Package evaluation of ClimaCoupler on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T17:18:18.405 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.67s ################################################################################ # Installation # Installing ClimaCoupler... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [4ade58fe] + ClimaCoupler v0.1.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.15.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [aae01518] + BandedMatrices v1.9.4 [8e7c35d0] + BlockArrays v1.6.3 [3a4d1b5c] + ClimaComms v0.6.8 [d414da3d] + ClimaCore v0.14.34 [4ade58fe] + ClimaCoupler v0.1.2 [b3f4f4ca] + ClimaUtilities v0.1.24 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [a8cc5b0e] + Crayons v4.1.1 [7445602f] + CubedSphere v0.3.2 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [1a297f60] + FillArrays v1.13.0 [53c48c17] + FixedPointNumbers v0.8.5 [f6369f11] + ForwardDiff v1.0.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [d54b0c1a] + GaussQuadrature v0.5.8 [88fa7841] + GilbertCurves v0.1.0 [f67ccb44] + HDF5 v0.17.2 [8197267c] + IntervalSets v0.7.11 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.35 ⌅ [0b1a1467] + KrylovKit v0.8.3 [b964fa9f] + LaTeXStrings v1.4.0 [9dccce8e] + LazyBroadcast v1.0.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.1.0 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [2e0e35c7] + Moshi v0.3.6 [c3c07f87] + MultiBroadcastFusion v0.3.3 [5da4648a] + NVTX v1.0.0 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [eebad327] + PkgVersion v0.3.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7181ea78] + RootSolvers v0.4.4 [7e49a35a] + RuntimeGeneratedFunctions v0.5.15 [0bca4576] + SciMLBase v2.102.1 [c0aeaf25] + SciMLOperators v1.3.1 [53ae85a6] + SciMLStructures v1.7.0 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [49b00bb7] + SurfaceFluxes v0.12.0 [2efcf032] + SymbolicIndexingInterface v0.3.41 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 ⌅ [6aa5eb33] + TaylorSeries v0.19.1 [b60c26fb] + Thermodynamics v0.12.13 [0fe1646c] + UnrolledUtilities v0.1.9 [013be700] + UnsafeAtomics v0.3.0 ⌅ [409d34a3] + VectorInterface v0.4.9 [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.1+0 [9c1d0b0a] + JuliaNVTXCallbacks_jll v0.2.1+0 [7cb0a576] + MPICH_jll v4.3.1+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] + NVTX_jll v3.2.1+0 [fe0851c0] + OpenMPI_jll v5.0.8+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [477f73a3] + libaec_jll v1.1.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 11.75s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 Precompiling package dependencies... Precompilation completed after 1276.53s ################################################################################ # Testing # Testing ClimaCoupler ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_YPjQI1/Project.toml` [4c88cf16] Aqua v0.8.13 [c7e460c6] ArgParse v1.2.0 ⌃ [13f3f980] CairoMakie v0.12.18 ⌅ [b2c96348] ClimaAtmos v0.27.9 [3a4d1b5c] ClimaComms v0.6.8 [d414da3d] ClimaCore v0.14.34 [908f55d8] ClimaCoreMakie v0.4.6 [d934ef94] ClimaCoreTempestRemap v0.3.18 [4ade58fe] ClimaCoupler v0.1.2 [5c42b081] ClimaParams v0.10.35 ⌅ [595c0a79] ClimaTimeSteppers v0.7.40 [b3f4f4ca] ClimaUtilities v0.1.24 ⌅ [ee78f7c6] Makie v0.21.18 [85f8d34a] NCDatasets v0.14.8 [08abe8d2] PrettyTables v2.4.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.102.1 [90137ffa] StaticArrays v1.9.13 [10745b16] Statistics v1.11.1 [49b00bb7] SurfaceFluxes v0.12.0 [b60c26fb] Thermodynamics v0.12.13 [56f22d72] Artifacts v1.11.0 [ade2ca70] Dates v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_YPjQI1/Manifest.toml` [47edcb42] ADTypes v1.15.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.13 [c7e460c6] ArgParse v1.2.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a14bc488] ArtifactWrappers v0.2.0 [86bc3604] AtmosphericProfilesLibrary v0.1.7 [a9b6321e] Atomix v1.1.1 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [aae01518] BandedMatrices v1.9.4 [18cc8868] BaseDirs v1.3.0 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.6.3 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 ⌃ [13f3f980] CairoMakie v0.12.18 [d360d2e6] ChainRulesCore v1.25.2 ⌅ [b2c96348] ClimaAtmos v0.27.9 [3a4d1b5c] ClimaComms v0.6.8 [d414da3d] ClimaCore v0.14.34 [908f55d8] ClimaCoreMakie v0.4.6 [d934ef94] ClimaCoreTempestRemap v0.3.18 [4ade58fe] ClimaCoupler v0.1.2 [1ecacbb8] ClimaDiagnostics v0.2.15 [5c42b081] ClimaParams v0.10.35 ⌅ [595c0a79] ClimaTimeSteppers v0.7.40 [b3f4f4ca] ClimaUtilities v0.1.24 [fb6a15b2] CloseOpenIntervals v0.1.13 ⌅ [6a9e3e04] CloudMicrophysics v0.22.13 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [1fbeeb36] CommonDataModel v0.3.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] 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[2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling ClimaCoupler... 13537.6 ms ✓ ClimaCoupler 1 dependency successfully precompiled in 16 seconds. 168 already precompiled. WARNING: using deprecated binding ColorTypes.RGB1 in Colors. , use XRGB instead. WARNING: Colors.RGB1 is deprecated, use ColorTypes.XRGB{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/test/aqua.jl:5 WARNING: using deprecated binding ColorTypes.RGB4 in Colors. , use RGBX instead. WARNING: Colors.RGB4 is deprecated, use ColorTypes.RGBX{T} where T<:Union{AbstractFloat, FixedPointNumbers.FixedPoint{T, f} where f where T<:Integer} instead. likely near /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/test/aqua.jl:5 Test Summary: | Pass Total Time Aqua tests | 10 10 55.9s Test Summary: | Pass Total Time Interfacer tests | 93 93 1m22.0s Test Summary: | Pass Total Time ConservationChecker tests | 24 24 23.1s [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUMultiThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUMultiThreaded. [ Info: Setting up single-process ClimaCoupler run on device: CPUSingleThreaded. Test Summary: | Pass Total Time Utilities tests | 20 20 12.2s [ Info: update_firstdayofmonth! at [Dates.DateTime("1979-03-21T00:00:00")] Test Summary: | Pass Total Time TimeManager tests | 199 199 5.0s -9.25 -9.25 Test Summary: | Pass Total Time FieldExchanger tests | 106 106 1m21.9s Test Summary: | Pass Total Time FluxCalculator tests | 33 33 2m26.7s [ Info: Saving checkpoint Unnamed model state to HDF5 on day 0 second 1 ┌ Info: Setting │ Interfacer.name(sim) = "Unnamed" └ " state to checkpoint: $(input_file), corresponding to day $(day) second $(sec)" = " state to checkpoint: test_checkpoint/checkpoint/checkpoint_Unnamed_1.hdf5, corresponding to day 0 second 1" Test Summary: | Pass Total Time Checkpointer tests | 3 3 28.6s Test Summary: | Pass Total Time experiment test: CoupledSims tests | 14 14 48.0s WARNING: Method definition set_surface_albedo!(Any, Any, Any, ClimaAtmos.CouplerAlbedo) in module ClimaAtmos at /home/pkgeval/.julia/packages/ClimaAtmos/MPMvB/src/cache/surface_albedo.jl:112 overwritten in module ##component model test: ClimaAtmos#351 at /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/experiments/ClimaEarth/components/atmosphere/climaatmos.jl:82. Test Summary: | Pass Total Time component model test: ClimaAtmos | 6 6 35.0s Test Summary: | Pass Total Time component model test: prescr. sea ice | 16 16 10.2s Test Summary: | Pass Total Time component model test: eisenman sea ice | 84 84 2m09.1s Test Summary: | Pass Total Time component model test: slab ocean | 6 6 0.6s Precompiling StructArraysGPUArraysCoreExt... 1992.2 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 1 dependency successfully precompiled in 2 seconds. 34 already precompiled. Precompiling DiffEqBaseUnitfulExt... 5284.8 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 1 dependency successfully precompiled in 7 seconds. 98 already precompiled. Precompiling DiffEqBaseDistributionsExt... 7624.9 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 1 dependency successfully precompiled in 12 seconds. 128 already precompiled. Precompiling DistributionsTestExt... 4931.6 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 48 already precompiled. Precompiling ClimaCoreMakie... 6206.8 ms ✓ PNGFiles 49907.7 ms ✓ TiffImages 10004.0 ms ✓ JpegTurbo 9444.1 ms ✓ Sixel 4543.5 ms ✓ OpenEXR 5574.4 ms ✓ ImageAxes 7474.1 ms ✓ WebP 3423.3 ms ✓ ImageMetadata 6212.8 ms ✓ Netpbm 58056.2 ms ✓ ClimaCoreMakie 10 dependencies successfully precompiled in 169 seconds. 334 already precompiled. Precompiling CairoMakie... 1522.3 ms ✓ Graphics 2628.6 ms ✓ Cairo 230200.1 ms ✓ CairoMakie 3 dependencies successfully precompiled in 239 seconds. 269 already precompiled. WARNING: Method definition plot_field_names(var"##debug diagnostics: amip plots#355".ClimaAtmosSimulation{C} where C) in module ##debug diagnostics: amip plots#355 at /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/experiments/ClimaEarth/user_io/debug_plots.jl:237 overwritten at /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/test/debug/debug_amip_plots.jl:29. WARNING: Method definition plot_field_names(var"##debug diagnostics: amip plots#355".BucketSimulation{C} where C) in module ##debug diagnostics: amip plots#355 at /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/experiments/ClimaEarth/user_io/debug_plots.jl:235 overwritten at /home/pkgeval/.julia/packages/ClimaCoupler/aL9xV/test/debug/debug_amip_plots.jl:30. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 639 running 1 of 1 signal (10): User defined signal 1 _ZN4llvm9KnownBitsD2Ev at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL28computeKnownBitsFromOperatorPKN4llvm8OperatorERKNS_5APIntERNS_9KnownBitsEjRKN12_GLOBAL__N_15QueryE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL16computeKnownBitsPKN4llvm5ValueERKNS_5APIntERNS_9KnownBitsEjRKN12_GLOBAL__N_15QueryE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL14isKnownNonZeroPKN4llvm5ValueERKNS_5APIntEjRKN12_GLOBAL__N_15QueryE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZL14isKnownNonZeroPKN4llvm5ValueEjRKN12_GLOBAL__N_15QueryE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm14isKnownNonZeroEPKNS_5ValueERKNS_10DataLayoutEjPNS_15AssumptionCacheEPKNS_11InstructionEPKNS_13DominatorTreeEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) Test Summary: | Pass Total Time debug diagnostics: amip plots | 5 5 11m39.7s _ZN4llvm16InstCombinerImpl13visitCallBaseERNS_8CallBaseE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm16InstCombinerImpl13visitCallInstERNS_8CallInstE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm16InstCombinerImpl3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) Testing ClimaCoupler tests passed Testing completed after 1374.88s PkgEval terminated after 2708.02s: test duration exceeded the time limit