Package evaluation of StructuralIdentifiability on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T09:22:11.060 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.36s ################################################################################ # Installation # Installing StructuralIdentifiability... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [220ca800] + StructuralIdentifiability v0.5.15 Updating `~/.julia/environments/v1.11/Manifest.toml` ⌅ [c3fe647b] + AbstractAlgebra v0.44.13 [a9b6321e] + Atomix v1.1.1 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 [e2ba6199] + ExprTools v0.1.10 [0b43b601] + Groebner v0.9.4 [18e54dd8] + IntegerMathUtils v0.1.2 [c8e1da08] + IterTools v1.10.0 [692b3bcd] + JLLWrappers v1.7.0 [1914dd2f] + MacroTools v0.5.16 ⌅ [2edaba10] + Nemo v0.49.5 [bac558e1] + OrderedCollections v1.8.1 [3e851597] + ParamPunPam v0.5.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [fb686558] + RandomExtensions v0.4.4 [220ca800] + StructuralIdentifiability v0.5.15 [a759f4b9] + TimerOutputs v0.5.29 [013be700] + UnsafeAtomics v0.3.0 ⌅ [e134572f] + FLINT_jll v300.200.201+0 [656ef2d0] + OpenBLAS32_jll v0.3.29+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [781609d7] + GMP_jll v6.3.0+0 [3a97d323] + MPFR_jll v4.2.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.73s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 192.81s ################################################################################ # Testing # Testing StructuralIdentifiability Status `/tmp/jl_AdEQxP/Project.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.13 [2a0fbf3d] CPUSummary v0.2.6 [861a8166] Combinatorics v1.0.3 [864edb3b] DataStructures v0.18.22 [0b43b601] Groebner v0.9.4 [c8e1da08] IterTools v1.10.0 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [3e851597] ParamPunPam v0.5.2 ⌅ [aea7be01] PrecompileTools v1.2.1 [27ebfcd6] Primes v0.5.7 [276daf66] SpecialFunctions v2.5.1 [220ca800] StructuralIdentifiability v0.5.15 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_AdEQxP/Manifest.toml` ⌅ [c3fe647b] AbstractAlgebra v0.44.13 [4c88cf16] Aqua v0.8.13 [a9b6321e] Atomix v1.1.1 [2a0fbf3d] CPUSummary v0.2.6 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [adafc99b] CpuId v0.3.1 [864edb3b] DataStructures v0.18.22 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [0b43b601] Groebner v0.9.4 [615f187c] IfElse v0.1.1 [18e54dd8] IntegerMathUtils v0.1.2 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [692b3bcd] JLLWrappers v1.7.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [2edaba10] Nemo v0.49.5 [bac558e1] OrderedCollections v1.8.1 [3e851597] ParamPunPam v0.5.2 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.10.4 [fb686558] RandomExtensions v0.4.4 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [220ca800] StructuralIdentifiability v0.5.15 ⌅ [98d24dd4] TestSetExtensions v2.0.0 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e134572f] FLINT_jll v300.200.201+0 [656ef2d0] OpenBLAS32_jll v0.3.29+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [781609d7] GMP_jll v6.3.0+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [3a97d323] MPFR_jll v4.2.1+0 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling TestExt... 2489.0 ms ✓ AbstractAlgebra → TestExt 1 dependency successfully precompiled in 3 seconds. 16 already precompiled. Resolving package versions... Updating `/tmp/jl_AdEQxP/Project.toml` [961ee093] + ModelingToolkit v10.6.0 Updating `/tmp/jl_AdEQxP/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.6.3 [70df07ce] + BracketingNonlinearSolve v1.3.0 [d360d2e6] + ChainRulesCore v1.25.2 [fb6a15b2] + CloseOpenIntervals v0.1.13 [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.176.0 [459566f4] + DiffEqCallbacks v4.8.0 [77a26b50] + DiffEqNoiseProcess v5.24.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [8d63f2c5] + DispatchDoctor v0.4.21 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.12 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.3 [1a297f60] + FillArrays v1.13.0 [64ca27bc] + FindFirstFunctions v1.4.1 [6a86dc24] + FiniteDiff v2.27.0 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.3.1 [86223c79] + Graphs v1.13.0 [34004b35] + HypergeometricFunctions v0.3.28 [3263718b] + ImplicitDiscreteSolve v0.1.2 [d25df0c9] + Inflate v0.1.5 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.1.2 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.16.1 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.8 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [d3d80556] + LineSearches v7.4.0 [7ed4a6bd] + LinearSolve v3.18.2 [d8e11817] + MLStyle v0.4.17 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v10.6.0 [2e0e35c7] + Moshi v0.3.6 [46d2c3a1] + MuladdMacro v0.2.4 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.9.0 [be0214bd] + NonlinearSolveBase v1.12.0 [5959db7a] + NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.6.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [6fe1bfb0] + OffsetArrays v1.17.0 [429524aa] + Optim v1.13.2 [bbf590c4] + OrdinaryDiffEqCore v1.26.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.4 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [85a6dd25] + PositiveFactorizations v0.2.4 [08abe8d2] + PrettyTables v2.4.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.1.1 [79098fc4] + Rmath v0.8.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [9dfe8606] + SCCNonlinearSolve v1.3.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.102.1 [19f34311] + SciMLJacobianOperators v0.1.6 [c0aeaf25] + SciMLOperators v1.3.1 [431bcebd] + SciMLPublic v1.0.0 [53ae85a6] + SciMLStructures v1.7.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.5.0 [699a6c99] + SimpleTraits v0.9.4 [ce78b400] + SimpleUnPack v1.1.0 [a2af1166] + SortingAlgorithms v1.2.1 [0a514795] + SparseMatrixColorings v0.4.21 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.41 [19f23fe9] + SymbolicLimits v0.2.2 [d1185830] + SymbolicUtils v3.29.0 [0c5d862f] + Symbolics v6.43.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [ed4db957] + TaskLocalValues v0.1.2 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [410a4b4d] + Tricks v0.1.10 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.23.1 [a7c27f48] + Unityper v0.1.6 [897b6980] + WeakValueDicts v0.1.0 [1d5cc7b8] + IntelOpenMP_jll v2025.0.4+0 [856f044c] + MKL_jll v2025.0.1+1 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+0 [9fa8497b] + Future v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [a63ad114] + Mmap v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [4607b0f0] + SuiteSparse Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Resolving package versions... Updating `/tmp/jl_AdEQxP/Project.toml` [0c5d862f] + Symbolics v6.43.0 No Changes to `/tmp/jl_AdEQxP/Manifest.toml` Precompiling ModelingToolkit... 4746.0 ms ✓ LazyArrays 1329.3 ms ✓ MaybeInplace 1778.3 ms ✓ Accessors → UnitfulExt 3437.3 ms ✓ SciMLOperators 1017.6 ms ✓ TruncatedStacktraces 1784.3 ms ✓ SimpleTraits 1379.9 ms ✓ Functors 1679.1 ms ✓ Latexify → SparseArraysExt 10797.0 ms ✓ DynamicQuantities 948.3 ms ✓ DispatchDoctor → DispatchDoctorEnzymeCoreExt 1491.8 ms ✓ DispatchDoctor → DispatchDoctorChainRulesCoreExt 16319.9 ms ✓ CommonMark 14390.5 ms ✓ SparseMatrixColorings 6301.2 ms ✓ MultivariatePolynomials 859.1 ms ✓ ADTypes → ADTypesChainRulesCoreExt 3209.5 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 842.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 815.4 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 1428.5 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 1312.2 ms ✓ ResettableStacks 1351.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1469.3 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 3369.8 ms ✓ SymbolicIndexingInterface 4141.1 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 953.7 ms ✓ CloseOpenIntervals 1110.0 ms ✓ LayoutPointers 7192.0 ms ✓ ForwardDiff 4089.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 3579.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 2840.3 ms ✓ LazyArrays → LazyArraysStaticArraysExt 2036.4 ms ✓ LazyArrays → LazyArraysBlockArraysExt 1196.7 ms ✓ MaybeInplace → MaybeInplaceSparseArraysExt 1058.1 ms ✓ SciMLOperators → SciMLOperatorsStaticArraysCoreExt 1481.2 ms ✓ SciMLOperators → SciMLOperatorsSparseArraysExt 8789.7 ms ✓ Graphs 3502.2 ms ✓ DynamicQuantities → DynamicQuantitiesUnitfulExt 1562.1 ms ✓ DynamicQuantities → DynamicQuantitiesLinearAlgebraExt 69491.5 ms ✓ JuliaFormatter 1692.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 3814.1 ms ✓ DynamicPolynomials 5100.7 ms ✓ RecursiveArrayTools 1982.5 ms ✓ StrideArraysCore 1968.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1299.9 ms ✓ FastPower → FastPowerForwardDiffExt 1609.1 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3155.5 ms ✓ Unitful → ForwardDiffExt 65885.7 ms ✓ SymbolicUtils 3570.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 9226.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 24128.9 ms ✓ SciMLBase 1676.3 ms ✓ Polyester 3858.1 ms ✓ NLSolversBase 6201.8 ms ✓ SymbolicLimits 5238.7 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2724.1 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 7712.7 ms ✓ SciMLJacobianOperators 2935.4 ms ✓ SCCNonlinearSolve 1577.3 ms ✓ FastBroadcast 4535.1 ms ✓ LineSearches 21800.4 ms ✓ LinearSolve 117229.1 ms ✓ Symbolics 7445.0 ms ✓ LineSearch 11349.1 ms ✓ NonlinearSolveBase 2807.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 5380.7 ms ✓ Optim 5286.3 ms ✓ LinearSolve → LinearSolveForwardDiffExt 3029.2 ms ✓ LinearSolve → LinearSolveEnzymeExt 6357.2 ms ✓ LinearSolve → LinearSolveSparseArraysExt 7439.9 ms ✓ Symbolics → SymbolicsForwardDiffExt 7165.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 60121.9 ms ✓ LineSearch → LineSearchLineSearchesExt 20378.0 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 4541.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 3620.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseArraysExt 2973.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLineSearchExt 32080.7 ms ✓ NonlinearSolveBase → NonlinearSolveBaseLinearSolveExt 8328.6 ms ✓ BracketingNonlinearSolve 9263.8 ms ✓ DiffEqBase 3305.0 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 3862.4 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4065.2 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 4112.1 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 5339.8 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 3660.7 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 8686.8 ms ✓ DiffEqCallbacks 8497.8 ms ✓ OrdinaryDiffEqCore 3107.2 ms ✓ NonlinearSolveBase → NonlinearSolveBaseDiffEqBaseExt 3222.4 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveChainRulesCoreExt 21572.5 ms ✓ SimpleNonlinearSolve 83652.5 ms ✓ DiffEqNoiseProcess 17496.5 ms ✓ JumpProcesses 17623.8 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 54247.3 ms ✓ NonlinearSolveSpectralMethods 77487.8 ms ✓ NonlinearSolveQuasiNewton 64921.7 ms ✓ NonlinearSolveFirstOrder 41574.8 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 4439.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 4644.7 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 6263.2 ms ✓ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 5585.7 ms ✓ ImplicitDiscreteSolve 41493.5 ms ✓ NonlinearSolve 422930.7 ms ✓ ModelingToolkit 102 dependencies successfully precompiled in 1606 seconds. 204 already precompiled. Precompiling GroebnerDynamicPolynomialsExt... 10058.8 ms ✓ Groebner → GroebnerDynamicPolynomialsExt 1 dependency successfully precompiled in 10 seconds. 43 already precompiled. Precompiling SymbolicsNemoExt... Info Given SymbolicsNemoExt was explicitly requested, output will be shown live  [ Info: Assuming ((5//8)*(a^2)) != 0 [ Info: Assuming ((5//8)*(a^2)) != 0 118052.8 ms ✓ Symbolics → SymbolicsNemoExt 1 dependency successfully precompiled in 120 seconds. 158 already precompiled. 1 dependency had output during precompilation: ┌ Symbolics → SymbolicsNemoExt │ [Output was shown above] └ Precompiling SymbolicsGroebnerExt... 18234.3 ms ✓ Symbolics → SymbolicsGroebnerExt 1 dependency successfully precompiled in 20 seconds. 163 already precompiled. Precompiling MTKDeepDiffsExt... 39024.6 ms ✓ ModelingToolkit → MTKDeepDiffsExt 1 dependency successfully precompiled in 42 seconds. 307 already precompiled. Precompiling ModelingToolkitSIExt... 55385.2 ms ✓ StructuralIdentifiability → ModelingToolkitSIExt 1 dependency successfully precompiled in 58 seconds. 324 already precompiled. [ Info: Testing started [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y ┌ Warning: New variable c, treating as a scalar parameter └ @ StructuralIdentifiability ~/.julia/packages/StructuralIdentifiability/Tp10P/src/pb_representation.jl:94 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: a [ Info: Parameters: b [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: a, b [ Info: Parameters: k1, k2 [ Info: Inputs: c [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x, y [ Info: Parameters: a, b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y 2.303737 seconds (889.64 k allocations: 44.996 MiB, 99.53% compilation time) 0.001800 seconds (6.77 k allocations: 291.406 KiB) 0.002019 seconds (10.82 k allocations: 485.711 KiB) 0.002196 seconds (10.78 k allocations: 481.289 KiB) 0.002621 seconds (14.51 k allocations: 635.312 KiB) 0.001578 seconds (7.96 k allocations: 362.070 KiB) 0.000992 seconds (7.48 k allocations: 302.023 KiB) 15.623407 seconds (5.73 M allocations: 292.031 MiB, 0.60% gc time, 99.80% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.405595 seconds (99.17 k allocations: 5.136 MiB, 98.17% compilation time) [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: u [ Info: Outputs: y 0.013482 seconds (9.84 k allocations: 541.141 KiB, 89.98% compilation time) [ Info: Summary of the model: [ Info: State variables: x [ Info: Parameters: a, b [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a [ Info: Inputs: u [ Info: Outputs: y1, y2 IOEQS: Dict{QQMPolyRingElem, QQMPolyRingElem}(y1(t)_2 => -y1(t)_0 + y1(t)_2, y2(t)_1 => -a*y2(t)_0 + a*u(t)_0 + y2(t)_1 - u(t)_1) [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a01, a12, a21 [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x0, x1 [ Info: Parameters: a, b, c, d [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, I, W, R [ Info: Parameters: a, bi, bw, gam, k, mu, xi [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2, x3, x4 [ Info: Parameters: alpha, b, beta, c, delta, gama, sigma [ Info: Inputs: [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: b [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2 [ Info: Parameters: a1, a2, a21 [ Info: Inputs: u [ Info: Outputs: y1 [ Info: Summary of the model: [ Info: State variables: x1, x2, x3 [ Info: Parameters: a01, a12, a13, a21, a31 [ Info: Inputs: u [ Info: Outputs: y [ Info: Summary of the model: [ Info: State variables: S, E, In [ Info: Parameters: N, a, b, nu [ Info: Inputs: [ Info: Outputs: y1, y2 [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.00401616 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 6.434118094 seconds [ Info: Dimensions of the Wronskians [3] [ Info: Ranks of the Wronskians computed in 0.085757467 seconds [ Info: Global identifiability assessed in 7.485926209 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.002998941 seconds [ Info: No parameters, so Wronskian computation is not needed [ Info: Global identifiability assessed in 0.813775184 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Global identifiability assessed in 5.3089e-5 seconds [ Info: Assessing local identifiability [ Info: Assessing global identifiability [ Info: Functions to check involve states [ Info: Computing IO-equations [ Info: Computed IO-equations in 0.038785239 seconds [ Info: Computing Wronskians [ Info: Computed Wronskians in 0.377962156 seconds [ Info: Dimensions of the Wronskians [5] [ Info: Ranks of the Wronskians computed in 8.6159e-5 seconds [ Info: Simplifying generating set. Simplification level: standard ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 35 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm15ValueHandleBase12AddToUseListEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm34PreservedCFGCheckerInstrumentation3CFGC1EPKNS_8FunctionEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail17AnalysisPassModelINS_8FunctionE27PreservedCFGCheckerAnalysisNS_17PreservedAnalysesENS_15AnalysisManagerIS2_JEE11InvalidatorEJEE3runERS2_RS6_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15AnalysisManagerINS_8FunctionEJEE13getResultImplEPNS_11AnalysisKeyERS1_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJNS_9StringRefENS_3AnyEEE8CallImplIZNS_34PreservedCFGCheckerInstrumentation17registerCallbacksERNS_28PassInstrumentationCallbacksERNS_15AnalysisManagerINS_8FunctionEJEEEEUlS2_S3_E1_EEvPvS2_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) operator() at /source/usr/include/llvm/ADT/FunctionExtras.h:385 [inlined] runBeforePass > > at /source/usr/include/llvm/IR/PassInstrumentation.h:241 run at /source/usr/include/llvm/IR/PassManager.h:514 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _groebner_learn2 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/groebner/learn_apply.jl:114 groebner_learn2 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/groebner/learn_apply.jl:92 unknown function (ip: 0x72e981fa4b62) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 __groebner_learn1 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/groebner/learn_apply.jl:61 unknown function (ip: 0x72e981f9fb42) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _groebner_learn1 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/groebner/learn_apply.jl:37 unknown function (ip: 0x72e981f9af02) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 groebner_learn0 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/groebner/learn_apply.jl:13 #groebner_learn#253 at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/interface.jl:343 [inlined] groebner_learn at /home/pkgeval/.julia/packages/Groebner/FT1eI/src/interface.jl:341 unknown function (ip: 0x72e981f935d7) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #discover_shape!#92 at /home/pkgeval/.julia/packages/ParamPunPam/wEEQO/src/groebner/paramgb.jl:187 discover_shape! at /home/pkgeval/.julia/packages/ParamPunPam/wEEQO/src/groebner/paramgb.jl:169 [inlined] _paramgb at /home/pkgeval/.julia/packages/ParamPunPam/wEEQO/src/groebner/paramgb.jl:129 #paramgb#89 at /home/pkgeval/.julia/packages/ParamPunPam/wEEQO/src/groebner/paramgb.jl:103 paramgb at /home/pkgeval/.julia/packages/ParamPunPam/wEEQO/src/groebner/paramgb.jl:60 [inlined] #groebner_basis_coeffs#469 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/RationalFunctionFields/RationalFunctionField.jl:514 groebner_basis_coeffs at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/RationalFunctionFields/RationalFunctionField.jl:514 unknown function (ip: 0x72e981f8dbd6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #simplified_generating_set#472 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/RationalFunctionFields/RationalFunctionField.jl:693 simplified_generating_set at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/RationalFunctionFields/RationalFunctionField.jl:693 unknown function (ip: 0x72e9823d78e6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #initial_identifiable_functions#481 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:86 initial_identifiable_functions at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:86 [inlined] #check_identifiability#492 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:178 check_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:178 [inlined] #assess_global_identifiability#503 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:286 assess_global_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/global_identifiability.jl:286 [inlined] macro expansion at ./timing.jl:421 [inlined] #_assess_identifiability#726 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/StructuralIdentifiability.jl:168 _assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/StructuralIdentifiability.jl:134 [inlined] #722 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/StructuralIdentifiability.jl:115 with_logstate at ./logging/logging.jl:524 with_logger at ./logging/logging.jl:635 [inlined] #assess_identifiability#721 at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/StructuralIdentifiability.jl:113 assess_identifiability at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/src/StructuralIdentifiability.jl:104 unknown function (ip: 0x72e9823c98f6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x72e9a1694082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:161 [inlined] macro expansion at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] macro expansion at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:159 [inlined] macro expansion at ./timing.jl:581 [inlined] top-level scope at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/runtests.jl:158 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_invoke at /source/src/gf.c:2955 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x72e9a1694082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72e9a2962249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ⌜ # Computing specializations.. Time: 0:00:14┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000072e995400010 Total snapshots: 1. Utilization: 100% ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x703e3a4e59a2) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x703e3a4ddf1d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x703e3a4d249a) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x703e3a4d219d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x703e3a4d1b8d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x703e3a4ce016) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x703e3b75b249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ✓ # Computing specializations.. Time: 0:00:18 ⌜ # Computing specializations.. Time: 0:00:00 ✓ # Computing specializations.. Time: 0:00:00 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000703e2e200010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:2011; test ╎ ╎ ╎ 1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1021; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [35] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/StructuralIdentifiability/Tp10P/test/identifiability.jl:1 _ZN4llvm8dyn_castINS_14SCEVAddRecExprEKNS_4SCEVEEEDcPT0_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution20SimplifyICmpOperandsERNS_7CmpInst9PredicateERPKNS_4SCEVES7_jb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution26isImpliedCondBalancedTypesENS_7CmpInst9PredicateEPKNS_4SCEVES5_S2_S5_S5_PKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution13isImpliedCondENS_7CmpInst9PredicateEPKNS_4SCEVES5_PKNS_5ValueEbPKNS_11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution27isLoopBackedgeGuardedByCondEPKNS_4LoopENS_7CmpInst9PredicateEPKNS_4SCEVES8_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution29proveNoSignedWrapViaInductionEPKNS_14SCEVAddRecExprE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution21getSignExtendExprImplEPKNS_4SCEVEPNS_4TypeEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm15ScalarEvolution17getSignExtendExprEPKNS_4SCEVEPNS_4TypeEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12SCEVExpander25getAddRecExprPHILiterallyEPKNS_14SCEVAddRecExprEPKNS_4LoopEPNS_4TypeES8_RS8_Rb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12SCEVExpander25expandAddRecExprLiterallyEPKNS_14SCEVAddRecExprE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12SCEVExpander6expandEPKNS_4SCEVE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12SCEVExpander17expandCodeForImplEPKNS_4SCEVEPNS_4TypeE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK12_GLOBAL__N_111LSRInstance6ExpandERKNS_6LSRUseERKNS_8LSRFixupERKNS_7FormulaEN4llvm14ilist_iteratorINSA_12ilist_detail12node_optionsINSA_11InstructionELb1ELb0EvEELb0ELb0EEERNSA_15SmallVectorImplINSA_14WeakTrackingVHEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) PkgEval terminated after 2746.03s: test duration exceeded the time limit