Package evaluation of GraphNeuralNetworks on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T21:48:14.085 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.77s ################################################################################ # Installation # Installing GraphNeuralNetworks... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [cffab07f] + GraphNeuralNetworks v1.0.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.1 [a963bdd2] + AtomsBase v0.5.1 [ab4f0b2a] + BFloat16s v0.5.1 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [d1d4a3ce] + BitFlags v0.1.9 [e1450e63] + BufferedStreams v1.2.2 [336ed68f] + CSV v0.10.15 [082447d4] + ChainRules v1.72.5 [d360d2e6] + ChainRulesCore v1.25.2 [46823bd8] + Chemfiles v0.10.42 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [f151be2c] + EnzymeCore v0.8.12 [460bff9d] + ExceptionUnwrapping v0.1.11 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [587475ba] + Flux v0.16.4 [f6369f11] + ForwardDiff v1.0.1 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.4.2 [a6a84749] + GNNlib v1.0.1 [46192b85] + GPUArraysCore v0.2.0 [92fee26a] + GZip v0.6.2 [c27321d9] + Glob v1.3.1 [cffab07f] + GraphNeuralNetworks v1.0.0 [86223c79] + Graphs v1.13.0 [f67ccb44] + HDF5 v0.17.2 [cd3eb016] + HTTP v1.10.17 [076d061b] + HashArrayMappedTries v0.2.0 [7869d1d1] + IRTools v0.4.15 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [4e3cecfd] + ImageShow v0.3.8 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.4 [7d512f48] + InternedStrings v0.7.0 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.15 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.35 [0b1a1467] + KrylovKit v0.9.5 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [23992714] + MAT v0.10.7 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.10.0 [eb30cadb] + MLDatasets v0.7.18 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [dbb5928d] + MappedArrays v0.4.2 [739be429] + MbedTLS v1.1.9 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [872c559c] + NNlib v0.9.30 [15e1cf62] + NPZ v0.4.3 [77ba4419] + NaNMath v1.1.3 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.21 [6fe1bfb0] + OffsetArrays v1.17.0 [0b1bfda6] + OneHotArrays v0.2.10 [4d8831e6] + OpenSSL v1.5.0 [3bd65402] + Optimisers v0.4.6 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [fbb45041] + Pickle v0.3.5 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [33c8b6b6] + ProgressLogging v0.1.5 [43287f4e] + PtrArrays v1.3.0 [c1ae055f] + RealDot v0.1.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.3.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.8 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [777ac1f9] + SimpleBufferStream v1.2.0 [699a6c99] + SimpleTraits v0.9.4 [a2af1166] + SortingAlgorithms v1.2.1 [dc90abb0] + SparseInverseSubset v0.1.2 [276daf66] + SpecialFunctions v2.5.1 [171d559e] + SplittablesBase v0.1.15 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 ⌅ [4db3bf67] + StridedViews v0.2.2 [69024149] + StringEncodings v0.3.7 [892a3eda] + StringManipulation v0.4.1 [09ab397b] + StructArrays v0.7.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [3bb67fe8] + TranscodingStreams v0.11.3 [28d57a85] + Transducers v0.4.84 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 [013be700] + UnsafeAtomics v0.3.0 [409d34a3] + VectorInterface v0.5.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [e88e6eb3] + Zygote v0.7.10 [700de1a5] + ZygoteRules v0.2.7 [78a364fa] + Chemfiles_jll v0.10.4+0 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.8+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.2s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 54.69s ################################################################################ # Testing # Testing GraphNeuralNetworks ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_StEXB9/Project.toml` [cdddcdb0] ChainRulesTestUtils v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [587475ba] Flux v0.16.4 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.0 [eb30cadb] MLDatasets v0.7.18 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.0 [e88e6eb3] Zygote v0.7.10 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_StEXB9/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.1 [a963bdd2] AtomsBase v0.5.1 [ab4f0b2a] BFloat16s v0.5.1 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [d1d4a3ce] BitFlags v0.1.9 [e1450e63] BufferedStreams v1.2.2 [336ed68f] CSV v0.10.15 [082447d4] ChainRules v1.72.5 [d360d2e6] ChainRulesCore v1.25.2 [cdddcdb0] ChainRulesTestUtils v1.13.0 [46823bd8] Chemfiles v0.10.42 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.12 [460bff9d] ExceptionUnwrapping v0.1.11 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [53c48c17] FixedPointNumbers v0.8.5 [587475ba] Flux v0.16.4 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.4.2 [a6a84749] GNNlib v1.0.1 ⌅ [46192b85] GPUArraysCore v0.1.6 [92fee26a] GZip v0.6.2 [c27321d9] Glob v1.3.1 [cffab07f] GraphNeuralNetworks v1.0.0 [86223c79] Graphs v1.13.0 [f67ccb44] HDF5 v0.17.2 [cd3eb016] HTTP v1.10.17 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.15 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [4e3cecfd] ImageShow v0.3.8 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.4 [7d512f48] InternedStrings v0.7.0 [3587e190] InverseFunctions v0.1.17 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.35 [0b1a1467] KrylovKit v0.9.5 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [23992714] MAT v0.10.7 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.10.0 [eb30cadb] MLDatasets v0.7.18 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [872c559c] NNlib v0.9.30 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.21 [6fe1bfb0] OffsetArrays v1.17.0 [0b1bfda6] OneHotArrays v0.2.10 [4d8831e6] OpenSSL v1.5.0 [3bd65402] Optimisers v0.4.6 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fbb45041] Pickle v0.3.5 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [33c8b6b6] ProgressLogging v0.1.5 [43287f4e] PtrArrays v1.3.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [7e506255] ScopedValues v1.3.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [777ac1f9] SimpleBufferStream v1.2.0 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [171d559e] SplittablesBase v0.1.15 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 ⌅ [4db3bf67] StridedViews v0.2.2 [69024149] StringEncodings v0.3.7 [892a3eda] StringManipulation v0.4.1 ⌃ [09ab397b] StructArrays v0.6.18 [856f2bd8] StructTypes v1.11.0 [fd094767] Suppressor v0.2.8 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.84 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.23.1 [a7773ee8] UnitfulAtomic v1.0.0 [013be700] UnsafeAtomics v0.3.0 [409d34a3] VectorInterface v0.5.0 [ea10d353] WeakRefStrings v1.4.2 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [78a364fa] Chemfiles_jll v0.10.4+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [7cb0a576] MPICH_jll v4.3.1+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [fe0851c0] OpenMPI_jll v5.0.8+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [477f73a3] libaec_jll v1.1.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling MLDatasets... 33811.2 ms ✓ ImageCore 5724.8 ms ✓ AtomsBase 4765.7 ms ✓ Pickle 83107.8 ms ✓ DataFrames 55373.5 ms ✓ JLD2 6365.8 ms ✓ DataDeps 4501.1 ms ✓ ImageBase 5841.8 ms ✓ Chemfiles 4891.5 ms ✓ BangBang → BangBangDataFramesExt 5127.5 ms ✓ Transducers → TransducersDataFramesExt 6182.1 ms ✓ ImageShow 25953.5 ms ✓ MLDatasets 12 dependencies successfully precompiled in 246 seconds. 191 already precompiled. layer = "GCNConv" 196.477851 seconds (82.42 M allocations: 4.050 GiB, 0.85% gc time, 99.65% compilation time) 279.423538 seconds (111.50 M allocations: 5.606 GiB, 0.96% gc time, 99.54% compilation time: <1% of which was recompilation) layer = "ResGatedGraphConv" 52.520165 seconds (25.63 M allocations: 2.934 GiB, 4.77% gc time, 86.64% compilation time) 63.060173 seconds (27.70 M allocations: 3.169 GiB, 4.09% gc time, 88.08% compilation time) layer = "GraphConv" 27.921422 seconds (10.84 M allocations: 3.992 GiB, 11.65% gc time, 53.67% compilation time) 35.129836 seconds (12.34 M allocations: 4.474 GiB, 9.44% gc time, 60.14% compilation time) layer = "SAGEConv" 19.314219 seconds (6.41 M allocations: 4.373 GiB, 16.24% gc time, 30.58% compilation time) 24.117483 seconds (7.67 M allocations: 4.898 GiB, 13.42% gc time, 39.99% compilation time) layer = "GATConv" 408.891036 seconds (32.60 M allocations: 2.857 GiB, 0.69% gc time, 98.61% compilation time) 480.168929 seconds (36.36 M allocations: 3.212 GiB, 0.62% gc time, 98.72% compilation time) layer = "GINConv" 28.884142 seconds (8.87 M allocations: 4.158 GiB, 15.34% gc time, 51.02% compilation time) 35.519948 seconds (10.93 M allocations: 4.689 GiB, 14.21% gc time, 55.72% compilation time) layer = "TransformerConv" 80.679218 seconds (39.14 M allocations: 4.347 GiB, 4.35% gc time, 87.62% compilation time) 123.190462 seconds (41.81 M allocations: 4.735 GiB, 3.03% gc time, 91.21% compilation time) Precompiling ChainRulesTestUtils... 14049.1 ms ✓ ChainRulesTestUtils 1 dependency successfully precompiled in 15 seconds. 25 already precompiled. ┌ Warning: inference tests have been disabled └ @ ChainRulesTestUtils ~/.julia/packages/ChainRulesTestUtils/Ko1Wr/src/global_config.jl:13 ┌ Warning: Layer with Float32 parameters got Float64 input. │ The input will be converted, but any earlier layers may be very slow. │ layer = Dense(4 => 2) # 10 parameters │ summary(x) = "4×3 Matrix{Float64}" └ @ Flux ~/.julia/packages/Flux/9PibT/src/layers/stateless.jl:60 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 143 running 1 of 1 signal (10): User defined signal 1 getindex at ./essentials.jl:916 [inlined] _fusedupdatebc at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:1029 [inlined] _fusedupdatebc_all at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:1036 [inlined] _broadcast_zeropres! at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:917 _diffshape_broadcast at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:221 _copy at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:1052 [inlined] copy at /source/usr/share/julia/stdlib/v1.11/SparseArrays/src/higherorderfns.jl:1167 [inlined] materialize at ./broadcast.jl:872 [inlined] broadcast at ./broadcast.jl:810 [inlined] * at /source/usr/share/julia/stdlib/v1.11/LinearAlgebra/src/diagonal.jl:442 unknown function (ip: 0x72d52816baee) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #normalized_adjacency#103 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:467 normalized_adjacency at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:456 [inlined] #normalized_laplacian#102 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:452 normalized_laplacian at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:450 [inlined] #scaled_laplacian#106 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:483 scaled_laplacian at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:482 [inlined] cheb_conv at /home/pkgeval/.julia/packages/GNNlib/StdFP/src/layers/conv.jl:87 ChebConv at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/conv.jl:178 [inlined] GConvLSTMCell at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:431 scan at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:4 GNNRecurrence at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:134 [inlined] GNNRecurrence at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:130 [inlined] #14 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:91 unknown function (ip: 0x72d527b98e5d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #11 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 #92 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 #75 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:20 #11 at ./broadcast.jl:353 [inlined] macro expansion at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:135 [inlined] __broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:123 [inlined] _broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:119 [inlined] copy at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:60 [inlined] materialize at ./broadcast.jl:872 [inlined] _eval_function at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:249 _estimate_magnitudes at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:378 estimate_step at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:365 AdaptedFiniteDifferenceMethod at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:193 #74 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:16 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:849 collect_to_with_first! at ./array.jl:827 unknown function (ip: 0x72d527b9c445) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _collect at ./array.jl:821 collect_similar at ./array.jl:720 [inlined] map at ./abstractarray.jl:3371 [inlined] #jacobian#73 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:15 unknown function (ip: 0x72d527b9b3ee) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jacobian at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:9 _j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:84 j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 [inlined] grad at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:94 unknown function (ip: 0x72d529bf43ed) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 finitediff_withgradient at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:64 unknown function (ip: 0x72d529bf1a16) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test_gradients#6 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:142 test_gradients at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:82 unknown function (ip: 0x72d5280b7b02) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 include_string at ./loading.jl:2744 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x72d53d2efa96) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x72d53d2ef1ae) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x72d545500082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:296 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72d5467d8249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x739079703cd2) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7390796f100d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x7390796e5596) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7390796e529d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7390796e4c8d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7390796e1116) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73907a96c249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000073906d400010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:2011; test ╎ ╎ ╎ 1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1021; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 [143] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/layers/temporalconv.jl:82 typeenv_has_ne at /source/src/jltypes.c:45 [inlined] jl_has_bound_typevars at /source/src/jltypes.c:224 has_exists_typevar at /source/src/subtype.c:1602 local_forall_exists_subtype at /source/src/subtype.c:1618 wait at ./task.jl:1021 forall_exists_equal at /source/src/subtype.c:1765 subtype at /source/src/subtype.c:1543 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1500 local_forall_exists_subtype at /source/src/subtype.c:1658 subtype_ccheck at /source/src/subtype.c:698 #wait#733 at ./condition.jl:130 equal_var at /source/src/subtype.c:1707 forall_exists_equal at /source/src/subtype.c:1757 subtype at /source/src/subtype.c:1543 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1500 subtype_tuple_tail at /source/src/subtype.c:1295 [inlined] subtype_tuple at /source/src/subtype.c:1374 [inlined] subtype at /source/src/subtype.c:1537 subtype_unionall at /source/src/subtype.c:965 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 subtype at /source/src/subtype.c:1500 exists_subtype at /source/src/subtype.c:1780 [inlined] forall_exists_subtype at /source/src/subtype.c:1809 ijl_subtype_env at /source/src/subtype.c:2268 jl_type_intersection_env_s at /source/src/subtype.c:4569 jl_f__compute_sparams at /source/src/builtins.c:2043 eltype at ./abstractarray.jl:242 [inlined] eltype at ./abstractarray.jl:241 [inlined] #to_sparse#333 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/convert.jl:233 to_sparse at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/convert.jl:221 [inlined] #adjacency_matrix#82 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:227 adjacency_matrix at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:220 [inlined] #normalized_adjacency#103 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:458 normalized_adjacency at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:456 [inlined] #normalized_laplacian#102 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:452 normalized_laplacian at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:450 [inlined] #scaled_laplacian#106 at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:483 scaled_laplacian at /home/pkgeval/.julia/packages/GNNGraphs/Ldvz4/src/query.jl:482 [inlined] cheb_conv at /home/pkgeval/.julia/packages/GNNlib/StdFP/src/layers/conv.jl:87 ChebConv at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/conv.jl:178 [inlined] profile_printing_listener at ./Base.jl:582 GConvLSTMCell at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:428 scan at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:4 GNNRecurrence at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/src/layers/temporalconv.jl:134 unknown function (ip: 0x72d527bb1dae) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #14 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:91 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #8 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:120 #94 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:80 [inlined] #92 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 #75 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:20 #11 at ./broadcast.jl:353 [inlined] macro expansion at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:135 [inlined] __broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:123 [inlined] _broadcast at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:119 [inlined] copy at /home/pkgeval/.julia/packages/StaticArrays/LSPcF/src/broadcast.jl:60 [inlined] materialize at ./broadcast.jl:872 [inlined] _eval_function at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:249 AdaptedFiniteDifferenceMethod at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:240 unknown function (ip: 0x72d527bb4f35) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 AdaptedFiniteDifferenceMethod at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/methods.jl:194 #74 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:16 [inlined] iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:849 collect_to_with_first! at ./array.jl:827 unknown function (ip: 0x72d527bb5845) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _collect at ./array.jl:821 collect_similar at ./array.jl:720 [inlined] map at ./abstractarray.jl:3371 [inlined] #jacobian#73 at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:15 unknown function (ip: 0x72d527bb4ace) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jacobian at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:9 _j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:84 j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:77 unknown function (ip: 0x72d527bb2975) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 j′vp at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:80 unknown function (ip: 0x72d527bb1fc9) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 grad at /home/pkgeval/.julia/packages/FiniteDifferences/IPGFN/src/grad.jl:94 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 finitediff_withgradient at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:64 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #1190 at ./Base.jl:622 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #test_gradients#6 at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:120 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 test_gradients at /home/pkgeval/.julia/packages/GraphNeuralNetworks/nauyk/test/test_module.jl:82 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 jfptr_YY.1190_76268.1 at /opt/julia/lib/julia/sys.so (unknown line) ijl_toplevel_eval_in at /source/src/toplevel.c:994 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 20122375 (Pool: 20119300; Big: 3075); GC: 22 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 include_string at ./loading.jl:2744 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 #invokelatest#2 at ./essentials.jl:1055 [inlined] invokelatest at ./essentials.jl:1052 [inlined] #8 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:118 [inlined] withpath at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/vendored_code.jl:7 #7 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:117 [inlined] cd at ./file.jl:112 unknown function (ip: 0x72d53d2efa96) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 run_testitem at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:116 unknown function (ip: 0x72d53d2ef1ae) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #run_tests#13 at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:221 run_tests at /home/pkgeval/.julia/packages/TestItemRunner/Q6zqe/src/TestItemRunner.jl:133 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 error at ./error.jl:35 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 #schedule#763 at ./task.jl:884 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 _include at ./loading.jl:2794 include at ./sysimg.jl:38 unknown function (ip: 0x72d545500082) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jfptr_uv_writecb_task_67144.1 at /opt/julia/lib/julia/sys.so (unknown line) jl_toplevel_eval_flex at /source/src/toplevel.c:943 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 jlcapi_uv_writecb_task_67607.1 at /opt/julia/lib/julia/sys.so (unknown line) eval at ./boot.jl:430 [inlined] uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 exec_options at ./client.jl:296 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 _start at ./client.jl:531 poptask at ./task.jl:1012 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) wait at ./task.jl:1021 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x72d5467d8249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) Allocations: 728126476 (Pool: 728113037; Big: 13439); GC: 543 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48490.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 showerror at ./errorshow.jl:152 unknown function (ip: 0x739079706346) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _atexit at ./initdefs.jl:454 jfptr__atexit_69651.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2723.14s: test duration exceeded the time limit