem fitting the machine machine(LogisticClassifier(lambda = 2.220446049250313e-16, …), …). └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:694 [ Info: Running type checks... ┌ Warning: The number and/or types of data arguments do not match what the specified model │ supports. Suppress this type check by specifying `scitype_check_level=0`. │ │ Run `@doc MLJLinearModels.LogisticClassifier` to learn more about your model's requirements. │ │ Commonly, but non exclusively, supervised models are constructed using the syntax │ `machine(model, X, y)` or `machine(model, X, y, w)` while most other models are │ constructed with `machine(model, X)`. Here `X` are features, `y` a target, and `w` │ sample or class weights. │ │ In general, data in `machine(model, data...)` is expected to satisfy │ │ scitype(data) <: MLJ.fit_data_scitype(model) │ │ In the present case: │ │ scitype(data) = Tuple{ScientificTypesBase.Table{Union{AbstractVector{ScientificTypesBase.Continuous}, AbstractVector{ScientificTypesBase.OrderedFactor{2}}}}, AbstractVector{ScientificTypesBase.Continuous}} │ │ fit_data_scitype(model) = Tuple{ScientificTypesBase.Table{<:AbstractVector{<:ScientificTypesBase.Continuous}}, AbstractVector{<:ScientificTypesBase.Finite}} └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:237 [ Info: It seems an upstream node in a learning network is providing data of incompatible scitype. See above. [ Info: Estimating nuisance parameters. [ Info: Estimating: P₀(G25 Other extrapyramidal and movement disorders | 2:14983:G:A, PC1, PC2, PC3, PC4, PC5, PC6) ┌ Error: Problem fitting the machine machine(LinearBinaryClassifier(fit_intercept = false, …), …). └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:694 [ Info: Running type checks... [ Info: Type checks okay. ┌ Error: Problem fitting the machine machine(Fluctuation(Ψ = TMLE.StatisticalATE(Symbol("G25 Other extrapyramidal and movement disorders"), OrderedCollections.OrderedDict{Symbol, @NamedTuple{control::String, case::String}}(Symbol("2:14983:G:A") => (control = "AG", case = "GG")), OrderedCollections.OrderedDict(Symbol("2:14983:G:A") => (:PC1, :PC2, :PC3, :PC4, :PC5, :PC6)), ()), …), …). └ @ MLJBase ~/.julia/packages/MLJBase/F1Eh6/src/machines.jl:694 [ Info: Running type checks... [ Info: Type checks okay. Test Summary: | Pass Total Time Test FitFailedError | 6 6 1m17.6s Test Summary: | Pass Total Time Test structs are concrete types | 3 3 0.0s Test Summary: | Pass Total Time Test ATE on perinatal dataset. | 13 13 41.0s Test Summary: | Pass Total Time Test accelerations | 6 6 50.5s Test Summary: | Pass Total Time Test Double Robustness ATE on continuous_outcome_categorical_treatment_pb | 19 19 29.9s Test Summary: | Pass Total Time Test Double Robustness ATE on binary_outcome_binary_treatment_pb | 16 16 24.2s Test Summary: | Pass Total Time Test Double Robustness ATE on continuous_outcome_binary_treatment_pb | 16 16 30.4s Test Summary: | Pass Total Time Test Double Robustness ATE with two treatment variables | 30 30 1m18.5s Test Summary: | Pass Total Time Test Double Robustness AIE on binary_outcome_binary_treatment_pb | 18 18 1m02.2s Test Summary: | Pass Total Time Test Double Robustness AIE on continuous_outcome_binary_treatment_pb | 16 16 26.8s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 447 running 1 of 1 signal (10): User defined signal 1 unknown function (ip: 0x742dad159275) expf at /lib/x86_64-linux-gnu/libm.so.6 (unknown line) _ZN4dmlc12OMPException3RunIZNK7xgboost6common9TransformILb0EE9EvaluatorIZNS2_3obj20SoftmaxMultiClassObj11GetGradientERKNS2_16HostDeviceVectorIfEERKNS2_8MetaInfoEiPNS9_INS2_6detail20GradientPairInternalIfEEEEEUlmNS3_4SpanISI_Lm18446744073709551615EEENSL_IKfLm18446744073709551615EEESO_SO_NSL_IiLm18446744073709551615EEEE_E9LaunchCPUIJSJ_SB_SB_SB_NS9_IiEEEEEvSQ_DpPT_EUlmE_JmEEEvT_DpT0_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost6common11ParallelForImZNKS0_9TransformILb0EE9EvaluatorIZNS_3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS7_INS_6detail20GradientPairInternalIfEEEEEUlmNS0_4SpanISG_Lm18446744073709551615EEENSJ_IKfLm18446744073709551615EEESM_SM_NSJ_IiLm18446744073709551615EEEE_E9LaunchCPUIJSH_S9_S9_S9_NS7_IiEEEEEvSO_DpPT_EUlmE_EEvT_iNS0_5SchedET0_._omp_fn.3 at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) GOMP_parallel at /workspace/srcdir/gcc-13.2.0/libgomp/parallel.c:178 _ZN7xgboost6common11ParallelForImZNKS0_9TransformILb0EE9EvaluatorIZNS_3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS7_INS_6detail20GradientPairInternalIfEEEEEUlmNS0_4SpanISG_Lm18446744073709551615EEENSJ_IKfLm18446744073709551615EEESM_SM_NSJ_IiLm18446744073709551615EEEE_E9LaunchCPUIJSH_S9_S9_S9_NS7_IiEEEEEvSO_DpPT_EUlmE_EEvT_iNS0_5SchedET0_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS2_INS_6detail20GradientPairInternalIfEEEE at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost10collective15ApplyWithLabelsIZNS_11LearnerImpl11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS3_INS_6detail20GradientPairInternalIfEEEEEUlvE_EEvS9_PvmOT_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost11LearnerImpl13UpdateOneIterEiSt10shared_ptrINS_7DMatrixEE at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) XGBoosterUpdateOneIter at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) XGBoosterUpdateOneIter at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/Lib.jl:282 [inlined] xgbcall at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/Lib.jl:25 [inlined] #updateone!#72 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:374 updateone! at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:369 [inlined] #update!#77 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:446 update! at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:429 [inlined] #xgboost#82 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:602 xgboost at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:579 unknown function (ip: 0x742d8b95cfe6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 fit at /home/pkgeval/.julia/packages/MLJXGBoostInterface/i2nzW/src/MLJXGBoostInterface.jl:185 fit at /home/pkgeval/.julia/packages/MLJXGBoostInterface/i2nzW/src/MLJXGBoostInterface.jl:171 unknown function (ip: 0x742d8b95aac5) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #fit_only!#59 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:692 fit_only! at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:617 [inlined] #fit_only!#64 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:763 fit_only! at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:746 [inlined] #82 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/composition/learning_networks/nodes.jl:237 unknown function (ip: 0x742d8ba8d7df) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7546544e5b22) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7546544dd11d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x7546544d16a6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7546544d13ad) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7546544d0d9d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7546544cd226) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x75465551c249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000742d2ca033a0 Total snapshots: 125. Utilization: 100% ╎115 …ning_networks/nodes.jl:237; (::MLJBase.var"#82#84"{Base.Pairs{Symbol, … ╎ 115 …LJBase/src/machines.jl:746; fit_only! ╎ 1 …JBase/src/machines.jl:750; fit_only!(mach::MLJBase.Machine{Symbol, A… ╎ 1 …ing_networks/nodes.jl:490; glb(::MLJBase.Node{MLJBase.Machine{Symbo… ╎ 1 …ing_networks/nodes.jl:366; node ╎ 1 …ng_networks/nodes.jl:133; Node ╎ ╎ 1 …ng_networks/nodes.jl:66; MLJBase.Node(::typeof(tuple), ::Nothing… ╎ ╎ 1 @Base/array.jl:2239; vcat(::Vector{MLJBase.AbstractNode}, ::Vect… ╎ ╎ 1 …se/abstractarray.jl:2084; cat ╎ ╎ 1 …e/abstractarray.jl:2084; #cat#185 ╎ ╎ 1 …e/abstractarray.jl:1820; _cat(::Val{1}, ::Vector{MLJBase.Abs… ╎ 114 …JBase/src/machines.jl:763; fit_only!(mach::MLJBase.Machine{Symbol, A… ╎ 114 …JBase/src/machines.jl:617; fit_only! ╎ 114 …JBase/src/machines.jl:692; fit_only!(mach::MLJBase.Machine{Symbol,… ╎ 114 …JXGBoostInterface.jl:171; fit(model::MLJXGBoostInterface.XGBoostC… ╎ ╎ 114 …JXGBoostInterface.jl:185; fit(model::MLJXGBoostInterface.XGBoost… ╎ ╎ 114 …oost/src/booster.jl:579; kwcall(::@NamedTuple{test::Int64, num_… ╎ ╎ 114 …oost/src/booster.jl:602; xgboost(::XGBoost.DMatrix; num_round:… ╎ ╎ 114 …oost/src/booster.jl:429; update! ╎ ╎ 114 …ost/src/booster.jl:446; update!(::XGBoost.Booster, ::XGBoost… ╎ ╎ ╎ 114 …ost/src/booster.jl:369; updateone! ╎ ╎ ╎ 114 …st/src/booster.jl:374; updateone!(b::XGBoost.Booster, Xy::… ╎ ╎ ╎ 114 …GBoost/src/Lib.jl:25; xgbcall 114╎ ╎ ╎ 114 …GBoost/src/Lib.jl:282; XGBoosterUpdateOneIter Task 0x0000742d2ca02720 Total snapshots: 16. Utilization: 100% ╎16 …rning_networks/nodes.jl:237; (::MLJBase.var"#82#84"{Base.Pairs{Symbol, A… ╎ 16 @MLJBase/src/machines.jl:746; fit_only! ╎ 16 …LJBase/src/machines.jl:763; fit_only!(mach::MLJBase.Machine{Symbol, An… ╎ 16 …LJBase/src/machines.jl:617; fit_only! ╎ 16 …JBase/src/machines.jl:692; fit_only!(mach::MLJBase.Machine{Symbol, A… ╎ 16 …LJXGBoostInterface.jl:171; fit(model::MLJXGBoostInterface.XGBoostCl… ╎ ╎ 16 …LJXGBoostInterface.jl:185; fit(model::MLJXGBoostInterface.XGBoostC… ╎ ╎ 16 …Boost/src/booster.jl:579; kwcall(::@NamedTuple{test::Int64, num_r… ╎ ╎ 16 …Boost/src/booster.jl:602; xgboost(::XGBoost.DMatrix; num_round::… ╎ ╎ 16 …oost/src/booster.jl:429; update! ╎ ╎ 16 …oost/src/booster.jl:446; update!(::XGBoost.Booster, ::XGBoost.… ╎ ╎ ╎ 16 …oost/src/booster.jl:369; updateone! ╎ ╎ ╎ 16 …ost/src/booster.jl:374; updateone!(b::XGBoost.Booster, Xy::X… ╎ ╎ ╎ 16 @XGBoost/src/Lib.jl:25; xgbcall 15╎ ╎ ╎ 16 …GBoost/src/Lib.jl:282; XGBoosterUpdateOneIter ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000754647e00010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:2011; test ╎ ╎ ╎ 1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1021; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [447] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/TMLE/ab8s0/test/counterfactual_mean_based/double_robustness_aie.jl:106 unknown function (ip: 0x742dad15925e) expf at /lib/x86_64-linux-gnu/libm.so.6 (unknown line) _ZN4dmlc12OMPException3RunIZNK7xgboost6common9TransformILb0EE9EvaluatorIZNS2_3obj20SoftmaxMultiClassObj11GetGradientERKNS2_16HostDeviceVectorIfEERKNS2_8MetaInfoEiPNS9_INS2_6detail20GradientPairInternalIfEEEEEUlmNS3_4SpanISI_Lm18446744073709551615EEENSL_IKfLm18446744073709551615EEESO_SO_NSL_IiLm18446744073709551615EEEE_E9LaunchCPUIJSJ_SB_SB_SB_NS9_IiEEEEEvSQ_DpPT_EUlmE_JmEEEvT_DpT0_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost6common11ParallelForImZNKS0_9TransformILb0EE9EvaluatorIZNS_3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS7_INS_6detail20GradientPairInternalIfEEEEEUlmNS0_4SpanISG_Lm18446744073709551615EEENSJ_IKfLm18446744073709551615EEESM_SM_NSJ_IiLm18446744073709551615EEEE_E9LaunchCPUIJSH_S9_S9_S9_NS7_IiEEEEEvSO_DpPT_EUlmE_EEvT_iNS0_5SchedET0_._omp_fn.3 at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) GOMP_parallel at /workspace/srcdir/gcc-13.2.0/libgomp/parallel.c:178 _ZN7xgboost6common11ParallelForImZNKS0_9TransformILb0EE9EvaluatorIZNS_3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS7_INS_6detail20GradientPairInternalIfEEEEEUlmNS0_4SpanISG_Lm18446744073709551615EEENSJ_IKfLm18446744073709551615EEESM_SM_NSJ_IiLm18446744073709551615EEEE_E9LaunchCPUIJSH_S9_S9_S9_NS7_IiEEEEEvSO_DpPT_EUlmE_EEvT_iNS0_5SchedET0_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost3obj20SoftmaxMultiClassObj11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS2_INS_6detail20GradientPairInternalIfEEEE at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost10collective15ApplyWithLabelsIZNS_11LearnerImpl11GetGradientERKNS_16HostDeviceVectorIfEERKNS_8MetaInfoEiPNS3_INS_6detail20GradientPairInternalIfEEEEEUlvE_EEvS9_PvmOT_ at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) _ZN7xgboost11LearnerImpl13UpdateOneIterEiSt10shared_ptrINS_7DMatrixEE at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) XGBoosterUpdateOneIter at /home/pkgeval/.julia/artifacts/271facf086d4d0b748a1835be4e1208876f382f9/lib/libxgboost.so (unknown line) XGBoosterUpdateOneIter at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/Lib.jl:282 [inlined] xgbcall at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/Lib.jl:25 [inlined] #updateone!#72 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:374 updateone! at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:369 [inlined] #update!#77 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:446 update! at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:429 [inlined] #xgboost#82 at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:602 xgboost at /home/pkgeval/.julia/packages/XGBoost/nqMqQ/src/booster.jl:579 unknown function (ip: 0x742d8b95cfe6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 fit at /home/pkgeval/.julia/packages/MLJXGBoostInterface/i2nzW/src/MLJXGBoostInterface.jl:185 fit at /home/pkgeval/.julia/packages/MLJXGBoostInterface/i2nzW/src/MLJXGBoostInterface.jl:171 unknown function (ip: 0x742d8b95aac5) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #fit_only!#59 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:692 fit_only! at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:617 [inlined] #fit_only!#64 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:763 fit_only! at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/machines.jl:746 [inlined] #82 at /home/pkgeval/.julia/packages/MLJBase/F1Eh6/src/composition/learning_networks/nodes.jl:237 unknown function (ip: 0x742d8ba8d7df) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 1433060845 (Pool: 1433038021; Big: 22824); GC: 455 PkgEval terminated after 2723.04s: test duration exceeded the time limit