Package evaluation of LaplacianExpectationMaximization on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T15:24:49.185 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.94s ################################################################################ # Installation # Installing LaplacianExpectationMaximization... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [610349f3] + LaplacianExpectationMaximization v0.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [d360d2e6] + ChainRulesCore v1.25.2 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [b0b7db55] + ComponentArrays v0.15.28 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [5789e2e9] + FileIO v1.17.0 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [d9f16b24] + Functors v0.5.2 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [92d709cd] + IrrationalConstants v0.2.4 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [610349f3] + LaplacianExpectationMaximization v0.1.0 [d3d80556] + LineSearches v7.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.13.2 [3bd65402] + Optimisers v0.4.6 [65fa8838] + OptimizationCallbacks v0.1.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3bb67fe8] + TranscodingStreams v0.11.3 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1073.7s ################################################################################ # Testing # Testing LaplacianExpectationMaximization Status `/tmp/jl_NtPWfg/Project.toml` ⌃ [47edcb42] ADTypes v1.11.0 ⌃ [4c88cf16] Aqua v0.8.9 ⌃ [b0b7db55] ComponentArrays v0.15.19 [2569d6c7] ConcreteStructs v0.2.3 ⌃ [31c24e10] Distributions v0.25.113 ⌃ [7da242da] Enzyme v0.13.16 ⌃ [6a86dc24] FiniteDiff v2.26.2 ⌅ [f6369f11] ForwardDiff v0.10.38 ⌅ [c3a54625] JET v0.9.12 ⌃ [033835bb] JLD2 v0.5.10 [610349f3] LaplacianExpectationMaximization v0.1.0 ⌃ [2ab3a3ac] LogExpFunctions v0.3.28 ⌃ [76087f3c] NLopt v1.1.1 ⌃ [3bd65402] Optimisers v0.4.1 ⌃ [7f7a1694] Optimization v4.0.5 ⌃ [36348300] OptimizationOptimJL v0.4.1 [10745b16] Statistics v1.11.1 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NtPWfg/Manifest.toml` ⌃ [47edcb42] ADTypes v1.11.0 [1520ce14] AbstractTrees v0.4.5 ⌃ [7d9f7c33] Accessors v0.1.38 ⌃ [79e6a3ab] Adapt v4.1.1 [66dad0bd] AliasTables v1.1.3 ⌃ [4c88cf16] Aqua v0.8.9 ⌃ [4fba245c] ArrayInterface v7.17.1 [fa961155] CEnum v0.5.0 ⌃ [d360d2e6] ChainRulesCore v1.25.0 ⌃ [da1fd8a2] CodeTracking v1.3.6 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 ⌃ [b0b7db55] ComponentArrays v0.15.19 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [88cd18e8] ConsoleProgressMonitor v0.1.2 ⌃ [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 ⌃ [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.23 ⌃ [31c24e10] Distributions v0.25.113 ⌃ [ffbed154] DocStringExtensions v0.9.3 ⌃ [4e289a0a] EnumX v1.0.4 ⌃ [7da242da] Enzyme v0.13.16 ⌃ [f151be2c] EnzymeCore v0.8.6 [e2ba6199] ExprTools v0.1.10 ⌅ [6b7a57c9] Expronicon v0.8.5 [9aa1b823] FastClosures v0.3.2 ⌃ [5789e2e9] FileIO v1.16.6 [1a297f60] FillArrays v1.13.0 ⌃ [6a86dc24] FiniteDiff v2.26.2 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌃ [d9f16b24] Functors v0.5.1 [46192b85] GPUArraysCore v0.2.0 ⌅ [61eb1bfa] GPUCompiler v1.0.1 ⌃ [34004b35] HypergeometricFunctions v0.3.25 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 ⌃ [92d709cd] IrrationalConstants v0.2.2 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.12 ⌃ [033835bb] JLD2 v0.5.10 ⌃ [692b3bcd] JLLWrappers v1.6.1 ⌅ [aa1ae85d] JuliaInterpreter v0.9.38 [5be7bae1] LBFGSB v0.4.1 ⌃ [929cbde3] LLVM v9.1.3 [610349f3] LaplacianExpectationMaximization v0.1.0 [1d6d02ad] LeftChildRightSiblingTrees v0.2.0 ⌃ [d3d80556] LineSearches v7.3.0 ⌃ [2ab3a3ac] LogExpFunctions v0.3.28 [e6f89c97] LoggingExtras v1.1.0 ⌃ [6f1432cf] LoweredCodeUtils v3.1.0 [d8e11817] MLStyle v0.4.17 ⌃ [1914dd2f] MacroTools v0.5.13 [e1d29d7a] Missings v1.2.0 ⌃ [d41bc354] NLSolversBase v7.8.3 ⌃ [76087f3c] NLopt v1.1.1 ⌃ [77ba4419] NaNMath v1.0.2 ⌃ [d8793406] ObjectFile v0.4.2 ⌃ [429524aa] Optim v1.10.0 ⌃ [3bd65402] Optimisers v0.4.1 ⌃ [7f7a1694] Optimization v4.0.5 ⌃ [bca83a33] OptimizationBase v2.4.0 [65fa8838] OptimizationCallbacks v0.1.0 ⌃ [36348300] OptimizationOptimJL v0.4.1 ⌃ [bac558e1] OrderedCollections v1.6.3 ⌃ [90014a1f] PDMats v0.11.31 [d96e819e] Parameters v0.12.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 ⌃ [33c8b6b6] ProgressLogging v0.1.4 ⌃ [92933f4c] ProgressMeter v1.10.2 ⌃ [43287f4e] PtrArrays v1.2.1 ⌃ [1fd47b50] QuadGK v2.11.1 [3cdcf5f2] RecipesBase v1.3.4 ⌃ [731186ca] RecursiveArrayTools v3.27.4 [189a3867] Reexport v1.2.2 ⌃ [ae029012] Requires v1.3.0 [79098fc4] Rmath v0.8.0 ⌃ [7e49a35a] RuntimeGeneratedFunctions v0.5.13 ⌃ [0bca4576] SciMLBase v2.64.0 ⌅ [c0aeaf25] SciMLOperators v0.3.12 ⌃ [53ae85a6] SciMLStructures v1.6.1 ⌃ [6c6a2e73] Scratch v1.2.1 ⌃ [efcf1570] Setfield v1.1.1 [a2af1166] SortingAlgorithms v1.2.1 ⌃ [9f842d2f] SparseConnectivityTracer v0.6.9 ⌃ [0a514795] SparseMatrixColorings v0.4.10 ⌃ [276daf66] SpecialFunctions v2.4.0 ⌃ [aedffcd0] Static v1.1.1 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 ⌃ [82ae8749] StatsAPI v1.7.0 ⌃ [2913bbd2] StatsBase v0.34.3 ⌃ [4c63d2b9] StatsFuns v1.3.2 [53d494c1] StructIO v0.3.1 ⌃ [2efcf032] SymbolicIndexingInterface v0.3.35 [3783bdb8] TableTraits v1.0.1 ⌃ [bd369af6] Tables v1.12.0 [5d786b92] TerminalLoggers v0.1.7 ⌃ [a759f4b9] TimerOutputs v0.5.25 [3bb67fe8] TranscodingStreams v0.11.3 [3a884ed6] UnPack v1.0.2 ⌅ [7cc45869] Enzyme_jll v0.0.165+0 ⌅ [dad2f222] LLVMExtra_jll v0.0.34+0 [81d17ec3] L_BFGS_B_jll v3.0.1+0 ⌃ [079eb43e] NLopt_jll v2.8.0+0 ⌃ [efe28fd5] OpenSpecFun_jll v0.5.5+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling LaplacianExpectationMaximization... 3096.0 ms ✓ ADTypes 613.4 ms ✓ PtrArrays 1490.0 ms ✓ Functors 1137.8 ms ✓ FiniteDiff 1277.7 ms ✓ Rmath_jll 828.1 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 3310.9 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 4306.7 ms ✓ StaticArrayInterface 2302.7 ms ✓ QuadGK 4266.9 ms ✓ StatsBase 4352.6 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 2351.1 ms ✓ HypergeometricFunctions 52448.5 ms ✓ JLD2 971.6 ms ✓ ADTypes → ADTypesChainRulesCoreExt 741.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 865.6 ms ✓ AliasTables 4916.9 ms ✓ Optimisers 907.1 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 2104.9 ms ✓ NLSolversBase 1392.3 ms ✓ Rmath 2992.9 ms ✓ ComponentArrays 6515.8 ms ✓ OptimizationCallbacks 3881.0 ms ✓ LineSearches 2948.3 ms ✓ StatsFuns 2120.3 ms ✓ ComponentArrays → ComponentArraysOptimisersExt 15631.0 ms ✓ Optim 5015.2 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 12156.2 ms ✓ Distributions 4537.3 ms ✓ Distributions → DistributionsChainRulesCoreExt 93930.8 ms ✓ LaplacianExpectationMaximization 30 dependencies successfully precompiled in 247 seconds. 83 already precompiled. Precompiling Optimization... 1610.5 ms ✓ DifferentiationInterface 1495.6 ms ✓ Tables 791.6 ms ✓ SciMLStructures 7383.9 ms ✓ SparseConnectivityTracer 1767.4 ms ✓ SparseMatrixColorings 1113.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 4721.5 ms ✓ RecursiveArrayTools 2106.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseMatrixColoringsExt 2009.1 ms ✓ RecursiveArrayTools → RecursiveArrayToolsSparseArraysExt 27096.2 ms ✓ SciMLBase 5113.1 ms ✓ OptimizationBase 5255.5 ms ✓ Optimization 12 dependencies successfully precompiled in 61 seconds. 92 already precompiled. Precompiling StatsFunsInverseFunctionsExt... 1624.3 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 1 dependency successfully precompiled in 2 seconds. 40 already precompiled. Precompiling ComponentArraysRecursiveArrayToolsExt... 1957.5 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 1766.0 ms ✓ ComponentArrays → ComponentArraysRecursiveArrayToolsExt 2 dependencies successfully precompiled in 4 seconds. 80 already precompiled. Precompiling ComponentArraysSciMLBaseExt... 2769.4 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 2938.3 ms ✓ ComponentArrays → ComponentArraysSciMLBaseExt 2 dependencies successfully precompiled in 7 seconds. 97 already precompiled. Precompiling DifferentiationInterfaceForwardDiffExt... 1800.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 41 already precompiled. Precompiling DifferentiationInterfaceFiniteDiffExt... 3335.4 ms ✓ Setfield 840.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 2 dependencies successfully precompiled in 4 seconds. 16 already precompiled. Precompiling DifferentiationInterfaceChainRulesCoreExt... 746.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. Precompiling SparseConnectivityTracerSpecialFunctionsExt... 2034.5 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerLogExpFunctionsExt 3616.4 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerSpecialFunctionsExt 2 dependencies successfully precompiled in 6 seconds. 39 already precompiled. Precompiling SparseConnectivityTracerNaNMathExt... 3012.8 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerNaNMathExt 1 dependency successfully precompiled in 4 seconds. 18 already precompiled. Precompiling OptimizationFiniteDiffExt... 591.2 ms ✓ OptimizationBase → OptimizationFiniteDiffExt 1 dependency successfully precompiled in 1 seconds. 97 already precompiled. Precompiling OptimizationForwardDiffExt... 1219.1 ms ✓ OptimizationBase → OptimizationForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 110 already precompiled. Precompiling OptimizationExt... 8247.6 ms ✓ LaplacianExpectationMaximization → OptimizationExt 1 dependency successfully precompiled in 11 seconds. 173 already precompiled. Precompiling OptimizationOptimJL... 30141.1 ms ✓ OptimizationOptimJL 1 dependency successfully precompiled in 31 seconds. 137 already precompiled. Precompiling Enzyme... 1116.1 ms ✓ EnzymeCore 4657.3 ms ✓ ObjectFile 3767.5 ms ✓ Enzyme_jll 35656.7 ms ✓ GPUCompiler 295774.5 ms ✓ Enzyme 5 dependencies successfully precompiled in 341 seconds. 39 already precompiled. Precompiling ADTypesEnzymeCoreExt... 777.6 ms ✓ ADTypes → ADTypesEnzymeCoreExt 1 dependency successfully precompiled in 1 seconds. 2 already precompiled. Precompiling OptimisersEnzymeCoreExt... 880.5 ms ✓ Optimisers → OptimisersEnzymeCoreExt 1 dependency successfully precompiled in 1 seconds. 14 already precompiled. Precompiling AdaptExt... 789.3 ms ✓ EnzymeCore → AdaptExt 1 dependency successfully precompiled in 1 seconds. 4 already precompiled. Precompiling QuadGKEnzymeExt... 23315.2 ms ✓ QuadGK → QuadGKEnzymeExt 1 dependency successfully precompiled in 24 seconds. 49 already precompiled. Precompiling EnzymeExt... 23406.6 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 52334.3 ms ✓ Enzyme → EnzymeChainRulesCoreExt 23335.3 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 29225.3 ms ✓ LaplacianExpectationMaximization → EnzymeExt 4 dependencies successfully precompiled in 131 seconds. 130 already precompiled. Precompiling DifferentiationInterfaceEnzymeExt... 23450.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceEnzymeExt 1 dependency successfully precompiled in 24 seconds. 48 already precompiled. Precompiling OptimizationEnzymeExt... 52823.5 ms ✓ OptimizationBase → OptimizationEnzymeExt 1 dependency successfully precompiled in 54 seconds. 108 already precompiled. Precompiling DistributionsTestExt... 3701.2 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 5 seconds. 63 already precompiled. Test Summary: | Pass Total Time GaussianModel | 3 3 3.1s Test Summary: | Pass Total Time BiasedCoin | 3 3 1.9s Test Summary: | Pass Total Time HabituatingBiasedCoin | 3 3 0.5s Test Summary: | Pass Total Time MarkovChain | 1 1 4.0s Test Summary: | Pass Total Time HabituatingMarkovChain | 1 1 3.8s Test Summary: | Pass Total Time gradlogp & hesslogp | 14 14 3m26.2s Test Summary: | Pass Broken Total Time ForwardDiff & Enzyme | 1 1 2 3.3s Test Summary: | Pass Total Time NormalPrior | 1 1 1.3s Test Summary: | Pass Total Time copy_elements | 5 5 5.2s Test Summary: | Pass Total Time distribute_shared | 4 4 7.4s Test Summary: | Pass Total Time drop | 8 8 5.6s Test Summary: | Pass Total Time fix | 34 34 1m17.3s ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#22#23"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#24#25"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#40#41"{Vector{Bool}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#34#35"{Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}, Vector{Vector{Bool}}, PopulationModel{}}. │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store LaplacianExpectationMaximization.var"#66#67". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 ┌ Warning: Attempting to store OptimizationCallbacks.var"#2#4". │ JLD2 only stores functions by name. │ This may not be useful for anonymous functions. └ @ JLD2 ~/.julia/packages/JLD2/NKGUi/src/data/writing_datatypes.jl:447 eval | current | lowest | highest _________________________________________________ 2 | -1867.16 | -1867.16 | -1867.16 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 252 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm12DenseMapBaseINS_8DenseMapIPNS_10BasicBlockESt10unique_ptrINS_15DomTreeNodeBaseIS2_EESt14default_deleteIS6_EENS_12DenseMapInfoIS3_vEENS_6detail12DenseMapPairIS3_S9_EEEES3_S9_SB_SE_E4findEPKS2_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm17DominatorTreeBaseINS_10BasicBlockELb0EE7getNodeEPKS1_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZNK4llvm17DominatorTreeBaseINS_10BasicBlockELb0EE9dominatesEPKS1_S4_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass10findLeaderEPKNS_10BasicBlockEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass18processInstructionEPNS_11InstructionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass12processBlockEPNS_10BasicBlockE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass17iterateOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass7runImplERNS_8FunctionERNS_15AssumptionCacheERNS_13DominatorTreeERKNS_17TargetLibraryInfoERNS_9AAResultsEPNS_23MemoryDependenceResultsEPNS_8LoopInfoEPNS_25OptimizationRemarkEmitterEPNS_9MemorySSAE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm7GVNPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 jl_add_to_ee at /source/src/jitlayers.cpp:2285 jl_add_to_ee at /source/src/jitlayers.cpp:2285 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2536 [inlined] jl_compile_method_internal at /source/src/gf.c:2423 _jl_invoke at /source/src/gf.c:2940 [inlined] ijl_apply_generic at /source/src/gf.c:3125 read_scalar at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/io/dataio.jl:107 read_data at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/datasets.jl:96 read_data at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/datasets.jl:84 read_data at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/datasets.jl:67 [inlined] read_data at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/datasets.jl:67 [inlined] read_attr_data at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/attributes.jl:91 [inlined] jltype at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/data/reconstructing_datatypes.jl:101 load_datatypes at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/JLD2.jl:330 prewrite at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/JLD2.jl:344 [inlined] #write#131 at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/compression.jl:60 write at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/compression.jl:58 [inlined] write at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/compression.jl:58 [inlined] setindex! at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/groups.jl:103 [inlined] setindex! at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/JLD2.jl:350 [inlined] #10 at /home/pkgeval/.julia/packages/OptimizationCallbacks/4yegF/src/OptimizationCallbacks.jl:316 unknown function (ip: 0x78a195892a67) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #jldopen#97 at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/loadsave.jl:4 jldopen at /home/pkgeval/.julia/packages/JLD2/NKGUi/src/loadsave.jl:1 [inlined] CheckPointSaver at /home/pkgeval/.julia/packages/OptimizationCallbacks/4yegF/src/OptimizationCallbacks.jl:315 [inlined] Callback at /home/pkgeval/.julia/packages/OptimizationCallbacks/4yegF/src/OptimizationCallbacks.jl:77 unknown function (ip: 0x78a19586996d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 OptimizationTracker at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:33 SwapSign at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:298 #71 at /home/pkgeval/.julia/packages/NLSolversBase/kavn7/src/objective_types/incomplete.jl:55 unknown function (ip: 0x78a1959d7f76) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 value_gradient!! at /home/pkgeval/.julia/packages/NLSolversBase/kavn7/src/interface.jl:82 value_gradient! at /home/pkgeval/.julia/packages/NLSolversBase/kavn7/src/interface.jl:69 unknown function (ip: 0x78a1959bcc5a) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 value_gradient! at /home/pkgeval/.julia/packages/Optim/fBdaz/src/Manifolds.jl:50 ϕdϕ at /home/pkgeval/.julia/packages/LineSearches/jgnxK/src/LineSearches.jl:83 secant2! at /home/pkgeval/.julia/packages/LineSearches/jgnxK/src/hagerzhang.jl:375 HagerZhang at /home/pkgeval/.julia/packages/LineSearches/jgnxK/src/hagerzhang.jl:276 HagerZhang at /home/pkgeval/.julia/packages/LineSearches/jgnxK/src/hagerzhang.jl:102 [inlined] perform_linesearch! at /home/pkgeval/.julia/packages/Optim/fBdaz/src/utilities/perform_linesearch.jl:58 update_state! at /home/pkgeval/.julia/packages/Optim/fBdaz/src/multivariate/solvers/first_order/l_bfgs.jl:204 optimize at /home/pkgeval/.julia/packages/Optim/fBdaz/src/multivariate/optimize/optimize.jl:54 optimize at /home/pkgeval/.julia/packages/Optim/fBdaz/src/multivariate/optimize/optimize.jl:36 [inlined] #optimize#91 at /home/pkgeval/.julia/packages/Optim/fBdaz/src/multivariate/optimize/interface.jl:143 optimize at /home/pkgeval/.julia/packages/Optim/fBdaz/src/multivariate/optimize/interface.jl:139 [inlined] maximize at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:305 [inlined] maximize at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:370 maximize at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:508 unknown function (ip: 0x78a1959d280d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #maximize_logp#65 at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:463 maximize_logp at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:426 maximize_logp at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/src/fit.jl:426 unknown function (ip: 0x78a19598015d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x78a196f53372) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x78a1b3693082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x78a1b473a249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7f9cee4afa52) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7f9cee4a729d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x7f9cee49b826) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7f9cee49b52d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7f9cee49af1d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7f9cee4973a6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f9cef4e6249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007f9ce1e00010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:2011; test ╎ ╎ ╎ 1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1021; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [252] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/LaplacianExpectationMaximization/as2MD/test/fit.jl:121 _ZNK4llvm8CallBase12paramHasAttrEjNS_9Attribute8AttrKindE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm27getGuaranteedWellDefinedOpsEPKNS_11InstructionERNS_15SmallVectorImplIPKNS_5ValueEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13mustTriggerUBEPKNS_11InstructionERKNS_8SmallSetIPKNS_5ValueELj16ESt4lessIS6_EEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL31programUndefinedIfUndefOrPoisonPKN4llvm5ValueEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL32isGuaranteedNotToBeUndefOrPoisonPKN4llvm5ValueEPNS_15AssumptionCacheEPKNS_11InstructionEPKNS_13DominatorTreeEjb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL28computeKnownBitsFromOperatorPKN4llvm8OperatorERKNS_5APIntERNS_9KnownBitsEjRKN12_GLOBAL__N_15QueryE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) PkgEval terminated after 2722.9s: test duration exceeded the time limit