Package evaluation of PlotRNA on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T17:05:51.252


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 8.9s


################################################################################
# Installation
#

Installing PlotRNA...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [eab79ae3] + PlotRNA v0.3.2
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [67c07d97] + Automa v1.1.0
  [eeb925a3] + BioStockholm v0.2.1
  [fa961155] + CEnum v0.5.0
  [159f3aea] + Cairo v1.1.1
  [35d6a980] + ColorSchemes v3.29.0
  [3da002f7] + ColorTypes v0.12.1
  [c3611d14] + ColorVectorSpace v0.11.0
  [5ae59095] + Colors v0.13.1
  [34da2185] + Compat v4.16.0
  [864edb3b] + DataStructures v0.18.22
  [c87230d0] + FFMPEG v0.4.2
  [5789e2e9] + FileIO v1.17.0
  [53c48c17] + FixedPointNumbers v0.8.5
  [a2bd30eb] + Graphics v1.1.3
  [692b3bcd] + JLLWrappers v1.7.0
  [e5e0dc1b] + Juno v0.8.4
  [b964fa9f] + LaTeXStrings v1.4.0
⌅ [ae8d54c2] + Luxor v3.8.0
  [1914dd2f] + MacroTools v0.5.16
  [e89f7d12] + Media v0.5.0
  [77ba4419] + NaNMath v1.1.3
  [bac558e1] + OrderedCollections v1.8.1
  [eab79ae3] + PlotRNA v0.3.2
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [c4c386cf] + Rsvg v1.0.0
  [fdea26ae] + SIMD v3.7.1
  [10745b16] + Statistics v1.11.1
  [62fd8b95] + TensorCore v0.1.1
  [3bb67fe8] + TranscodingStreams v0.11.3
  [1986cc42] + Unitful v1.23.1
  [e17b2a0c] + UnsafePointers v1.0.0
  [05a721ad] + ViennaRNA v0.11.2
  [6e34b625] + Bzip2_jll v1.0.9+0
  [83423d85] + Cairo_jll v1.18.5+0
  [2e619515] + Expat_jll v2.6.5+0
⌅ [b22a6f82] + FFMPEG_jll v4.4.4+1
  [a3f928ae] + Fontconfig_jll v2.16.0+0
  [d7e528f0] + FreeType2_jll v2.13.4+0
  [559328eb] + FriBidi_jll v1.0.17+0
⌅ [1b77fbbe] + GSL_jll v2.7.2+0
  [b0724c58] + GettextRuntime_jll v0.22.4+0
  [7746bdde] + Glib_jll v2.84.3+0
  [3b182d85] + Graphite2_jll v1.3.15+0
  [2e76f6c2] + HarfBuzz_jll v8.5.1+0
  [aacddb02] + JpegTurbo_jll v3.1.1+0
  [c1c5ebd0] + LAME_jll v3.100.2+0
  [88015f11] + LERC_jll v4.0.1+0
  [1d63c593] + LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] + LZO_jll v2.10.3+0
  [e9f186c6] + Libffi_jll v3.4.7+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [4b2f31a3] + Libmount_jll v2.41.0+0
  [925c91fb] + Librsvg_jll v2.54.7+0
  [89763e89] + Libtiff_jll v4.7.1+0
  [38a345b3] + Libuuid_jll v2.41.0+0
  [079eb43e] + NLopt_jll v2.10.0+0
  [e7412a2a] + Ogg_jll v1.3.5+1
  [656ef2d0] + OpenBLAS32_jll v0.3.29+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [91d4177d] + Opus_jll v1.3.3+0
  [2f80f16e] + PCRE_jll v8.45.0+0
  [36c8627f] + Pango_jll v1.56.3+0
⌅ [30392449] + Pixman_jll v0.44.2+0
  [1e27f72a] + R2R_jll v1.0.6+0
  [b7a990de] + ViennaRNA_jll v2.6.4+0
⌅ [02c8fc9c] + XML2_jll v2.13.6+1
  [ffd25f8a] + XZ_jll v5.8.1+0
  [4f6342f7] + Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] + Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] + Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [da03df04] + gdk_pixbuf_jll v2.42.13+0
  [a4ae2306] + libaom_jll v3.11.0+0
  [0ac62f75] + libass_jll v0.15.2+0
  [f638f0a6] + libfdk_aac_jll v2.0.3+0
  [b53b4c65] + libpng_jll v1.6.49+0
  [f27f6e37] + libvorbis_jll v1.3.7+2
⌅ [1270edf5] + x264_jll v2021.5.5+0
⌅ [dfaa095f] + x265_jll v3.5.0+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9abbd945] + Profile v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [781609d7] + GMP_jll v6.3.0+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [3a97d323] + MPFR_jll v4.2.1+0
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [05823500] + OpenLibm_jll v0.8.5+0
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 6.18s


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# Precompilation
#

Precompiling PkgEval dependencies...

┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75
Precompiling package dependencies...

Precompilation completed after 1369.86s


################################################################################
# Testing
#

     Testing PlotRNA
┌ Warning: Could not use exact versions of packages in manifest, re-resolving
└ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924
      Status `/tmp/jl_oYzcNS/Project.toml`
⌅ [4c88cf16] Aqua v0.6.7
  [eeb925a3] BioStockholm v0.2.1
⌅ [13f3f980] CairoMakie v0.10.12
  [35d6a980] ColorSchemes v3.29.0
⌅ [ae8d54c2] Luxor v3.8.0
  [eab79ae3] PlotRNA v0.3.2
⌅ [aea7be01] PrecompileTools v1.2.1
  [ae029012] Requires v1.3.1
  [10745b16] Statistics v1.11.1
  [b8865327] UnicodePlots v3.8.0
  [05a721ad] ViennaRNA v0.11.2
  [1e27f72a] R2R_jll v1.0.6+0
  [4af54fe1] LazyArtifacts v1.11.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_oYzcNS/Manifest.toml`
  [47edcb42] ADTypes v1.15.0
  [621f4979] AbstractFFTs v1.5.0
  [398f06c4] AbstractLattices v0.3.1
  [1520ce14] AbstractTrees v0.4.5
  [79e6a3ab] Adapt v4.3.0
  [66dad0bd] AliasTables v1.1.3
  [27a7e980] Animations v0.4.2
⌅ [4c88cf16] Aqua v0.6.7
  [4fba245c] ArrayInterface v7.19.0
  [67c07d97] Automa v1.1.0
  [13072b0f] AxisAlgorithms v1.1.0
  [39de3d68] AxisArrays v0.4.7
  [18cc8868] BaseDirs v1.3.0
  [eeb925a3] BioStockholm v0.2.1
  [fa961155] CEnum v0.5.0
  [96374032] CRlibm v1.0.2
  [159f3aea] Cairo v1.1.1
⌅ [13f3f980] CairoMakie v0.10.12
  [d360d2e6] ChainRulesCore v1.25.2
  [a2cac450] ColorBrewer v0.4.1
  [35d6a980] ColorSchemes v3.29.0
⌅ [3da002f7] ColorTypes v0.11.5
⌃ [c3611d14] ColorVectorSpace v0.10.0
⌅ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.3
  [bbf7d656] CommonSubexpressions v0.3.1
  [34da2185] Compat v4.16.0
  [187b0558] ConstructionBase v1.6.0
  [d38c429a] Contour v0.6.3
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
⌅ [927a84f5] DelaunayTriangulation v0.8.12
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [a0c0ee7d] DifferentiationInterface v0.7.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.5
  [4e289a0a] EnumX v1.0.5
  [429591f6] ExactPredicates v2.2.8
  [411431e0] Extents v0.1.6
  [c87230d0] FFMPEG v0.4.2
  [7a1cc6ca] FFTW v1.9.0
  [5789e2e9] FileIO v1.17.0
  [1a297f60] FillArrays v1.13.0
  [6a86dc24] FiniteDiff v2.27.0
  [53c48c17] FixedPointNumbers v0.8.5
  [59287772] Formatting v0.4.3
  [f6369f11] ForwardDiff v1.0.1
  [b38be410] FreeType v4.1.1
  [663a7486] FreeTypeAbstraction v0.10.8
  [68eda718] GeoFormatTypes v0.4.4
  [cf35fbd7] GeoInterface v1.4.1
⌅ [5c1252a2] GeometryBasics v0.4.11
  [a2bd30eb] Graphics v1.1.3
⌅ [3955a311] GridLayoutBase v0.9.2
  [42e2da0e] Grisu v1.0.2
  [34004b35] HypergeometricFunctions v0.3.28
  [2803e5a7] ImageAxes v0.6.12
  [c817782e] ImageBase v0.1.7
  [a09fc81d] ImageCore v0.10.5
  [82e4d734] ImageIO v0.6.9
  [bc367c6b] ImageMetadata v0.9.10
  [9b13fd28] IndirectArrays v1.0.0
  [d25df0c9] Inflate v0.1.5
  [18e54dd8] IntegerMathUtils v0.1.2
⌅ [a98d9a8b] Interpolations v0.15.1
  [d1acc4aa] IntervalArithmetic v0.22.36
  [8197267c] IntervalSets v0.7.11
  [92d709cd] IrrationalConstants v0.2.4
  [f1662d9f] Isoband v0.1.1
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [682c06a0] JSON v0.21.4
  [b835a17e] JpegTurbo v0.1.6
  [e5e0dc1b] Juno v0.8.4
  [5ab0869b] KernelDensity v0.6.9
  [b964fa9f] LaTeXStrings v1.4.0
  [8cdb02fc] LazyModules v0.3.1
  [9c8b4983] LightXML v0.9.1
  [d3d80556] LineSearches v7.4.0
  [9b3f67b0] LinearAlgebraX v0.2.10
  [2ab3a3ac] LogExpFunctions v0.3.29
⌅ [ae8d54c2] Luxor v3.8.0
  [1914dd2f] MacroTools v0.5.16
⌅ [ee78f7c6] Makie v0.19.12
⌅ [20f20a25] MakieCore v0.6.9
  [dbb5928d] MappedArrays v0.4.2
  [299715c1] MarchingCubes v0.1.11
⌅ [0a4f8689] MathTeXEngine v0.5.7
  [e89f7d12] Media v0.5.0
  [e1d29d7a] Missings v1.2.0
  [7475f97c] Mods v2.2.6
  [e94cdb99] MosaicViews v0.3.4
  [3b2b4ff1] Multisets v0.4.5
  [d41bc354] NLSolversBase v7.10.0
  [77ba4419] NaNMath v1.1.3
  [f09324ee] Netpbm v1.1.1
  [510215fc] Observables v0.5.5
  [6fe1bfb0] OffsetArrays v1.17.0
  [52e1d378] OpenEXR v0.3.3
  [429524aa] Optim v1.13.2
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [f57f5aa1] PNGFiles v0.4.4
  [19eb6ba3] Packing v0.5.1
  [5432bcbf] PaddedViews v0.5.12
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.3
  [2ae35dd2] Permutations v0.4.23
  [3bbf5609] PikaParser v0.6.1
  [eebad327] PkgVersion v0.3.3
  [eab79ae3] PlotRNA v0.3.2
  [995b91a9] PlotUtils v1.4.3
  [647866c9] PolygonOps v0.1.2
⌃ [f27b6e38] Polynomials v4.0.21
  [85a6dd25] PositiveFactorizations v0.2.4
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [27ebfcd6] Primes v0.5.7
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [4b34888f] QOI v1.0.1
  [1fd47b50] QuadGK v2.11.2
  [b3c3ace0] RangeArrays v0.3.2
  [c84ed2f1] Ratios v0.4.5
  [3cdcf5f2] RecipesBase v1.3.4
  [189a3867] Reexport v1.2.2
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.1
  [286e9d63] RingLists v0.2.9
  [79098fc4] Rmath v0.8.0
  [5eaf0fd0] RoundingEmulator v0.2.1
  [c4c386cf] Rsvg v1.0.0
  [fdea26ae] SIMD v3.7.1
  [6c6a2e73] Scratch v1.3.0
  [efcf1570] Setfield v1.1.2
⌅ [65257c39] ShaderAbstractions v0.4.1
  [992d4aef] Showoff v1.0.3
  [73760f76] SignedDistanceFields v0.4.0
  [55797a34] SimpleGraphs v0.8.6
  [ec83eff0] SimplePartitions v0.3.3
  [cc47b68c] SimplePolynomials v0.2.18
  [a6525b86] SimpleRandom v0.3.2
  [699a6c99] SimpleTraits v0.9.4
  [45858cf5] Sixel v0.1.5
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
⌅ [c5dd0088] StableHashTraits v1.3.4
  [860ef19b] StableRNGs v1.0.3
  [cae243ae] StackViews v0.1.2
  [90137ffa] StaticArrays v1.9.13
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.1
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
⌅ [09ab397b] StructArrays v0.6.21
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [62fd8b95] TensorCore v0.1.1
  [731e570b] TiffImages v0.11.4
  [3bb67fe8] TranscodingStreams v0.11.3
  [981d1d27] TriplotBase v0.1.0
  [9d95972d] TupleTools v1.6.0
  [3a884ed6] UnPack v1.0.2
  [1cfade01] UnicodeFun v0.4.1
  [b8865327] UnicodePlots v3.8.0
  [1986cc42] Unitful v1.23.1
  [e17b2a0c] UnsafePointers v1.0.0
  [05a721ad] ViennaRNA v0.11.2
  [ecbed89c] WeakKeyIdDicts v0.1.0
  [e3aaa7dc] WebP v0.1.3
  [efce3f68] WoodburyMatrices v1.0.0
  [6e34b625] Bzip2_jll v1.0.9+0
  [4e9b3aee] CRlibm_jll v1.0.1+0
  [83423d85] Cairo_jll v1.18.5+0
  [5ae413db] EarCut_jll v2.2.4+0
  [2e619515] Expat_jll v2.6.5+0
⌅ [b22a6f82] FFMPEG_jll v4.4.4+1
  [f5851436] FFTW_jll v3.3.11+0
  [a3f928ae] Fontconfig_jll v2.16.0+0
  [d7e528f0] FreeType2_jll v2.13.4+0
  [559328eb] FriBidi_jll v1.0.17+0
⌅ [1b77fbbe] GSL_jll v2.7.2+0
  [b0724c58] GettextRuntime_jll v0.22.4+0
  [59f7168a] Giflib_jll v5.2.3+0
  [7746bdde] Glib_jll v2.84.3+0
  [3b182d85] Graphite2_jll v1.3.15+0
  [2e76f6c2] HarfBuzz_jll v8.5.1+0
  [905a6f67] Imath_jll v3.1.11+0
  [1d5cc7b8] IntelOpenMP_jll v2025.0.4+0
  [aacddb02] JpegTurbo_jll v3.1.1+0
  [c1c5ebd0] LAME_jll v3.100.2+0
  [88015f11] LERC_jll v4.0.1+0
  [1d63c593] LLVMOpenMP_jll v18.1.8+0
  [dd4b983a] LZO_jll v2.10.3+0
  [e9f186c6] Libffi_jll v3.4.7+0
  [7e76a0d4] Libglvnd_jll v1.7.1+1
  [94ce4f54] Libiconv_jll v1.18.0+0
  [4b2f31a3] Libmount_jll v2.41.0+0
  [925c91fb] Librsvg_jll v2.54.7+0
  [89763e89] Libtiff_jll v4.7.1+0
  [38a345b3] Libuuid_jll v2.41.0+0
  [856f044c] MKL_jll v2025.0.1+1
  [079eb43e] NLopt_jll v2.10.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
  [656ef2d0] OpenBLAS32_jll v0.3.29+0
  [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0
  [18a262bb] OpenEXR_jll v3.2.4+0
  [458c3c95] OpenSSL_jll v3.5.0+0
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [91d4177d] Opus_jll v1.3.3+0
  [2f80f16e] PCRE_jll v8.45.0+0
  [36c8627f] Pango_jll v1.56.3+0
⌅ [30392449] Pixman_jll v0.44.2+0
  [1e27f72a] R2R_jll v1.0.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [b7a990de] ViennaRNA_jll v2.6.4+0
⌅ [02c8fc9c] XML2_jll v2.13.6+1
  [ffd25f8a] XZ_jll v5.8.1+0
  [4f6342f7] Xorg_libX11_jll v1.8.12+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.13+0
  [a3789734] Xorg_libXdmcp_jll v1.1.6+0
  [1082639a] Xorg_libXext_jll v1.3.7+0
  [ea2f1a96] Xorg_libXrender_jll v0.9.12+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.1+0
  [c5fb5394] Xorg_xtrans_jll v1.6.0+0
  [3161d3a3] Zstd_jll v1.5.7+1
  [da03df04] gdk_pixbuf_jll v2.42.13+0
  [9a68df92] isoband_jll v0.2.3+0
  [a4ae2306] libaom_jll v3.11.0+0
  [0ac62f75] libass_jll v0.15.2+0
  [f638f0a6] libfdk_aac_jll v2.0.3+0
  [b53b4c65] libpng_jll v1.6.49+0
  [075b6546] libsixel_jll v1.10.5+0
  [f27f6e37] libvorbis_jll v1.3.7+2
  [c5f90fcd] libwebp_jll v1.5.0+0
  [1317d2d5] oneTBB_jll v2022.0.0+0
⌅ [1270edf5] x264_jll v2021.5.5+0
⌅ [dfaa095f] x265_jll v3.5.0+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [8bf52ea8] CRC32c v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [781609d7] GMP_jll v6.3.0+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [3a97d323] MPFR_jll v4.2.1+0
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.5+0
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading.
     Testing Running tests...
  testing PlotRNA
    testing Aqua.test_all
Skipping Base.active_repl
Skipping Base.active_repl_backend
Skipping Base.cwstring
    testing plot_structure
┌ Warning: Can't find java executable, skipping VARNA tests
└ @ Main ~/.julia/packages/PlotRNA/j5Vgx/test/runtests.jl:12
    testing R2R.run_r2r
R2R.run_r2r: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23
  Test threw exception
  Expression: R2R.run_r2r(msa) isa Tres
  non-zero exit code running r2r to generate out.sto
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] (::PlotRNA.R2R.var"#4#7"{String, Bool, Float64})(output_dir::String)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147
    [3] mktempdir(fn::PlotRNA.R2R.var"#4#7"{String, Bool, Float64}, parent::String; prefix::String)
      @ Base.Filesystem ./file.jl:819
    [4] mktempdir (repeats 2 times)
      @ ./file.jl:815 [inlined]
    [5] #3
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined]
    [6] mktemp(fn::PlotRNA.R2R.var"#3#6"{Bool, Float64, MSA{Char}}, parent::String)
      @ Base.Filesystem ./file.jl:790
    [7] mktemp
      @ ./file.jl:788 [inlined]
    [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134
    [9] run_r2r
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined]
   [10] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 [inlined]
   [11] macro expansion
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 [inlined]
   [12] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined]
   [13] top-level scope
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:20
R2R.run_r2r: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23
  Test threw exception
  Expression: R2R.run_r2r(msa) isa Tres
  non-zero exit code running r2r to generate out.sto
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] (::PlotRNA.R2R.var"#4#7"{String, Bool, Float64})(output_dir::String)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147
    [3] mktempdir(fn::PlotRNA.R2R.var"#4#7"{String, Bool, Float64}, parent::String; prefix::String)
      @ Base.Filesystem ./file.jl:819
    [4] mktempdir (repeats 2 times)
      @ ./file.jl:815 [inlined]
    [5] #3
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined]
    [6] mktemp(fn::PlotRNA.R2R.var"#3#6"{Bool, Float64, MSA{Char}}, parent::String)
      @ Base.Filesystem ./file.jl:790
    [7] mktemp
      @ ./file.jl:788 [inlined]
    [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134
    [9] run_r2r
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined]
   [10] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 [inlined]
   [11] macro expansion
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:23 [inlined]
   [12] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined]
   [13] top-level scope
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:20
    testing R2R.plot
R2R.plot: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31
  Test threw exception
  Expression: R2R.plot(msa) isa Tres
  non-zero exit code running r2r to generate out.sto
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] (::PlotRNA.R2R.var"#4#7"{String, Bool, Float64})(output_dir::String)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147
    [3] mktempdir(fn::PlotRNA.R2R.var"#4#7"{String, Bool, Float64}, parent::String; prefix::String)
      @ Base.Filesystem ./file.jl:819
    [4] mktempdir (repeats 2 times)
      @ ./file.jl:815 [inlined]
    [5] #3
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined]
    [6] mktemp(fn::PlotRNA.R2R.var"#3#6"{Bool, Float64, MSA{Char}}, parent::String)
      @ Base.Filesystem ./file.jl:790
    [7] mktemp
      @ ./file.jl:788 [inlined]
    [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134
    [9] run_r2r
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined]
   [10] plot(msa::MSA{Char}; kwargs::@Kwargs{})
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:109
   [11] plot
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:108 [inlined]
   [12] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 [inlined]
   [13] macro expansion
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 [inlined]
   [14] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined]
   [15] top-level scope
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:28
R2R.plot: Error During Test at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31
  Test threw exception
  Expression: R2R.plot(msa) isa Tres
  non-zero exit code running r2r to generate out.sto
  Stacktrace:
    [1] error(s::String)
      @ Base ./error.jl:35
    [2] (::PlotRNA.R2R.var"#4#7"{String, Bool, Float64})(output_dir::String)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:147
    [3] mktempdir(fn::PlotRNA.R2R.var"#4#7"{String, Bool, Float64}, parent::String; prefix::String)
      @ Base.Filesystem ./file.jl:819
    [4] mktempdir (repeats 2 times)
      @ ./file.jl:815 [inlined]
    [5] #3
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:136 [inlined]
    [6] mktemp(fn::PlotRNA.R2R.var"#3#6"{Bool, Float64, MSA{Char}}, parent::String)
      @ Base.Filesystem ./file.jl:790
    [7] mktemp
      @ ./file.jl:788 [inlined]
    [8] run_r2r(msa::MSA{Char}; GSC_weighted_consensus::Bool, identity_levels::Vector{Float64}, present_levels::Vector{Float64}, max_noncanon::Float64)
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:134
    [9] run_r2r
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:113 [inlined]
   [10] plot(msa::MSA{Char}; kwargs::@Kwargs{})
      @ PlotRNA.R2R ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:109
   [11] plot
      @ ~/.julia/packages/PlotRNA/j5Vgx/src/r2r.jl:108 [inlined]
   [12] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:677 [inlined]
   [13] macro expansion
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:31 [inlined]
   [14] macro expansion
      @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined]
   [15] top-level scope
      @ ~/.julia/packages/PlotRNA/j5Vgx/test/r2r.jl:28
Precompiling UnitfulExt...
   7152.1 ms  ✓ UnicodePlots → UnitfulExt
  1 dependency successfully precompiled in 8 seconds. 48 already precompiled.
    testing uniplot
Precompiling CairoMakie...
  42577.1 ms  ✓ Polynomials
   6086.7 ms  ✓ PNGFiles
  52845.6 ms  ✓ TiffImages
  10079.4 ms  ✓ JpegTurbo
   9439.1 ms  ✓ Sixel
   4630.5 ms  ✓ QOI
   4113.0 ms  ✓ OpenEXR
   5967.7 ms  ✓ ImageAxes
   5168.7 ms  ✓ FreeTypeAbstraction
   1273.1 ms  ✓ IntervalArithmetic → IntervalArithmeticDiffRulesExt
   7040.8 ms  ✓ ForwardDiff
  12374.9 ms  ✓ GridLayoutBase
   2739.0 ms  ✓ Packing
  14931.7 ms  ✓ ShaderAbstractions
   6661.7 ms  ✓ ExactPredicates
   7039.2 ms  ✓ WebP
   4719.0 ms  ✓ Distributions → DistributionsTestExt
   6484.1 ms  ✓ KernelDensity
   4443.4 ms  ✓ Polynomials → PolynomialsMakieCoreExt
   4395.7 ms  ✓ Polynomials → PolynomialsChainRulesCoreExt
   3980.3 ms  ✓ Polynomials → PolynomialsFFTWExt
   2997.0 ms  ✓ SimplePolynomials
   3333.4 ms  ✓ ImageMetadata
  29254.3 ms  ✓ MathTeXEngine
   2217.7 ms  ✓ ForwardDiff → ForwardDiffStaticArraysExt
   1844.4 ms  ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt
   1762.0 ms  ✓ IntervalArithmetic → IntervalArithmeticForwardDiffExt
   2919.3 ms  ✓ LinearAlgebraX
   6368.0 ms  ✓ Netpbm
   2392.7 ms  ✓ NLSolversBase
   4912.1 ms  ✓ LineSearches
   6605.6 ms  ✓ Optim
   7203.1 ms  ✓ SimpleGraphs
  12342.9 ms  ✓ DelaunayTriangulation
 279542.7 ms  ✓ Makie
Info Given CairoMakie was explicitly requested, output will be shown live 
WARNING: importing deprecated binding Makie.MakieLayout into CairoMakie.
The module `MakieLayout` has been removed and integrated into Makie, so simply replace all usage of `MakieLayout` with `Makie`.
WARNING: importing deprecated binding Makie._alternative_fonts into CairoMakie.
, use ALTERNATIVE_FONTS instead.
WARNING: importing deprecated binding Makie._current_figure into CairoMakie.
, use CURRENT_FIGURE instead.
WARNING: importing deprecated binding Makie._default_font into CairoMakie.
, use DEFAULT_FONT instead.
WARNING: importing deprecated binding Makie.default_palettes into CairoMakie.
, use DEFAULT_PALETTES instead.
WARNING: importing deprecated binding Makie.minimal_default into CairoMakie.
, use MAKIE_DEFAULT_THEME instead.
 154420.9 ms  ✓ CairoMakie
  36 dependencies successfully precompiled in 743 seconds. 279 already precompiled.
  1 dependency had output during precompilation:
┌ CairoMakie
│  [Output was shown above]
└  
Precompiling FreeTypeExt...
  11374.1 ms  ✓ UnicodePlots → FreeTypeExt
  1 dependency successfully precompiled in 12 seconds. 68 already precompiled.
Precompiling IntervalSetsExt...
   6073.5 ms  ✓ UnicodePlots → IntervalSetsExt
  1 dependency successfully precompiled in 7 seconds. 49 already precompiled.
Precompiling CairoMakieExt...
   3131.2 ms  ✓ Unitful → ForwardDiffExt
Info Given CairoMakieExt was explicitly requested, output will be shown live 

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 492 running 1 of 1

signal (10): User defined signal 1
egal_types at /source/src/builtins.c:151
egal_types at /source/src/builtins.c:162
ijl_types_equal at /source/src/subtype.c:2312
jl_specializations_get_linfo_ at /source/src/gf.c:222
jl_restore_system_image_from_stream_ at /source/src/staticdata.c:3469
jl_restore_package_image_from_stream at /source/src/staticdata.c:3670
ijl_restore_incremental at /source/src/staticdata.c:3742
#_include_from_serialized#1082 at ./loading.jl:1248
_include_from_serialized at ./loading.jl:1210 [inlined]
_include_from_serialized at ./loading.jl:1210 [inlined]
#_require_search_from_serialized#1105 at ./loading.jl:2041
_require_search_from_serialized at ./loading.jl:1969
jfptr__require_search_from_serialized_45080.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
_require at ./loading.jl:2527
__require_prelocked at ./loading.jl:2388
jfptr___require_prelocked_71357.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
jl_f__call_in_world at /source/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1089 [inlined]
invoke_in_world at ./essentials.jl:1086 [inlined]
_require_prelocked at ./loading.jl:2375
macro expansion at ./loading.jl:2314 [inlined]
macro expansion at ./lock.jl:273 [inlined]
__require at ./loading.jl:2271
jfptr___require_71288.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
jl_f__call_in_world at /source/src/builtins.c:894
#invoke_in_world#3 at ./essentials.jl:1089 [inlined]
invoke_in_world at ./essentials.jl:1086 [inlined]
require at ./loading.jl:2260
jfptr_require_71285.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
call_require at /source/src/toplevel.c:486 [inlined]
eval_import_path at /source/src/toplevel.c:523
eval_import_from at /source/src/toplevel.c:642 [inlined]
eval_import_from at /source/src/toplevel.c:633
jl_toplevel_eval_flex at /source/src/toplevel.c:749
eval_body at /source/src/interpreter.c:632
jl_interpret_toplevel_thunk at /source/src/interpreter.c:824
jl_toplevel_eval_flex at /source/src/toplevel.c:943
jl_eval_module_expr at /source/src/toplevel.c:215 [inlined]
jl_toplevel_eval_flex at /source/src/toplevel.c:743
jl_toplevel_eval_flex at /source/src/toplevel.c:886
ijl_toplevel_eval_in at /source/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2734
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
_include at ./loading.jl:2794
include at ./Base.jl:562 [inlined]
include_package_for_output at ./loading.jl:2881
jfptr_include_package_for_output_72252.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
do_call at /source/src/interpreter.c:126
eval_value at /source/src/interpreter.c:223
eval_stmt_value at /source/src/interpreter.c:174 [inlined]
eval_body at /source/src/interpreter.c:670
jl_interpret_toplevel_thunk at /source/src/interpreter.c:824
jl_toplevel_eval_flex at /source/src/toplevel.c:943
jl_toplevel_eval_flex at /source/src/toplevel.c:886
ijl_toplevel_eval_in at /source/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2734
include_string at ./loading.jl:2744 [inlined]
exec_options at ./client.jl:321
_start at ./client.jl:531
jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
true_main at /source/src/jlapi.c:900
jl_repl_entrypoint at /source/src/jlapi.c:1059
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x733da05d9249)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 270 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#818 at ./asyncevent.jl:311
jfptr_YY.818_67293.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x0000756838525f50 Total snapshots: 561. Utilization: 0%
   ╎561 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var…
   ╎ 561 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  561 @Base/condition.jl:125; wait
   ╎   561 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    561 @Base/task.jl:1021; wait()
560╎     561 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
wait at ./process.jl:694
wait at ./process.jl:687
unknown function (ip: 0x79c29a0f29d2)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146
#131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086
withenv at ./env.jl:265
#118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935
with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793
#116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902
#mktempdir#28 at ./file.jl:819
unknown function (ip: 0x79c29a0e054d)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
mktempdir at ./file.jl:815
mktempdir at ./file.jl:815 [inlined]
#sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined]
sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841
unknown function (ip: 0x79c29a0d4aca)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
#test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067
test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined]
#test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481
test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460
unknown function (ip: 0x79c29a0d47cd)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
#test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159
unknown function (ip: 0x79c29a0d41bd)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148
#test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined]
#test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined]
test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146
unknown function (ip: 0x79c29a0d0646)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
do_call at /source/src/interpreter.c:126
eval_value at /source/src/interpreter.c:223
eval_stmt_value at /source/src/interpreter.c:174 [inlined]
eval_body at /source/src/interpreter.c:670
eval_body at /source/src/interpreter.c:539
eval_body at /source/src/interpreter.c:539
jl_interpret_toplevel_thunk at /source/src/interpreter.c:824
jl_toplevel_eval_flex at /source/src/toplevel.c:943
jl_toplevel_eval_flex at /source/src/toplevel.c:886
ijl_toplevel_eval_in at /source/src/toplevel.c:994
eval at ./boot.jl:430 [inlined]
include_string at ./loading.jl:2734
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
_include at ./loading.jl:2794
include at ./Base.jl:562
jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
exec_options at ./client.jl:323
_start at ./client.jl:531
jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
true_main at /source/src/jlapi.c:900
jl_repl_entrypoint at /source/src/jlapi.c:1059
main at /source/cli/loader_exe.c:58
unknown function (ip: 0x79c29b128249)
__libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
unknown function (ip: 0x4010b8)
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x000079c28da00010 Total snapshots: 1. Utilization: 0%
 ╎1 @Base/client.jl:531; _start()
 ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions)
 ╎  1 @Base/Base.jl:562; include(mod::Module, _path::String)
 ╎   1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S…
 ╎    1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M…
 ╎     1 @Base/boot.jl:430; eval
 ╎    ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(…
 ╎    ╎  1 @Pkg/src/API.jl:146; #test#74
 ╎    ╎   1 @Pkg/src/API.jl:147; test
 ╎    ╎    1 @Pkg/src/API.jl:147; #test#75
 ╎    ╎     1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ…
 ╎    ╎    ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i…
 ╎    ╎    ╎  1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::…
 ╎    ╎    ╎   1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector…
 ╎    ╎    ╎    1 …/src/Operations.jl:2011; test
 ╎    ╎    ╎     1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::…
 ╎    ╎    ╎    ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::…
 ╎    ╎    ╎    ╎  1 …src/Operations.jl:1849; #sandbox#115
 ╎    ╎    ╎    ╎   1 @Base/file.jl:815; mktempdir
 ╎    ╎    ╎    ╎    1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin…
 ╎    ╎    ╎    ╎     1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11…
 ╎    ╎    ╎    ╎    ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"…
 ╎    ╎    ╎    ╎    ╎  1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio…
 ╎    ╎    ╎    ╎    ╎   1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123…
 ╎    ╎    ╎    ╎    ╎    1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131…
 ╎    ╎    ╎    ╎    ╎     1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13…
 ╎    ╎    ╎    ╎    ╎    ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,…
 ╎    ╎    ╎    ╎    ╎    ╎  1 …se/process.jl:687; wait(x::Base.Process)
 ╎    ╎    ╎    ╎    ╎    ╎   1 …se/process.jl:694; wait(x::Base.Process, syncd…
 ╎    ╎    ╎    ╎    ╎    ╎    1 …condition.jl:125; wait
 ╎    ╎    ╎    ╎    ╎    ╎     1 …condition.jl:130; wait(c::Base.GenericCondit…
 ╎    ╎    ╎    ╎    ╎    ╎    ╎ 1 …ase/task.jl:1021; wait()
 ╎    ╎    ╎    ╎    ╎    ╎    ╎  1 …ase/task.jl:1012; poptask(W::Base.Intrusiv…


[270] signal 15: Terminated
in expression starting at /home/pkgeval/.julia/packages/PlotRNA/j5Vgx/test/plot_structure_makie.jl:1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522

[1] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/evaluate.jl:210
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
poptask at ./task.jl:1012
wait at ./task.jl:1021
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#818 at ./asyncevent.jl:311
profile_printing_listener at ./Base.jl:582
#1190 at ./Base.jl:622
jfptr_YY.818_67293.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 53351315 (Pool: 53349806; Big: 1509); GC: 63
jfptr_YY.1190_76268.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1202
unknown function (ip: (nil))
Allocations: 23887223 (Pool: 23886434; Big: 789); GC: 30
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
error at ./error.jl:35
#schedule#763 at ./task.jl:884
schedule at ./task.jl:876 [inlined]
uv_writecb_task at ./stream.jl:1200
jfptr_uv_writecb_task_67144.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
val already in a list
atexit hook threw an error: ErrorException("schedule: Task not runnable")
jlcapi_uv_writecb_task_67607.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
error at ./error.jl:35
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
#schedule#763 at ./task.jl:884
poptask at ./task.jl:1012
schedule at ./task.jl:876 [inlined]
uv_writecb_task at ./stream.jl:1200
wait at ./task.jl:1021
jfptr_uv_writecb_task_67144.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv_write at ./stream.jl:1081
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
unsafe_write at ./stream.jl:1154
jlcapi_uv_writecb_task_67607.1 at /opt/julia/lib/julia/sys.so (unknown line)
uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926
uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227
uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824
uv_run at /workspace/srcdir/libuv/src/unix/core.c:420
ijl_task_get_next at /source/src/scheduler.c:522
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
poptask at ./task.jl:1012
jfptr_print_48490.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
showerror at ./errorshow.jl:152
unknown function (ip: 0x79c29a0f5046)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
wait at ./task.jl:1021
_atexit at ./initdefs.jl:454
uv_write at ./stream.jl:1081
jfptr__atexit_69651.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517
unsafe_write at ./stream.jl:1154
write at ./strings/io.jl:248 [inlined]
print at ./strings/io.jl:250
jfptr_print_48490.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
showerror at ./errorshow.jl:152
unknown function (ip: 0x75682a758026)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
_atexit at ./initdefs.jl:454
jfptr__atexit_69651.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2948 [inlined]
ijl_apply_generic at /source/src/gf.c:3125
jl_apply at /source/src/julia.h:2157 [inlined]
ijl_atexit_hook at /source/src/init.c:271
jl_exit_thread0_cb at /source/src/signals-unix.c:517

PkgEval terminated after 2740.02s: test duration exceeded the time limit