Package evaluation of StateSpaceDynamics on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T14:43:44.448 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 12.03s ################################################################################ # Installation # Installing StateSpaceDynamics... Resolving package versions... Installed DiffRules ──────────────── v1.15.1 Installed Rmath ──────────────────── v0.8.0 Installed StatsFuns ──────────────── v1.5.0 Installed IrrationalConstants ────── v0.2.4 Installed Adapt ──────────────────── v4.3.0 Installed HypergeometricFunctions ── v0.3.28 Installed Preferences ────────────── v1.4.3 Installed PtrArrays ──────────────── v1.3.0 Installed PositiveFactorizations ─── v0.2.4 Installed PDMats ─────────────────── v0.11.35 Installed DiffResults ────────────── v1.1.0 Installed ADTypes ────────────────── v1.15.0 Installed SpecialFunctions ───────── v2.5.1 Installed DataAPI ────────────────── v1.16.0 Installed Optim ──────────────────── v1.13.2 Installed Setfield ───────────────── v1.1.2 Installed ProgressMeter ──────────── v1.10.4 Installed JLLWrappers ────────────── v1.7.0 Installed StaticArraysCore ───────── v1.4.3 Installed NaNMath ────────────────── v1.1.3 Installed ConstructionBase ───────── v1.6.0 Installed PrecompileTools ────────── v1.2.1 Installed OrderedCollections ─────── v1.8.1 Installed StaticArrays ───────────── v1.9.13 Installed StateSpaceDynamics ─────── v0.1.1 Installed EnumX ──────────────────── v1.0.5 Installed NLSolversBase ──────────── v7.10.0 Installed ArrayInterface ─────────── v7.19.0 Installed Rmath_jll ──────────────── v0.5.1+0 Installed Reexport ───────────────── v1.2.2 Installed QuadGK ─────────────────── v2.11.2 Installed LineSearches ───────────── v7.4.0 Installed FillArrays ─────────────── v1.13.0 Installed ForwardDiff ────────────── v0.10.38 Installed Statistics ─────────────── v1.11.1 Installed CommonSubexpressions ───── v0.3.1 Installed AliasTables ────────────── v1.1.3 Installed LogExpFunctions ────────── v0.3.29 Installed StatsAPI ───────────────── v1.7.1 Installed MacroTools ─────────────── v0.5.16 Installed DataStructures ─────────── v0.18.22 Installed Requires ───────────────── v1.3.1 Installed UnPack ─────────────────── v1.0.2 Installed OpenSpecFun_jll ────────── v0.5.6+0 Installed Parameters ─────────────── v0.12.3 Installed Compat ─────────────────── v4.16.0 Installed SortingAlgorithms ──────── v1.2.1 Installed StatsBase ──────────────── v0.34.5 Installed Distributions ──────────── v0.25.120 Installed Missings ───────────────── v1.2.0 Installed DifferentiationInterface ─ v0.7.1 Installed FiniteDiff ─────────────── v2.27.0 Installed DocStringExtensions ────── v0.9.5 Installed ArrayLayouts ───────────── v1.11.1 Updating `~/.julia/environments/v1.11/Project.toml` [19cf8126] + StateSpaceDynamics v0.1.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [19cf8126] + StateSpaceDynamics v0.1.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building StateSpaceDynamics → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/0ec6b0fe096ace18afbae1bd8cfc34fe6bef7436/build.log` Installation completed after 11.63s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3351.4 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. Precompiling package dependencies... Precompilation completed after 588.38s ################################################################################ # Testing # Testing StateSpaceDynamics Status `/tmp/jl_QncUrx/Project.toml` [4c88cf16] Aqua v0.8.13 [336ed68f] CSV v0.10.15 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 ⌅ [f6369f11] ForwardDiff v0.10.38 [98e50ef6] JuliaFormatter v2.1.2 [23992714] MAT v0.10.7 [429524aa] Optim v1.13.2 [276daf66] SpecialFunctions v2.5.1 [19cf8126] StateSpaceDynamics v0.1.1 [4c63d2b9] StatsFuns v1.5.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_QncUrx/Manifest.toml` [47edcb42] ADTypes v1.15.0 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [944b1d66] CodecZlib v0.7.8 [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [460bff9d] ExceptionUnwrapping v0.1.11 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [4d8831e6] OpenSSL v1.5.0 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [777ac1f9] 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[8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Test Summary: | Pass Total Time Package Wide Tests | 11 11 45.7s Test Summary: | Pass Total Time SLDS Tests | 4062 4062 2m36.6s Fitting LDS via EM... 4%|██ | ETA: 0:00:03 (28.91 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:02 (20.48 ms/it) Fitting LDS via EM... 5%|██▌ | ETA: 0:00:02 (22.56 ms/it) Fitting LDS via EM... 9%|████▌ | ETA: 0:00:02 (24.30 ms/it) Fitting LDS via EM... 14%|███████ | ETA: 0:00:02 (23.64 ms/it) Fitting LDS via EM... 18%|█████████ | ETA: 0:00:02 (24.41 ms/it) Fitting LDS via EM... 23%|███████████▌ | ETA: 0:00:02 (24.08 ms/it) Fitting LDS via EM... 28%|██████████████ | ETA: 0:00:02 (24.32 ms/it) Fitting LDS via EM... 33%|████████████████▌ | ETA: 0:00:02 (24.30 ms/it) Fitting LDS via EM... 38%|███████████████████ | ETA: 0:00:02 (24.55 ms/it) Fitting LDS via EM... 43%|█████████████████████▌ | ETA: 0:00:01 (24.43 ms/it) Fitting LDS via EM... 48%|████████████████████████ | ETA: 0:00:01 (24.66 ms/it) Fitting LDS via EM... 53%|██████████████████████████▌ | ETA: 0:00:01 (24.52 ms/it) Fitting LDS via EM... 58%|█████████████████████████████ | ETA: 0:00:01 (24.56 ms/it) Fitting LDS via EM... 63%|███████████████████████████████▌ | ETA: 0:00:01 (24.33 ms/it) Fitting LDS via EM... 68%|██████████████████████████████████ | ETA: 0:00:01 (24.29 ms/it) Fitting LDS via EM... 73%|████████████████████████████████████▌ | ETA: 0:00:01 (24.22 ms/it) Fitting LDS via EM... 78%|███████████████████████████████████████ | ETA: 0:00:01 (24.28 ms/it) Fitting LDS via EM... 83%|█████████████████████████████████████████▌ | ETA: 0:00:00 (24.17 ms/it) Fitting LDS via EM... 87%|███████████████████████████████████████████▌ | ETA: 0:00:00 (24.28 ms/it) Fitting LDS via EM... 92%|██████████████████████████████████████████████ | ETA: 0:00:00 (24.21 ms/it) Fitting LDS via EM... 97%|████████████████████████████████████████████████▌ | ETA: 0:00:00 (24.29 ms/it) Fitting LDS via EM... 100%|██████████████████████████████████████████████████| Time: 0:00:02 (24.24 ms/it) Test Summary: | Pass Total Time GaussianLDS Tests | 66 66 2m39.9s WARNING: Method definition test_Gradient() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:78 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:68. WARNING: Method definition test_Hessian() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:94 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:84. WARNING: Method definition test_smooth() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:117 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:109. WARNING: Method definition test_initial_observation_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_initial_observation_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:158 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:161. WARNING: Method definition test_state_model_parameter_updates() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_state_model_parameter_updates(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:195 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:198. WARNING: Method definition test_EM() in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. WARNING: Method definition test_EM(Int64) in module Main at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/GaussianLDS.jl:285 overwritten at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:237. Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:18 ( 0.18 s/it) Fitting Poisson LDS via LaPlaceEM... 5%|██▌ | ETA: 0:00:09 (94.53 ms/it) Fitting Poisson LDS via LaPlaceEM... 8%|████ | ETA: 0:00:07 (77.96 ms/it) Fitting Poisson LDS via LaPlaceEM... 11%|█████▌ | ETA: 0:00:06 (66.57 ms/it) Fitting Poisson LDS via LaPlaceEM... 14%|███████ | ETA: 0:00:05 (61.79 ms/it) Fitting Poisson LDS via LaPlaceEM... 17%|████████▌ | ETA: 0:00:05 (57.05 ms/it) Fitting Poisson LDS via LaPlaceEM... 20%|██████████ | ETA: 0:00:04 (53.73 ms/it) Fitting Poisson LDS via LaPlaceEM... 23%|███████████▌ | ETA: 0:00:04 (52.32 ms/it) Fitting Poisson LDS via LaPlaceEM... 26%|█████████████ | ETA: 0:00:04 (50.50 ms/it) Fitting Poisson LDS via LaPlaceEM... 29%|██████████████▌ | ETA: 0:00:04 (49.48 ms/it) Fitting Poisson LDS via LaPlaceEM... 32%|████████████████ | ETA: 0:00:03 (48.20 ms/it) Fitting Poisson LDS via LaPlaceEM... 35%|█████████████████▌ | ETA: 0:00:03 (47.67 ms/it) Fitting Poisson LDS via LaPlaceEM... 38%|███████████████████ | ETA: 0:00:03 (47.02 ms/it) Fitting Poisson LDS via LaPlaceEM... 41%|████████████████████▌ | ETA: 0:00:03 (46.16 ms/it) Fitting Poisson LDS via LaPlaceEM... 44%|██████████████████████ | ETA: 0:00:03 (45.96 ms/it) Fitting Poisson LDS via LaPlaceEM... 47%|███████████████████████▌ | ETA: 0:00:02 (45.32 ms/it) Fitting Poisson LDS via LaPlaceEM... 50%|█████████████████████████ | ETA: 0:00:02 (45.18 ms/it) Fitting Poisson LDS via LaPlaceEM... 53%|██████████████████████████▌ | ETA: 0:00:02 (44.67 ms/it) Fitting Poisson LDS via LaPlaceEM... 56%|████████████████████████████ | ETA: 0:00:02 (44.53 ms/it) Fitting Poisson LDS via LaPlaceEM... 59%|█████████████████████████████▌ | ETA: 0:00:02 (44.00 ms/it) Fitting Poisson LDS via LaPlaceEM... 62%|███████████████████████████████ | ETA: 0:00:02 (43.90 ms/it) Fitting Poisson LDS via LaPlaceEM... 65%|████████████████████████████████▌ | ETA: 0:00:02 (43.55 ms/it) Fitting Poisson LDS via LaPlaceEM... 68%|██████████████████████████████████ | ETA: 0:00:01 (43.45 ms/it) Fitting Poisson LDS via LaPlaceEM... 71%|███████████████████████████████████▌ | ETA: 0:00:01 (43.09 ms/it) Fitting Poisson LDS via LaPlaceEM... 74%|█████████████████████████████████████ | ETA: 0:00:01 (42.78 ms/it) Fitting Poisson LDS via LaPlaceEM... 77%|██████████████████████████████████████▌ | ETA: 0:00:01 (42.74 ms/it) Fitting Poisson LDS via LaPlaceEM... 80%|████████████████████████████████████████ | ETA: 0:00:01 (42.51 ms/it) Fitting Poisson LDS via LaPlaceEM... 83%|█████████████████████████████████████████▌ | ETA: 0:00:01 (42.48 ms/it) Fitting Poisson LDS via LaPlaceEM... 86%|███████████████████████████████████████████ | ETA: 0:00:01 (42.23 ms/it) Fitting Poisson LDS via LaPlaceEM... 89%|████████████████████████████████████████████▌ | ETA: 0:00:00 (42.23 ms/it) Fitting Poisson LDS via LaPlaceEM... 92%|██████████████████████████████████████████████ | ETA: 0:00:00 (42.00 ms/it) Fitting Poisson LDS via LaPlaceEM... 95%|███████████████████████████████████████████████▌ | ETA: 0:00:00 (42.04 ms/it) Fitting Poisson LDS via LaPlaceEM... 98%|█████████████████████████████████████████████████ | ETA: 0:00:00 (41.86 ms/it) Fitting Poisson LDS via LaPlaceEM... 100%|██████████████████████████████████████████████████| Time: 0:00:04 (41.74 ms/it) Fitting Poisson LDS via LaPlaceEM... 2%|█ | ETA: 0:00:15 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 3%|█▌ | ETA: 0:00:15 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 4%|██ | ETA: 0:00:14 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 5%|██▌ | ETA: 0:00:15 ( 0.16 s/it) Fitting Poisson LDS via LaPlaceEM... 6%|███ | ETA: 0:00:14 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 7%|███▌ | ETA: 0:00:14 ( 0.15 s/it) Fitting Poisson LDS via LaPlaceEM... 8%|████ | ETA: 0:00:14 ( 0.16 s/it) Fitting Poisson LDS via LaPlaceEM... 9%|████▌ | ETA: 0:00:15 ( 0.16 s/it)┌ Warning: Terminated early due to NaN in gradient. └ @ Optim ~/.julia/packages/Optim/7krni/src/multivariate/optimize/optimize.jl:117 Fitting Poisson LDS via LaPlaceEM... 10%|█████ | ETA: 0:00:47 ( 0.52 s/it)EM Tests: Error During Test at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:90 Got exception outside of a @test ArgumentError: matrix contains Infs or NaNs Stacktrace: [1] chkfinite @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lapack.jl:105 [inlined] [2] getrf!(A::Matrix{Float64}, ipiv::Vector{Int64}; check::Bool) @ LinearAlgebra.LAPACK /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lapack.jl:582 [3] getrf! @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lapack.jl:580 [inlined] [4] getrf! @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lapack.jl:787 [inlined] [5] #lu!#182 @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:91 [inlined] [6] lu! @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:90 [inlined] [7] lu! @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:89 [inlined] [8] _lu @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:347 [inlined] [9] lu(::Adjoint{Float64, Matrix{Float64}}; kwargs::@Kwargs{}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:341 [10] lu @ /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/lu.jl:341 [inlined] [11] \(A::Adjoint{Float64, Matrix{Float64}}, B::Adjoint{Float64, Matrix{Float64}}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/generic.jl:1132 [12] /(A::Matrix{Float64}, B::Matrix{Float64}) @ LinearAlgebra /opt/julia/share/julia/stdlib/v1.11/LinearAlgebra/src/generic.jl:1164 [13] update_A!(lds::StateSpaceDynamics.LinearDynamicalSystem{StateSpaceDynamics.GaussianStateModel{Float64}, StateSpaceDynamics.PoissonObservationModel{Float64}}, E_zz::Array{Float64, 4}, E_zz_prev::Array{Float64, 4}) @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/LinearDynamicalSystems.jl:1088 [14] mstep!(plds::StateSpaceDynamics.LinearDynamicalSystem{StateSpaceDynamics.GaussianStateModel{Float64}, StateSpaceDynamics.PoissonObservationModel{Float64}}, E_z::Array{Float64, 3}, E_zz::Array{Float64, 4}, E_zz_prev::Array{Float64, 4}, p_smooth::Array{Float64, 4}, y::Array{Float64, 3}) @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/LinearDynamicalSystems.jl:2042 [15] fit!(lds::StateSpaceDynamics.LinearDynamicalSystem{StateSpaceDynamics.GaussianStateModel{Float64}, StateSpaceDynamics.PoissonObservationModel{Float64}}, y::Array{Float64, 3}; max_iter::Int64, tol::Float64) @ StateSpaceDynamics ~/.julia/packages/StateSpaceDynamics/zrsML/src/LinearDynamicalSystems.jl:1336 [16] fit! @ ~/.julia/packages/StateSpaceDynamics/zrsML/src/LinearDynamicalSystems.jl:1306 [inlined] [17] test_EM(n_trials::Int64) @ Main ~/.julia/packages/StateSpaceDynamics/zrsML/test/LinearDynamicalSystems/PoissonLDS.jl:243 [18] macro expansion @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:100 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [20] macro expansion @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:91 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [22] top-level scope @ ~/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:81 [23] include(fname::String) @ Main ./sysimg.jl:38 [24] top-level scope @ none:6 Test Summary: | Pass Error Total Time PoissonLDS Tests | 52 1 53 1m32.7s Constructor Tests | 32 32 2.6s Smoother Tests | 10 10 45.7s EM Tests | 10 1 11 44.4s ERROR: LoadError: Some tests did not pass: 52 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/StateSpaceDynamics/zrsML/test/runtests.jl:80 Testing failed after 480.14s ERROR: LoadError: Package StateSpaceDynamics errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1121.83s: package tests unexpectedly errored