Package evaluation of Stheno on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T11:37:33.053 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.85s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.2 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.3s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 45.52s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_gfiV6w/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_gfiV6w/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.35 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.2 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.37+2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Documenter... 10372.3 ms ✓ Documenter 1 dependency successfully precompiled in 11 seconds. 26 already precompiled. Precompiling Zygote... 8829.0 ms ✓ ChainRules 5938.4 ms ✓ KernelAbstractions 4973.7 ms ✓ ForwardDiff 1450.6 ms ✓ KernelAbstractions → SparseArraysExt 1184.2 ms ✓ KernelAbstractions → LinearAlgebraExt 1302.3 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1396.4 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 12279.2 ms ✓ GPUArrays 51913.7 ms ✓ Zygote 9 dependencies successfully precompiled in 90 seconds. 94 already precompiled. Precompiling StructArraysStaticArraysExt... 1488.3 ms ✓ StructArrays → StructArraysStaticArraysExt 1 dependency successfully precompiled in 2 seconds. 19 already precompiled. Precompiling ZygoteDistancesExt... 6809.5 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 8 seconds. 107 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 26m46.4s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1619s / 99.2% 25.5GiB / 99.7% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 1104s 68.7% 1104s 17.6GiB 69.0% 17.6GiB addition 1 630s 39.2% 630s 10.8GiB 42.2% 10.8GiB Standardised Tests (correlated sum) 1 262s 16.3% 262s 6.01GiB 23.6% 6.01GiB adj_ad 9 15.0s 0.9% 1.67s 381MiB 1.5% 42.3MiB adj_fd 9 4.98s 0.3% 553ms 109MiB 0.4% 12.1MiB Correlated GPs 1 191s 11.9% 191s 247MiB 0.9% 247MiB Consistency Tests 1 71.8s 4.5% 71.8s 106MiB 0.4% 106MiB Standardised Tests (independent sum) 1 174s 10.8% 174s 4.46GiB 17.5% 4.46GiB adj_ad 9 23.7s 1.5% 2.63s 512MiB 2.0% 56.9MiB adj_fd 9 6.22s 0.4% 691ms 83.2MiB 0.3% 9.24MiB Verify mean / kernel numerically 1 3.24s 0.2% 3.24s 38.9MiB 0.1% 38.9MiB Consistency Tests 1 1.45s 0.1% 1.45s 14.3MiB 0.1% 14.3MiB product 1 236s 14.7% 236s 3.13GiB 12.3% 3.13GiB multiply by function 1 163s 10.2% 163s 1.75GiB 6.9% 1.75GiB Diff Tests 1 66.4s 4.1% 66.4s 1.28GiB 5.0% 1.28GiB adj_ad 9 22.4s 1.4% 2.49s 756MiB 2.9% 84.0MiB adj_fd 9 6.31s 0.4% 701ms 78.0MiB 0.3% 8.67MiB Consistency Tests 1 11.9s 0.7% 11.9s 86.3MiB 0.3% 86.3MiB multiply by constant 1 72.9s 4.5% 72.9s 1.38GiB 5.4% 1.38GiB Diff Tests 1 49.0s 3.0% 49.0s 1.32GiB 5.2% 1.32GiB adj_ad 9 13.5s 0.8% 1.50s 202MiB 0.8% 22.5MiB adj_fd 9 5.41s 0.3% 601ms 77.2MiB 0.3% 8.58MiB Consistency Tests 1 5.58s 0.3% 5.58s 21.3MiB 0.1% 21.3MiB GP mul errors 1 12.2ms 0.0% 12.2ms 36.3KiB 0.0% 36.3KiB compose 1 74.5s 4.6% 74.5s 1.76GiB 6.9% 1.76GiB general 1 50.6s 3.2% 50.6s 1.22GiB 4.8% 1.22GiB Diff Tests 1 43.3s 2.7% 43.3s 1.16GiB 4.6% 1.16GiB adj_ad 9 10.8s 0.7% 1.20s 566MiB 2.2% 62.9MiB adj_fd 9 5.34s 0.3% 594ms 85.5MiB 0.3% 9.50MiB Consistency Tests 1 5.54s 0.3% 5.54s 39.4MiB 0.2% 39.4MiB Stretch 1 15.4s 1.0% 15.4s 457MiB 1.8% 457MiB scalar stretch 1 14.8s 0.9% 14.8s 446MiB 1.7% 446MiB scalar input 1 13.4s 0.8% 13.4s 442MiB 1.7% 442MiB adj_fd 9 4.21s 0.3% 468ms 74.8MiB 0.3% 8.31MiB adj_ad 9 841ms 0.1% 93.5ms 31.0MiB 0.1% 3.45MiB vector input 1 1.32s 0.1% 1.32s 3.33MiB 0.0% 3.33MiB Vector stretch 1 518ms 0.0% 518ms 8.07MiB 0.0% 8.07MiB Matrix stretch 1 136ms 0.0% 136ms 2.85MiB 0.0% 2.85MiB Shift 1 5.53s 0.3% 5.53s 35.9MiB 0.1% 35.9MiB Shift{Vector{Float64}} 1 3.42s 0.2% 3.42s 12.7MiB 0.0% 12.7MiB Shift{Float64} 1 2.11s 0.1% 2.11s 23.2MiB 0.1% 23.2MiB Select 1 1.73s 0.1% 1.73s 29.6MiB 0.1% 29.6MiB evaluation 1 819ms 0.1% 819ms 18.5MiB 0.1% 18.5MiB idx isa Vector 1 496ms 0.0% 496ms 7.03MiB 0.0% 7.03MiB idx isa Integer 1 417ms 0.0% 417ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.20s 0.1% 1.20s 28.2MiB 0.1% 28.2MiB cross 1 29.6s 1.8% 29.6s 1.18GiB 4.6% 1.18GiB block arrays 1 17.2s 1.1% 17.2s 804MiB 3.1% 804MiB Stheno._collect ∘ _mortar 1 14.0s 0.9% 14.0s 671MiB 2.6% 671MiB BlockVector 1 8.18s 0.5% 8.18s 355MiB 1.4% 355MiB adj_ad 1 1.34s 0.1% 1.34s 82.2MiB 0.3% 82.2MiB adj_fd 1 661ms 0.0% 661ms 12.9MiB 0.0% 12.9MiB BlockMatrix 1 5.80s 0.4% 5.80s 316MiB 1.2% 316MiB adj_fd 1 769ms 0.0% 769ms 115MiB 0.4% 115MiB adj_ad 1 604ms 0.0% 604ms 33.3MiB 0.1% 33.3MiB fdm stuff 1 3.23s 0.2% 3.23s 133MiB 0.5% 133MiB Correctness tests 1 8.32s 0.5% 8.32s 356MiB 1.4% 356MiB Standardised Tests 1 4.05s 0.3% 4.05s 51.2MiB 0.2% 51.2MiB gp 1 230s 14.3% 230s 4.18GiB 16.4% 4.18GiB adj_ad 2 35.1s 2.2% 17.5s 739MiB 2.8% 370MiB sparse gp 1 24.3s 1.5% 24.3s 697MiB 2.7% 697MiB SparseFiniteGP inference 1 17.3s 1.1% 17.3s 521MiB 2.0% 521MiB SparseFiniteGP methods 1 6.41s 0.4% 6.41s 169MiB 0.6% 169MiB SparseFiniteGP Constructors 1 395ms 0.0% 395ms 3.72MiB 0.0% 3.72MiB gp 1 22.4s 1.4% 22.4s 236MiB 0.9% 236MiB GP 1 22.1s 1.4% 22.1s 234MiB 0.9% 234MiB independent GPs 1 309ms 0.0% 309ms 2.41MiB 0.0% 2.41MiB wrapped AbstractGP 1 13.2ms 0.0% 13.2ms 261KiB 0.0% 261KiB adj_fd 2 4.87s 0.3% 2.44s 93.7MiB 0.4% 46.9MiB derived_gp 1 135μs 0.0% 135μs 1.61KiB 0.0% 1.61KiB gaussian_process_probabilistic_programme 1 192s 12.0% 192s 2.10GiB 8.2% 2.10GiB External Consistency 1 49.9s 3.1% 49.9s 82.9MiB 0.3% 82.9MiB Zygote 1 34.8s 2.2% 34.8s 843MiB 3.2% 843MiB nested gppp 1 14.7s 0.9% 14.7s 82.0MiB 0.3% 82.0MiB split 1 665ms 0.0% 665ms 11.0MiB 0.0% 11.0MiB gppp macro 1 50.8ms 0.0% 50.8ms 514KiB 0.0% 514KiB doctests 1 70.9s 4.4% 70.9s 1.35GiB 5.3% 1.35GiB BlockData 1 9.30s 0.6% 9.30s 270MiB 1.0% 270MiB vcat(::GPPPInput...) 1 1.95s 0.1% 1.95s 88.8MiB 0.3% 88.8MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1742.23s PkgEval succeeded after 1823.48s