Package evaluation of CrystalNets on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T10:09:30.624 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.16s ################################################################################ # Installation # Installing CrystalNets... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [7952bbbe] + CrystalNets v1.0.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [c7e460c6] + ArgParse v1.2.0 [ec485272] + ArnoldiMethod v0.4.0 [a963bdd2] + AtomsBase v0.5.1 [46823bd8] + Chemfiles v0.10.42 [34da2185] + Compat v4.16.0 [7952bbbe] + CrystalNets v1.0.2 [864edb3b] + DataStructures v0.18.22 [ffbed154] + DocStringExtensions v0.9.5 [86223c79] + Graphs v1.13.0 [d25df0c9] + Inflate v0.1.5 [692b3bcd] + JLLWrappers v1.7.0 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [f305370e] + PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] + PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] + PeriodicGraphs v0.10.3 [7b2266bf] + PeriodicTable v1.2.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [92933f4c] + ProgressMeter v1.10.4 [ae029012] + Requires v1.3.1 [699a6c99] + SimpleTraits v0.9.4 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [b718987f] + TextWrap v1.0.2 [0796e94c] + Tokenize v0.5.29 [1986cc42] + Unitful v1.23.1 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [ac4a9f1e] + spglib_jll v2.4.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 4.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 379.14s ################################################################################ # Testing # Testing CrystalNets Status `/tmp/jl_NepWlE/Project.toml` [861a8166] Combinatorics v1.0.3 [7952bbbe] CrystalNets v1.0.2 [86223c79] Graphs v1.13.0 [18c5b727] PeriodicGraphs v0.10.3 [90137ffa] StaticArrays v1.9.13 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_NepWlE/Manifest.toml` [c7e460c6] ArgParse v1.2.0 [ec485272] ArnoldiMethod v0.4.0 [a963bdd2] AtomsBase v0.5.1 [46823bd8] Chemfiles v0.10.42 [861a8166] Combinatorics v1.0.3 [34da2185] Compat v4.16.0 [7952bbbe] CrystalNets v1.0.2 [864edb3b] DataStructures v0.18.22 [ffbed154] DocStringExtensions v0.9.5 [86223c79] Graphs v1.13.0 [d25df0c9] Inflate v0.1.5 [692b3bcd] JLLWrappers v1.7.0 [1914dd2f] MacroTools v0.5.16 [bac558e1] OrderedCollections v1.8.1 [f305370e] PeriodicGraphEmbeddings v0.3.3 [72a2d4b8] PeriodicGraphEquilibriumPlacement v0.2.2 [18c5b727] PeriodicGraphs v0.10.3 [7b2266bf] PeriodicTable v1.2.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [92933f4c] ProgressMeter v1.10.4 [ae029012] Requires v1.3.1 [699a6c99] SimpleTraits v0.9.4 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [b718987f] TextWrap v1.0.2 [0796e94c] Tokenize v0.5.29 [1986cc42] Unitful v1.23.1 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [ac4a9f1e] spglib_jll v2.4.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... The following warning about altering performance, the two messages on warning toggling and the three error statements are expected. [ Warning: Warnings may critically alter performance for this operation and were turned off. [ Info: Use CrystalNets.toggle_warning(false) or the --no-warn option to remove this warning [ Info: Use the force_warn option to force printing warnings [ Error: Very suspicious connectivity found for MIL-100. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-101. This invalidates all bonds from the file, which will thus be discarded. [ Error: Atom ?, used in a bond, has either zero or multiple placements in CIF file MIL-53. This invalidates all bonds from the file, which will thus be discarded. The following warning about symmetry and the three warnings about 0-dimensional structures are expected. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Detected 192 structures of dimension 0 in NOTT-112, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 40 structures of dimension 0 in FOWWAR, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Detected 2 structures of dimension 0 in CALFIG, possibly complex solvent residues. They will be ignored for topology computation. The following @error about carbon cycle disorder is expected. [ Info: Initial pass found C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for CIZPOS: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: This CIF file contains multiple colliding atoms. Only one atom will be kept per site. [ Warning: Cu atoms suspiciously close to one another(bond length: 0.5503737600000008). One will be removed. [ Info: Initial pass found N, O and C with invalid number of bonds. [ Error: Found what looks like a disordered carbon ring for c8ce00653a2: use of disordered input is not advised, please double-check the detected topology or provide a clean input. [ Warning: Detected 5 structures of dimension 0 in c8ce00653a2, possibly complex solvent residues. They will be ignored for topology computation. [ Info: Initial pass found O and C with invalid number of bonds. Test Summary: | Pass Broken Total Time MOF examples | 74 3 77 18m26.1s [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. [ Warning: Detected 6 structures of dimension 0 in Clathrate_hydrate, possibly complex solvent residues. They will be ignored for topology computation. [ Warning: Missing _symmetry_equiv_pos_as_xyz and _space_group_symop_operation_xyz fields, will rely on other symmetry indications. [ Warning: Guessing bonds with custom algorithm (from Chemfiles and VMD). This may take a while for big structures and may be inexact. [ Info: To avoid guessing bonds, use a file format that contains the bonds. Test Summary: | Pass Total Time Other kinds of structures | 3 3 1.0s [ Info: Checking that all known topologies are recognized (this can take a few minutes). [ Info: Use multiple threads to reduce this time Test Summary: | Pass Total Time Archive | 17492 17492 7m19.6s [ Info: Testing pcu [ Info: Testing afy, AFY [ Info: Testing apc, APC [ Info: Testing bam [ Info: Testing bcf [ Info: Testing cdp [ Info: Testing cnd [ Info: Testing ecb [ Info: Testing fiv [ Info: Testing ftd [ Info: Testing ftj [ Info: Testing ins [ Info: Testing kgt [ Info: Testing mot [ Info: Testing moz [ Info: Testing muh [ Info: Testing pbz [ Info: Testing qom [ Info: Testing sig [ Info: Testing sma [ Info: Testing sod-f [ Info: Testing sod-h [ Info: Testing utj [ Info: Testing utp [ Info: Testing nts [ Info: Testing lth [ Info: Testing cys [ Info: Testing llw-z [ Info: Testing nts Test Summary: | Pass Total Time Module | 31 31 54.6s Test Summary: | Pass Broken Total Time Executable | 29 1 30 10.1s 1 / 36 .................................................................................................... 2 / 36 .................................................................................................... 3 / 36 .................................................................................................... 4 / 36 .................................................................................................... 5 / 36 .................................................................................................... 6 / 36 .................................................................................................... 7 / 36 .................................................................................................... 8 / 36 .................................................................................................... 9 / 36 .................................................................................................... 10 / 36 .................................................................................................... 11 / 36 .................................................................................................... 12 / 36 .................................................................................................... 13 / 36 .................................................................................................... 14 / 36 .................................................................................................... 15 / 36 .................................................................................................... 16 / 36 .................................................................................................... 17 / 36 .................................................................................................... 18 / 36 .................................................. 19 / 36 .................................................. 20 / 36 .................................................. 21 / 36 .................................................. 22 / 36 .................................................. 23 / 36 .................................................. 24 / 36 .................................................. 25 / 36 .................................................. 26 / 36 .................................................. 27 / 36 .................................................. 28 / 36 .................................................. 29 / 36 .................................................. 30 / 36 .................................................. 31 / 36 .................................................. 32 / 36 ................... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 23 running 1 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_process_events at /source/src/jl_uv.c:395 process_events at ./libuv.jl:125 [inlined] wait at ./task.jl:1023 yield at ./task.jl:902 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:673 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:805 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:34 unknown function (ip: 0x70f133de3d0e) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:87 [inlined] #topological_genome#396 at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:90 [inlined] macro expansion at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/test/runtests.jl:539 [inlined] #645#threadsfor_fun#28 at ./threadingconstructs.jl:253 #645#threadsfor_fun at ./threadingconstructs.jl:220 [inlined] #1 at ./threadingconstructs.jl:154 unknown function (ip: 0x70f12f754d0f) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000070f0fe005dc0 Total snapshots: 318. Utilization: 100% ╎318 …threadingconstructs.jl:154; (::Base.Threads.var"#1#2"{var"#645#threads… ╎ 318 …threadingconstructs.jl:220; #645#threadsfor_fun ╎ 318 …hreadingconstructs.jl:253; (::var"#645#threadsfor_fun#36"{var"#645#t… ╎ 318 …vGQH/test/runtests.jl:539; macro expansion ╎ 318 …stalNets/src/query.jl:90; topological_genome ╎ 318 …stalNets/src/query.jl:90; #topological_genome#396 ╎ ╎ 318 …talNets/src/query.jl:87; topological_genome ╎ ╎ 318 …alNets/src/query.jl:153; topological_genome(group::UnderlyingNe… ╎ ╎ 318 …alNets/src/query.jl:34; topological_genome(net::CrystalNet2D{R… ╎ ╎ 318 …src/minimization.jl:274; minimize ╎ ╎ 318 …rc/minimization.jl:287; minimize_unstable 1╎ ╎ ╎ 318 …rc/minimization.jl:805; find_first_valid_translation_unstab… 1╎ ╎ ╎ 1 @Base/array.jl:0; collect(itr::Base.Generator{Vector{Period… 1╎ ╎ ╎ 1 @Base/array.jl:0; fill!(B::BitVector, x::Bool) 2╎ ╎ ╎ 2 @Base/bitarray.jl:377; fill!(B::BitVector, x::Bool) 1╎ ╎ ╎ 1 …c/minimization.jl:0; translation_to_direct_map(shrunk_pvma… 1╎ ╎ ╎ 199 …c/minimization.jl:673; translation_to_direct_map(shrunk_pv… 3╎ ╎ ╎ 24 @Base/task.jl:900; yield() ╎ ╎ ╎ 1 @Base/task.jl:816; enq_work(t::Task) 1╎ ╎ ╎ 1 @Base/task.jl:274; threadpool 1╎ ╎ ╎ 1 @Base/task.jl:817; enq_work(t::Task) 1╎ ╎ ╎ 1 @Base/task.jl:821; enq_work(t::Task) ╎ ╎ ╎ 18 @Base/task.jl:822; enq_work(t::Task) 2╎ ╎ ╎ 2 @Base/lock.jl:0; workqueue_for(tid::Int64) 2╎ ╎ ╎ 7 @Base/task.jl:721; push!(W::Base.IntrusiveLinkedListSync… ╎ ╎ ╎ ╎ 5 @Base/locks-mt.jl:43; lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ 2 @Base/locks-mt.jl:53; trylock 2╎ ╎ ╎ ╎ 2 …se/promotion.jl:639; == ╎ ╎ ╎ ╎ 3 @Base/locks-mt.jl:56; trylock 3╎ ╎ ╎ ╎ 3 …se/promotion.jl:639; == ╎ ╎ ╎ 3 @Base/task.jl:723; push!(W::Base.IntrusiveLinkedListSync… ╎ ╎ ╎ ╎ 3 …e/linked_list.jl:57; push! 3╎ ╎ ╎ ╎ 3 @Base/Base.jl:53; setproperty! ╎ ╎ ╎ 2 @Base/task.jl:725; push!(W::Base.IntrusiveLinkedListSync… 1╎ ╎ ╎ ╎ 1 @Base/Base.jl:49; getproperty ╎ ╎ ╎ ╎ 1 @Base/locks-mt.jl:68; unlock 1╎ ╎ ╎ ╎ 1 @Base/gcutils.jl:160; enable_finalizers 2╎ ╎ ╎ 2 @Base/task.jl:770; workqueue_for(tid::Int64) ╎ ╎ ╎ 2 @Base/task.jl:771; workqueue_for(tid::Int64) ╎ ╎ ╎ ╎ 2 …ase/operators.jl:426; >= 2╎ ╎ ╎ ╎ 2 @Base/int.jl:514; <= 2╎ ╎ ╎ 2 @Base/task.jl:901; yield() 2╎ ╎ ╎ 172 @Base/task.jl:902; yield() 1╎ ╎ ╎ 1 @Base/task.jl:1018; wait() ╎ ╎ ╎ 3 @Base/task.jl:1020; wait() 2╎ ╎ ╎ 2 @Base/lock.jl:0; workqueue_for(tid::Int64) 1╎ ╎ ╎ 1 @Base/task.jl:769; workqueue_for(tid::Int64) ╎ ╎ ╎ 14 @Base/task.jl:1021; wait() ╎ ╎ ╎ 13 @Base/task.jl:1010; poptask(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:746; popfirst!(W::Base.IntrusiveLinkedLis… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:0; trypoptask(W::Base.IntrusiveLinkedList… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:990; trypoptask(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:991; trypoptask(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 8 @Base/task.jl:992; trypoptask(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:746; popfirst!(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 3 @Base/task.jl:747; popfirst!(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 …ase/locks-mt.jl:41; lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ 1 …ase/locks-mt.jl:43; lock(l::Base.Threads.SpinLock) ╎ ╎ ╎ ╎ 1 …ase/locks-mt.jl:56; trylock 1╎ ╎ ╎ ╎ 1 …e/promotion.jl:639; == 1╎ ╎ ╎ ╎ 3 @Base/task.jl:749; popfirst!(W::Base.IntrusiveLinkedLi… 1╎ ╎ ╎ ╎ 1 …/linked_list.jl:85; popfirst! ╎ ╎ ╎ ╎ 1 …/linked_list.jl:86; popfirst! 1╎ ╎ ╎ ╎ 1 …/linked_list.jl:92; list_deletefirst! 1╎ ╎ ╎ ╎ 1 @Base/task.jl:993; trypoptask(W::Base.IntrusiveLinkedLi… ╎ ╎ ╎ 1 @Base/task.jl:1014; poptask(W::Base.IntrusiveLinkedListS… 1╎ ╎ ╎ ╎ 1 @Base/task.jl:909; set_next_task 1╎ ╎ ╎ 4 @Base/task.jl:1022; wait() 2╎ ╎ ╎ 2 @Base/task.jl:947; try_yieldto(undo::typeof(Base.ensure_… 1╎ ╎ ╎ 1 @Base/task.jl:948; try_yieldto(undo::typeof(Base.ensure_… ╎ ╎ ╎ 148 @Base/task.jl:1023; wait() 148╎ ╎ ╎ 148 @Base/libuv.jl:125; process_events ╎ ╎ ╎ 2 …c/minimization.jl:675; translation_to_direct_map(shrunk_pv… 2╎ ╎ ╎ 2 …ase/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:676; translation_to_direct_map(shrunk_pv… 1╎ ╎ ╎ 1 …ase/essentials.jl:917; getindex ╎ ╎ ╎ 4 …c/minimization.jl:678; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 4 …/src/stability.jl:81; getindex 2╎ ╎ ╎ 2 …ase/essentials.jl:916; getindex 2╎ ╎ ╎ 2 …ase/essentials.jl:917; getindex ╎ ╎ ╎ 2 …c/minimization.jl:682; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 2 …c/minimization.jl:593; backtrack_to!(vmapprogress::Vector… 1╎ ╎ ╎ 1 @Base/array.jl:0; attribute_next_available_modify!(vmappr… ╎ ╎ ╎ 1 …c/minimization.jl:578; attribute_next_available_modify!(… 1╎ ╎ ╎ 1 …se/essentials.jl:917; getindex ╎ ╎ ╎ 33 …c/minimization.jl:695; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 7 @Base/array.jl:791; collect(itr::Base.Generator{Vector{Per… ╎ ╎ ╎ 3 @Base/generator.jl:45; iterate ╎ ╎ ╎ 3 @Base/array.jl:902; iterate ╎ ╎ ╎ ╎ 3 @Base/array.jl:902; iterate 2╎ ╎ ╎ ╎ 2 …e/essentials.jl:916; getindex 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:917; getindex ╎ ╎ ╎ 4 @Base/generator.jl:48; iterate ╎ ╎ ╎ 3 …/minimization.jl:696; #348 3╎ ╎ ╎ ╎ 3 …se/essentials.jl:917; getindex ╎ ╎ ╎ 1 …/minimization.jl:697; #348 1╎ ╎ ╎ ╎ 1 …se/essentials.jl:917; getindex ╎ ╎ ╎ 15 @Base/array.jl:796; collect(itr::Base.Generator{Vector{Per… ╎ ╎ ╎ 15 @Base/array.jl:676; _array_for ╎ ╎ ╎ 15 …abstractarray.jl:867; similar ╎ ╎ ╎ ╎ 15 …abstractarray.jl:868; similar ╎ ╎ ╎ ╎ 15 @Base/boot.jl:591; Array ╎ ╎ ╎ ╎ 5 @Base/boot.jl:578; Array 4╎ ╎ ╎ ╎ 5 @Base/boot.jl:516; GenericMemory 6╎ ╎ ╎ ╎ 10 @Base/boot.jl:579; Array 4╎ ╎ ╎ ╎ 4 @Base/boot.jl:522; memoryref ╎ ╎ ╎ 11 @Base/array.jl:801; collect(itr::Base.Generator{Vector{Per… ╎ ╎ ╎ 11 @Base/array.jl:827; collect_to_with_first! ╎ ╎ ╎ 9 @Base/array.jl:849; collect_to! ╎ ╎ ╎ ╎ 2 …ase/generator.jl:45; iterate ╎ ╎ ╎ ╎ 2 @Base/array.jl:902; iterate 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:0; getindex 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:917; getindex ╎ ╎ ╎ ╎ 7 …ase/generator.jl:48; iterate ╎ ╎ ╎ ╎ 1 …minimization.jl:696; #348 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:917; getindex ╎ ╎ ╎ ╎ 2 …minimization.jl:698; #348 2╎ ╎ ╎ ╎ 2 @Base/int.jl:87; + ╎ ╎ ╎ ╎ 4 …minimization.jl:699; #348 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:0; getindex 3╎ ╎ ╎ ╎ 3 …e/essentials.jl:917; getindex ╎ ╎ ╎ 2 @Base/array.jl:853; collect_to! 2╎ ╎ ╎ ╎ 2 @Base/array.jl:987; setindex! ╎ ╎ ╎ 26 …c/minimization.jl:703; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 26 @Base/sort.jl:1687; sort! ╎ ╎ ╎ 26 @Base/sort.jl:1694; #sort!#32 ╎ ╎ ╎ 26 @Base/sort.jl:554; _sort! ╎ ╎ ╎ ╎ 26 @Base/sort.jl:676; _sort! ╎ ╎ ╎ ╎ 26 @Base/sort.jl:737; _sort! ╎ ╎ ╎ ╎ 26 @Base/sort.jl:790; _sort!(v::Vector{PeriodicVertex2D}… 4╎ ╎ ╎ ╎ 4 @Base/sort.jl:0; _sort!(v::Vector{PeriodicVertex2D},… 3╎ ╎ ╎ ╎ 3 @Base/sort.jl:817; _sort!(v::Vector{PeriodicVertex2D… ╎ ╎ ╎ ╎ 1 @Base/sort.jl:820; _sort!(v::Vector{PeriodicVertex2D… 1╎ ╎ ╎ ╎ 1 @Base/range.jl:904; iterate ╎ ╎ ╎ ╎ 3 @Base/sort.jl:824; _sort!(v::Vector{PeriodicVertex2D… 3╎ ╎ ╎ ╎ 3 …/essentials.jl:917; getindex ╎ ╎ ╎ ╎ 11 @Base/sort.jl:825; _sort!(v::Vector{PeriodicVertex2D… 8╎ ╎ ╎ ╎ 11 …se/ordering.jl:120; lt ╎ ╎ ╎ ╎ ╎ 3 …se/ordering.jl:118; lt ╎ ╎ ╎ ╎ ╎ 3 …ns/vertices.jl:54; isless ╎ ╎ ╎ ╎ ╎ 3 …s/vertices.jl:51; cmp ╎ ╎ ╎ ╎ ╎ 3 …ase/number.jl:42; iszero 3╎ ╎ ╎ ╎ ╎ 3 …promotion.jl:639; == ╎ ╎ ╎ ╎ 4 @Base/sort.jl:831; _sort!(v::Vector{PeriodicVertex2D… 2╎ ╎ ╎ ╎ 2 @Base/array.jl:986; setindex! 1╎ ╎ ╎ ╎ 1 @Base/array.jl:987; setindex! 1╎ ╎ ╎ ╎ 1 …/essentials.jl:0; setindex! ╎ ╎ ╎ 1 …c/minimization.jl:704; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/some.jl:158; macro expansion ╎ ╎ ╎ 1 @Base/array.jl:2404; findfirst 1╎ ╎ ╎ 1 @Base/array.jl:0; findnext ╎ ╎ ╎ 15 …c/minimization.jl:705; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 15 @Base/bitarray.jl:403; falses ╎ ╎ ╎ 15 @Base/bitarray.jl:405; falses 1╎ ╎ ╎ 1 @Base/array.jl:0; fill!(B::BitVector, x::Bool) ╎ ╎ ╎ 13 @Base/bitarray.jl:71; BitArray ╎ ╎ ╎ ╎ 9 @Base/bitarray.jl:37; BitArray ╎ ╎ ╎ ╎ 7 @Base/boot.jl:578; Array 7╎ ╎ ╎ ╎ 7 @Base/boot.jl:516; GenericMemory 2╎ ╎ ╎ ╎ 2 @Base/boot.jl:579; Array ╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:38; BitArray ╎ ╎ ╎ ╎ 1 …se/operators.jl:379; > 1╎ ╎ ╎ ╎ 1 @Base/int.jl:83; < 3╎ ╎ ╎ ╎ 3 @Base/bitarray.jl:39; BitArray ╎ ╎ ╎ 1 @Base/bitarray.jl:379; fill!(B::BitVector, x::Bool) ╎ ╎ ╎ ╎ 1 …bstractarray.jl:1212; isempty 1╎ ╎ ╎ ╎ 1 …se/promotion.jl:639; == ╎ ╎ ╎ 3 …c/minimization.jl:709; translation_to_direct_map(shrunk_pv… 3╎ ╎ ╎ 3 …ase/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:710; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/iterators.jl:205; iterate ╎ ╎ ╎ 1 @Base/iterators.jl:206; iterate ╎ ╎ ╎ 1 @Base/array.jl:902; iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:902; iterate 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:917; getindex ╎ ╎ ╎ 3 …c/minimization.jl:711; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 3 @Base/bitarray.jl:682; getindex ╎ ╎ ╎ 3 @Base/bitarray.jl:676; unsafe_bitgetindex 3╎ ╎ ╎ 3 …se/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:717; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/iterators.jl:206; iterate 1╎ ╎ ╎ 1 @Base/array.jl:902; iterate 1╎ ╎ ╎ 8 …c/minimization.jl:722; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 3 …c/minimization.jl:586; backtrack_to!(vmapprogress::Vector… ╎ ╎ ╎ 3 …ase/essentials.jl:916; getindex 3╎ ╎ ╎ 3 …ase/essentials.jl:11; length ╎ ╎ ╎ 4 …c/minimization.jl:593; backtrack_to!(vmapprogress::Vector… ╎ ╎ ╎ 1 …c/minimization.jl:560; attribute_next_available_modify!(… ╎ ╎ ╎ 1 …/src/stability.jl:81; getindex 1╎ ╎ ╎ ╎ 1 …se/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:561; attribute_next_available_modify!(… ╎ ╎ ╎ 1 @Base/subarray.jl:226; view ╎ ╎ ╎ ╎ 1 @Base/range.jl:973; getindex ╎ ╎ ╎ ╎ 1 …bstractarray.jl:699; checkbounds ╎ ╎ ╎ ╎ 1 …bstractarray.jl:689; checkbounds ╎ ╎ ╎ ╎ 1 …bstractarray.jl:757; checkindex ╎ ╎ ╎ ╎ 1 …stractarray.jl:754; checkindex 1╎ ╎ ╎ ╎ ╎ 1 @Base/int.jl:513; < ╎ ╎ ╎ 1 …c/minimization.jl:565; attribute_next_available_modify!(… ╎ ╎ ╎ 1 @Base/array.jl:2404; findfirst ╎ ╎ ╎ ╎ 1 @Base/array.jl:2354; findnext 1╎ ╎ ╎ ╎ 1 …se/promotion.jl:639; == ╎ ╎ ╎ 1 …c/minimization.jl:571; attribute_next_available_modify!(… 1╎ ╎ ╎ 1 @Base/array.jl:986; setindex! ╎ ╎ ╎ 4 …c/minimization.jl:726; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 4 @Base/bitarray.jl:403; falses ╎ ╎ ╎ 4 @Base/bitarray.jl:405; falses ╎ ╎ ╎ 4 @Base/bitarray.jl:71; BitArray ╎ ╎ ╎ ╎ 3 @Base/bitarray.jl:37; BitArray ╎ ╎ ╎ ╎ 2 @Base/boot.jl:578; Array 2╎ ╎ ╎ ╎ 2 @Base/boot.jl:516; GenericMemory 1╎ ╎ ╎ ╎ 1 @Base/boot.jl:579; Array 1╎ ╎ ╎ ╎ 1 @Base/bitarray.jl:39; BitArray 1╎ ╎ ╎ 2 …c/minimization.jl:728; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/iterators.jl:205; iterate ╎ ╎ ╎ 1 @Base/iterators.jl:206; iterate ╎ ╎ ╎ 1 @Base/array.jl:902; iterate ╎ ╎ ╎ ╎ 1 @Base/array.jl:902; iterate 1╎ ╎ ╎ ╎ 1 …e/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:729; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/bitarray.jl:682; getindex ╎ ╎ ╎ 1 @Base/bitarray.jl:676; unsafe_bitgetindex 1╎ ╎ ╎ 1 …se/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:732; translation_to_direct_map(shrunk_pv… 1╎ ╎ ╎ 1 @Base/int.jl:86; - ╎ ╎ ╎ 1 …c/minimization.jl:733; translation_to_direct_map(shrunk_pv… 1╎ ╎ ╎ 1 …ase/essentials.jl:917; getindex ╎ ╎ ╎ 1 …c/minimization.jl:738; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/bitarray.jl:682; getindex ╎ ╎ ╎ 1 @Base/bitarray.jl:676; unsafe_bitgetindex 1╎ ╎ ╎ 1 …se/essentials.jl:916; getindex ╎ ╎ ╎ 1 …c/minimization.jl:739; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 …tions/vertices.jl:55; == 1╎ ╎ ╎ 1 …tions/vertices.jl:51; cmp ╎ ╎ ╎ 1 …c/minimization.jl:756; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 …c/minimization.jl:550; attribute_next_available! 1╎ ╎ ╎ 1 …c/minimization.jl:0; attribute_next_available_modify!(vm… ╎ ╎ ╎ 1 …c/minimization.jl:765; translation_to_direct_map(shrunk_pv… ╎ ╎ ╎ 1 @Base/iterators.jl:206; iterate ╎ ╎ ╎ 1 @Base/array.jl:902; iterate 1╎ ╎ ╎ 1 …se/essentials.jl:917; getindex ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x77b918af6442) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x77b918aeef9d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x77b918ae3526) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x77b918ae322d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x77b918ae2c1d) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x77b918adf0a6) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2734 _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 _include at ./loading.jl:2794 include at ./Base.jl:562 jfptr_include_47034.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 exec_options at ./client.jl:323 _start at ./client.jl:531 jfptr__start_73694.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x77b919d94249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000077b90c800010 Total snapshots: 1. Utilization: 0% ╎1 @Base/client.jl:531; _start() ╎ 1 @Base/client.jl:323; exec_options(opts::Base.JLOptions) ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 1 @Base/loading.jl:2794; _include(mapexpr::Function, mod::Module, _path::S… ╎ 1 @Base/loading.jl:2734; include_string(mapexpr::typeof(identity), mod::M… ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeof(… ╎ ╎ 1 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 1 @Pkg/src/API.jl:147; test ╎ ╎ 1 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 1 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::typ… ╎ ╎ ╎ 1 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec}; i… ╎ ╎ ╎ 1 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io::… ╎ ╎ ╎ 1 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vector… ╎ ╎ ╎ 1 …/src/Operations.jl:2011; test ╎ ╎ ╎ 1 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1841; kwcall(::@NamedTuple{preferences::… ╎ ╎ ╎ ╎ 1 …src/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 1 @Base/file.jl:815; mktempdir(fn::Function, parent::Strin… ╎ ╎ ╎ ╎ 1 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#11… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1902; (::Pkg.Operations.var"#116#121"… ╎ ╎ ╎ ╎ ╎ 1 …c/Operations.jl:1793; with_temp_env(fn::Pkg.Operatio… ╎ ╎ ╎ ╎ ╎ 1 …/Operations.jl:1935; (::Pkg.Operations.var"#118#123… ╎ ╎ ╎ ╎ ╎ 1 @Base/env.jl:265; withenv(::Pkg.Operations.var"#131… ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2086; (::Pkg.Operations.var"#131#13… ╎ ╎ ╎ ╎ ╎ ╎ 1 …Operations.jl:2146; subprocess_handler(cmd::Cmd,… ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/process.jl:694; wait(x::Base.Process, syncd… ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 1 …condition.jl:130; wait(c::Base.GenericCondit… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1021; wait() ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/task.jl:1012; poptask(W::Base.Intrusiv… [23] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/test/runtests.jl:403 uv__queue_empty at /workspace/srcdir/libuv/./src/queue.h:33 uv_run at /workspace/srcdir/libuv/src/unix/core.c:434 ijl_process_events at /source/src/jl_uv.c:395 process_events at ./libuv.jl:125 [inlined] wait at ./task.jl:1023 yield at ./task.jl:902 translation_to_direct_map at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:673 find_first_valid_translation_unstable at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:805 minimize_unstable at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:287 [inlined] minimize at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/minimization.jl:274 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:34 unknown function (ip: 0x70f133de3d0e) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:153 topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:87 [inlined] #topological_genome#396 at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:90 [inlined] topological_genome at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/src/query.jl:90 [inlined] macro expansion at /home/pkgeval/.julia/packages/CrystalNets/vvGQH/test/runtests.jl:539 [inlined] #645#threadsfor_fun#28 at ./threadingconstructs.jl:253 #645#threadsfor_fun at ./threadingconstructs.jl:220 [inlined] #1 at ./threadingconstructs.jl:154 unknown function (ip: 0x70f12f754d0f) _jl_invoke at /source/src/gf.c:2948 [inlined] ijl_apply_generic at /source/src/gf.c:3125 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1202 unknown function (ip: (nil)) Allocations: 2309686310 (Pool: 2309681480; Big: 4830); GC: 2930 PkgEval terminated after 2754.32s: test duration exceeded the time limit