Package evaluation of SpectralIndices on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T07:55:11.532 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.84s ################################################################################ # Installation # Installing SpectralIndices... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [df0093a1] + SpectralIndices v0.2.13 Updating `~/.julia/environments/v1.11/Manifest.toml` [34da2185] + Compat v4.16.0 [682c06a0] + JSON v0.21.4 [69de0a69] + Parsers v2.8.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [df0093a1] + SpectralIndices v0.2.13 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.6.0+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [83775a58] + Zlib_jll v1.2.13+1 [8e850ede] + nghttp2_jll v1.59.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.22s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: SpectralIndicesYAXArraysExt Failed to precompile SpectralIndicesYAXArraysExt [39118e20-fad3-577b-93ec-6bc0e3e7d91f] to "/home/pkgeval/.julia/compiled/v1.11/SpectralIndicesYAXArraysExt/jl_iz1uo7". ERROR: LoadError: UndefVarError: `ChunkType` not defined in `DiskArrays` Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:42 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:562 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:562 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [8] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.11/YAXArrays/jl_Qv8Xrd". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/ext/SpectralIndicesYAXArraysExt.jl:1 in expression starting at stdin:6 YAXArrays Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.11/YAXArrays/jl_5JxERI". ERROR: LoadError: UndefVarError: `ChunkType` not defined in `DiskArrays` Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:42 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:562 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:562 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [8] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 225.76s ################################################################################ # Testing # Testing SpectralIndices Status `/tmp/jl_LtdU3T/Project.toml` [4c88cf16] Aqua v0.8.13 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.16.0 [a93c6f00] DataFrames v1.7.0 ⌅ [0703355e] DimensionalData v0.28.5 ⌅ [c3a54625] JET v0.9.19 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v2.1.2 [1bc83da4] SafeTestsets v0.1.0 [df0093a1] SpectralIndices v0.2.13 [2913bbd2] StatsBase v0.34.5 ⌅ [c21b50f5] YAXArrays v0.5.14 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_LtdU3T/Manifest.toml` [47edcb42] ADTypes v1.15.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [13072b0f] AxisAlgorithms v1.1.0 ⌅ [179af706] CFTime v0.1.4 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.1 ⌅ [0703355e] DimensionalData v0.28.5 [fcd2136c] DiskArrayTools v0.1.12 [3c3547ce] DiskArrays v0.4.13 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [411431e0] Extents v0.1.6 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [f6369f11] ForwardDiff v1.0.1 [c27321d9] Glob v1.3.1 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.4 [85a1e053] Interfaces v0.3.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.19 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [aa1ae85d] JuliaInterpreter v0.9.46 ⌅ [70703baa] JuliaSyntax v0.4.10 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [d3d80556] LineSearches v7.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [6f1432cf] LoweredCodeUtils v3.2.2 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [a15396b6] OnlineStats v1.7.1 [925886fa] OnlineStatsBase v1.7.1 [429524aa] Optim v1.13.2 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [fad6cfc8] ParallelUtilities v0.8.6 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [1bc83da4] SafeTestsets v0.1.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [df0093a1] SpectralIndices v0.2.13 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3a884ed6] UnPack v1.0.2 [bbac0a1f] WeightedOnlineStats v0.6.3 [efce3f68] WoodburyMatrices v1.0.0 [90b8fcef] YAXArrayBase v0.7.6 ⌅ [c21b50f5] YAXArrays v0.5.14 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Quality Assurance | 6 6 46.4s Precompiling YAXArrays... 2029.9 ms ✓ ParallelUtilities 1277.7 ms ✓ YAXArrayBase 26024.0 ms ✓ DimensionalData 2161.1 ms ✓ OnlineStatsBase 3889.9 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 12750.8 ms ✓ Distributions 10333.6 ms ✓ Optim 2582.6 ms ✓ YAXArrayBase → DimensionalDataExt 3039.3 ms ✓ Distributions → DistributionsTestExt 3331.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 4744.6 ms ✓ OnlineStats 3169.8 ms ✓ WeightedOnlineStats Info Given YAXArrays was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `ChunkType` not defined in `DiskArrays` Stacktrace:  [1] getproperty(x::Module, f::Symbol)  @ Base ./Base.jl:42  [2] top-level scope  @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244  [3] include(mod::Module, _path::String)  @ Base ./Base.jl:562  [4] include(x::String)  @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1  [5] top-level scope  @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38  [6] include  @ ./Base.jl:562 [inlined]  [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2881  [8] top-level scope  @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin:6 ✗ YAXArrays 12 dependencies successfully precompiled in 84 seconds. 136 already precompiled. YAXArrays datasets: Error During Test at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:30 Got exception outside of a @test LoadError: The following 1 direct dependency failed to precompile: YAXArrays Failed to precompile YAXArrays [c21b50f5-aa40-41ea-b809-c0f5e47bfa5c] to "/home/pkgeval/.julia/compiled/v1.11/YAXArrays/jl_RPaEuH". ERROR: LoadError: UndefVarError: `ChunkType` not defined in `DiskArrays` Stacktrace: [1] getproperty(x::Module, f::Symbol) @ Base ./Base.jl:42 [2] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:244 [3] include(mod::Module, _path::String) @ Base ./Base.jl:562 [4] include(x::String) @ YAXArrays ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 [5] top-level scope @ ~/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:38 [6] include @ ./Base.jl:562 [inlined] [7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [8] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/Cubes/Cubes.jl:1 in expression starting at /home/pkgeval/.julia/packages/YAXArrays/ppMtD/src/YAXArrays.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/test/YAXArrays/datasets.jl:3 Test Summary: | Pass Error Total Time Utils | 13 1 14 1m41.4s General utils | 10 10 7.1s DataFrames datasets | 3 3 9.2s YAXArrays datasets | 1 1 1m25.1s ERROR: LoadError: Some tests did not pass: 13 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/SpectralIndices/dyBnp/test/runtests.jl:8 Testing failed after 157.64s ERROR: LoadError: Package SpectralIndices errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 408.32s: package fails to precompile