Package evaluation of Molly on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T16:35:41.334 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.62s ################################################################################ # Installation # Installing Molly... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [aa0f7f06] + Molly v0.22.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [a963bdd2] + AtomsBase v0.5.1 [a3e0e189] + AtomsCalculators v0.2.3 [47718e42] + BioGenerics v0.1.5 [de9282ab] + BioStructures v4.6.0 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [69e1c6dd] + CellListMap v0.9.10 [46823bd8] + Chemfiles v0.10.42 [ae650224] + ChunkSplitters v3.1.2 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [8f5d6c58] + EzXML v1.2.1 [1a297f60] + FillArrays v1.13.0 [1fa38f19] + Format v1.3.7 [0c68f7d7] + GPUArrays v11.2.3 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.0 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [63c18a36] + KernelAbstractions v0.9.35 [929cbde3] + LLVM v9.4.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [aa0f7f06] + Molly v0.22.2 [b8a86587] + NearestNeighbors v0.4.21 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [7b2266bf] + PeriodicTable v1.2.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [64031d72] + SimpleCrystals v0.4.4 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [1c621080] + TestItems v1.0.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 ⌅ [013be700] + UnsafeAtomics v0.2.1 [d80eeb9a] + UnsafeAtomicsLLVM v0.2.2 [78a364fa] + Chemfiles_jll v0.10.4+0 [dad2f222] + LLVMExtra_jll v0.0.37+2 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.49s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: GLMakie Failed to precompile GLMakie [e9467ef8-e4e7-5192-8a1a-b1aee30e663a] to "/home/pkgeval/.julia/compiled/v1.11/GLMakie/jl_0ccT1Q". ┌ Warning: GLFW couldn't create an OpenGL window. │ This likely means, you don't have an OpenGL capable Graphic Card, │ or you don't have an OpenGL 3.3 capable video driver installed. │ Have a look at the troubleshooting section in the GLMakie readme: │ https://github.com/MakieOrg/Makie.jl/tree/master/GLMakie#troubleshooting-opengl. └ @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:293 ERROR: LoadError: GLFWError (API_UNAVAILABLE): GLX: No GLXFBConfigs returned Stacktrace: [1] _ErrorCallbackWrapper(code::Int32, description::Cstring) @ GLFW ~/.julia/packages/GLFW/a10jC/src/callback.jl:46 [2] CreateWindow(width::Int64, height::Int64, title::String, monitor::GLFW.Monitor, share::GLFW.Window) @ GLFW ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:580 [3] GLFW.Window(; name::String, resolution::Tuple{Int64, Int64}, debugging::Bool, major::Int64, minor::Int64, windowhints::Vector{Tuple{UInt32, Integer}}, contexthints::Vector{Tuple{UInt32, Integer}}, visible::Bool, focus::Bool, fullscreen::Bool, monitor::Nothing, share::GLFW.Window) @ GLFW ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:404 [4] Window @ ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:362 [inlined] [5] empty_screen(debugging::Bool, reuse::Bool, window::Nothing) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:284 [6] empty_screen(debugging::Bool; reuse::Bool, window::Nothing) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:258 [7] singleton_screen(debugging::Bool) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:395 [8] macro expansion @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:20 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [10] macro expansion @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:17 [inlined] [11] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [12] top-level scope @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:15 [13] include(mod::Module, _path::String) @ Base ./Base.jl:562 [14] include(x::String) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:1 [15] top-level scope @ ~/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:103 [16] include @ ./Base.jl:562 [inlined] [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [18] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:14 in expression starting at /home/pkgeval/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:1 in expression starting at stdin:6 MollyGLMakieExt Failed to precompile MollyGLMakieExt [6556c0c0-e20d-5134-b211-15c1ed70d292] to "/home/pkgeval/.julia/compiled/v1.11/MollyGLMakieExt/jl_3iedY3". ┌ Warning: GLFW couldn't create an OpenGL window. │ This likely means, you don't have an OpenGL capable Graphic Card, │ or you don't have an OpenGL 3.3 capable video driver installed. │ Have a look at the troubleshooting section in the GLMakie readme: │ https://github.com/MakieOrg/Makie.jl/tree/master/GLMakie#troubleshooting-opengl. └ @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:293 ERROR: LoadError: GLFWError (API_UNAVAILABLE): GLX: No GLXFBConfigs returned Stacktrace: [1] _ErrorCallbackWrapper(code::Int32, description::Cstring) @ GLFW ~/.julia/packages/GLFW/a10jC/src/callback.jl:46 [2] CreateWindow(width::Int64, height::Int64, title::String, monitor::GLFW.Monitor, share::GLFW.Window) @ GLFW ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:580 [3] GLFW.Window(; name::String, resolution::Tuple{Int64, Int64}, debugging::Bool, major::Int64, minor::Int64, windowhints::Vector{Tuple{UInt32, Integer}}, contexthints::Vector{Tuple{UInt32, Integer}}, visible::Bool, focus::Bool, fullscreen::Bool, monitor::Nothing, share::GLFW.Window) @ GLFW ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:404 [4] Window @ ~/.julia/packages/GLFW/a10jC/src/glfw3.jl:362 [inlined] [5] empty_screen(debugging::Bool, reuse::Bool, window::Nothing) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:284 [6] empty_screen(debugging::Bool; reuse::Bool, window::Nothing) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:258 [7] singleton_screen(debugging::Bool) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/screen.jl:395 [8] macro expansion @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:20 [inlined] [9] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:78 [inlined] [10] macro expansion @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:17 [inlined] [11] macro expansion @ ~/.julia/packages/PrecompileTools/L8A3n/src/workloads.jl:140 [inlined] [12] top-level scope @ ~/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:15 [13] include(mod::Module, _path::String) @ Base ./Base.jl:562 [14] include(x::String) @ GLMakie ~/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:1 [15] top-level scope @ ~/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:103 [16] include @ ./Base.jl:562 [inlined] [17] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [18] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GLMakie/UTSQc/src/precompiles.jl:14 in expression starting at /home/pkgeval/.julia/packages/GLMakie/UTSQc/src/GLMakie.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GLMakie [e9467ef8-e4e7-5192-8a1a-b1aee30e663a] to "/home/pkgeval/.julia/compiled/v1.11/GLMakie/jl_kjEAuN". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Molly/uIKDb/ext/MollyGLMakieExt.jl:4 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 2555.65s ################################################################################ # Testing # Testing Molly Status `/tmp/jl_LMtFoi/Project.toml` ⌃ [21141c5a] AMDGPU v1.1.7 [4c88cf16] Aqua v0.8.13 [a963bdd2] AtomsBase v0.5.1 [ed7c10db] AtomsBaseTesting v0.4.0 [a3e0e189] AtomsCalculators v0.2.3 [de9282ab] BioStructures v4.6.0 [052768ef] CUDA v5.8.2 [46823bd8] Chemfiles v0.10.42 [8bb1440f] DelimitedFiles v1.9.1 [7da242da] Enzyme v0.13.52 [26cc04aa] FiniteDifferences v0.12.32 [e9467ef8] GLMakie v0.13.2 [0c68f7d7] GPUArrays v11.2.3 [5ab0869b] KernelDensity v0.6.9 [dde4c033] Metal v1.6.2 [aa0f7f06] Molly v0.22.2 [64031d72] SimpleCrystals v0.4.4 [10745b16] Statistics v1.11.1 [fd094767] Suppressor v0.2.8 [8f75cd03] oneAPI v2.0.3 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_LMtFoi/Manifest.toml` ⌃ [21141c5a] AMDGPU v1.1.7 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 ⌅ [6a4ca0a5] AcceleratedKernels v0.2.1 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.13 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 [a963bdd2] AtomsBase v0.5.1 [ed7c10db] AtomsBaseTesting v0.4.0 [a3e0e189] AtomsCalculators v0.2.3 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [18cc8868] BaseDirs v1.3.0 [47718e42] BioGenerics v0.1.5 [de9282ab] BioStructures v4.6.0 [3c28c6f8] BioSymbols v5.2.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [052768ef] CUDA v5.8.2 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [69e1c6dd] CellListMap v0.9.10 [d360d2e6] ChainRulesCore v1.25.2 [46823bd8] Chemfiles v0.10.42 [ae650224] ChunkSplitters v3.1.2 [fb6a15b2] CloseOpenIntervals v0.1.13 [523fee87] CodecBzip2 v0.8.5 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [95dc2771] ComputePipeline v0.1.1 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [7da242da] Enzyme v0.13.52 [f151be2c] EnzymeCore v0.8.12 [429591f6] ExactPredicates v2.2.8 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [8f5d6c58] EzXML v1.2.1 [7a1cc6ca] FFTW v1.9.0 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [f7f18e0c] GLFW v3.4.4 [e9467ef8] GLMakie v0.13.2 [0c68f7d7] GPUArrays v11.2.3 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.5.3 [096a3bc2] GPUToolbox v0.2.0 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [5c1252a2] GeometryBasics v0.5.9 [86223c79] Graphs v1.13.0 [3955a311] GridLayoutBase v0.11.1 [42e2da0e] Grisu v1.0.2 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.36 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [63c18a36] KernelAbstractions v0.9.35 [5ab0869b] KernelDensity v0.6.9 [929cbde3] LLVM v9.4.2 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] 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Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [d55e3150] LLD_jll v16.0.6+5 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8f36deef] libLLVM_jll v16.0.6+5 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling AMDGPU... 1755.7 ms ✓ BangBang 1207.8 ms ✓ ROCmDeviceLibs_jll 1346.4 ms ✓ LLVM_jll 1474.7 ms ✓ StaticArrayInterface → StaticArrayInterfaceStaticArraysExt 962.8 ms ✓ CloseOpenIntervals 1164.1 ms ✓ LayoutPointers 1766.7 ms ✓ BangBang → BangBangStaticArraysExt 1993.8 ms ✓ OhMyThreads 1147.4 ms ✓ BangBang → BangBangTablesExt 2031.2 ms ✓ StrideArraysCore 1709.6 ms ✓ Polyester 11653.4 ms ✓ AcceleratedKernels 42841.6 ms ✓ AMDGPU 13 dependencies successfully precompiled in 76 seconds. 116 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 527 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm18X86GenRegisterInfo23getRegClassPressureSetsEPKNS_19TargetRegisterClassE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x71274dd31c52) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x71274dd25fad) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x71274dd1a536) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x71274dd1a23d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x71274dd19c2d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x71274dd160b6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x71274efbb249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== [527] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Molly/uIKDb/test/runtests.jl:2 _ZN4llvm8ExpectedINS_8ArrayRefINS_6object13Elf_Shdr_ImplINS2_7ELFTypeILNS_7support10endiannessE1ELb1EEEEEEEED2Ev at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object7ELFFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE10getSectionEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm6object13ELFObjectFileINS0_7ELFTypeILNS_7support10endiannessE1ELb1EEEE16getSymbolAddressENS0_11DataRefImplE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) getAddress at /source/usr/include/llvm/Object/ObjectFile.h:408 [inlined] get_function_name_and_base at /source/src/debuginfo.cpp:751 [inlined] jl_dylib_DI_for_fptr at /source/src/debuginfo.cpp:1147 jl_getDylibFunctionInfo at /source/src/debuginfo.cpp:1179 [inlined] jl_getFunctionInfo_impl at /source/src/debuginfo.cpp:1274 ijl_lookup_code_address at /source/src/stackwalk.c:593 PkgEval terminated after 2723.32s: test duration exceeded the time limit