Package evaluation of AlgebraicRewriting on Julia 1.11.5 (32ac370b68*) started at 2025-06-29T12:20:32.372 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.43s ################################################################################ # Installation # Installing AlgebraicRewriting... Resolving package versions... ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:680 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─ v0.2.24 Updating `~/.julia/environments/v1.11/Project.toml` [725a01d3] + AlgebraicRewriting v0.4.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [725a01d3] + AlgebraicRewriting v0.4.2 ⌃ [134e5e36] + Catlab v0.16.19 [3da002f7] + ColorTypes v0.12.1 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.16.0 [a81c6b42] + Compose v0.9.6 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] + GATlab v0.1.4 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [9c8b4983] + LightXML v0.9.1 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.93s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 6 direct dependencies failed to precompile: AlgebraicRewritingDataMigrationsExt Failed to precompile AlgebraicRewritingDataMigrationsExt [61b08a9c-d040-592e-aa21-4de700c460a0] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicRewritingDataMigrationsExt/jl_FtYXam". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_umN2Xf". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingDataMigrationsExt.jl:1 in expression starting at stdin:6 AlgebraicRewriting Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicRewriting/jl_w2tONo". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_QPkhRY". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ AlgebraicRewriting.CategoricalAlgebra ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [25] include(mod::Module, _path::String) @ Base ./Base.jl:562 [26] include(x::String) @ AlgebraicRewriting ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 [27] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [28] include @ ./Base.jl:562 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [30] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:6 AlgebraicPetri Failed to precompile AlgebraicPetri [4f99eebe-17bf-4e98-b6a1-2c4f205a959b] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicPetri/jl_wU2f4q". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_LWoO3g". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicPetri/WK5Qd/src/AlgebraicPetri.jl:1 in expression starting at stdin:6 AlgebraicRewritingLuxorExt Failed to precompile AlgebraicRewritingLuxorExt [37cb9f14-6fbc-53ad-b441-168fc6dcbed6] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicRewritingLuxorExt/jl_duCimA". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_ALrO9Q". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ AlgebraicRewriting.CategoricalAlgebra ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [25] include(mod::Module, _path::String) @ Base ./Base.jl:562 [26] include(x::String) @ AlgebraicRewriting ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 [27] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [28] include @ ./Base.jl:562 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [30] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicRewriting/jl_fKN9bs". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/ext/AlgebraicRewritingLuxorExt.jl:1 in expression starting at stdin:6 Catlab Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_xtrQ1Y". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 DataMigrations Failed to precompile DataMigrations [0c4ad18d-0c49-4bc2-90d5-5bca8f00d6ae] to "/home/pkgeval/.julia/compiled/v1.11/DataMigrations/jl_W7yigO". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_pLWFSk". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ DataMigrations ~/.julia/packages/DataMigrations/S2hc3/src/DataMigrations.jl:12 [24] top-level scope @ ~/.julia/packages/DataMigrations/S2hc3/src/DataMigrations.jl:17 [25] include @ ./Base.jl:562 [inlined] [26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [27] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/DataMigrations/S2hc3/src/Migrations.jl:1 in expression starting at /home/pkgeval/.julia/packages/DataMigrations/S2hc3/src/DataMigrations.jl:2 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 275.71s ################################################################################ # Testing # Testing AlgebraicRewriting Status `/tmp/jl_sCQqVZ/Project.toml` [4f99eebe] AlgebraicPetri v0.9.2 [725a01d3] AlgebraicRewriting v0.4.2 ⌃ [134e5e36] Catlab v0.16.19 [0c4ad18d] DataMigrations v0.1.2 [864edb3b] DataStructures v0.18.22 [ae8d54c2] Luxor v4.3.0 [08abe8d2] PrettyTables v2.4.0 [295af30f] Revise v3.8.0 [6ec83bb0] StructEquality v2.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_sCQqVZ/Manifest.toml` [227ef7b5] ACSets v0.2.24 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [23cfdc9f] AlgebraicInterfaces v0.1.4 [4f99eebe] AlgebraicPetri v0.9.2 [725a01d3] AlgebraicRewriting v0.4.2 [4fba245c] ArrayInterface v7.19.0 [159f3aea] Cairo v1.1.1 ⌃ [134e5e36] Catlab v0.16.19 [d360d2e6] ChainRulesCore v1.25.2 [da1fd8a2] CodeTracking v1.3.9 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.16.0 [a81c6b42] Compose v0.9.6 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [0c4ad18d] DataMigrations v0.1.2 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [ffbed154] DocStringExtensions v0.9.5 [e2ba6199] ExprTools v0.1.10 [c87230d0] FFMPEG v0.4.2 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 ⌅ [f0ffcf3b] GATlab v0.1.4 [46192b85] GPUArraysCore v0.2.0 [6b9d7cbe] GeneralizedGenerated v0.3.3 [a2bd30eb] Graphics v1.1.3 [b5f81e59] IOCapture v0.2.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [aa1ae85d] JuliaInterpreter v0.10.3 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [2ee39098] LabelledArrays v1.16.1 [9c8b4983] LightXML v0.9.1 [98b081ad] Literate v2.20.1 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.3.0 [ae8d54c2] Luxor v4.3.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.2 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [12d937ae] PEG v1.0.4 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [32a0d02f] PolygonAlgorithms v0.3.2 [d236fae5] PreallocationTools v0.4.27 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [295af30f] Revise v3.8.0 [c4c386cf] Rsvg v1.0.0 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [2efcf032] SymbolicIndexingInterface v0.3.41 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [6e34b625] Bzip2_jll v1.0.9+0 [83423d85] Cairo_jll v1.18.5+0 [2e619515] Expat_jll v2.6.5+0 ⌅ [b22a6f82] FFMPEG_jll v4.4.4+1 [a3f928ae] Fontconfig_jll v2.16.0+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [7746bdde] Glib_jll v2.84.3+0 [3b182d85] Graphite2_jll v1.3.15+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [c1c5ebd0] LAME_jll v3.100.2+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 [e9f186c6] Libffi_jll v3.4.7+0 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.0+0 [925c91fb] Librsvg_jll v2.54.7+0 [89763e89] Libtiff_jll v4.7.1+0 [38a345b3] Libuuid_jll v2.41.0+0 [e7412a2a] Ogg_jll v1.3.5+1 [458c3c95] OpenSSL_jll v3.5.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.3.3+0 [36c8627f] Pango_jll v1.56.3+0 ⌅ [30392449] Pixman_jll v0.44.2+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [da03df04] gdk_pixbuf_jll v2.42.13+0 [a4ae2306] libaom_jll v3.11.0+0 [0ac62f75] libass_jll v0.15.2+0 [f638f0a6] libfdk_aac_jll v2.0.3+0 [b53b4c65] libpng_jll v1.6.49+0 [f27f6e37] libvorbis_jll v1.3.7+2 ⌅ [1270edf5] x264_jll v2021.5.5+0 ⌅ [dfaa095f] x265_jll v3.5.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling AlgebraicRewriting... ✗ Catlab Info Given AlgebraicRewriting was explicitly requested, output will be shown live  ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace:  [1] top-level scope  @ :0  [2] #macroexpand#74  @ ./expr.jl:125 [inlined]  [3] macroexpand(m::Module, x::Any)  @ Base ./expr.jl:123  [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any)  @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235  [5] include(mod::Module, _path::String)  @ Base ./Base.jl:562  [6] include(x::String)  @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6  [7] top-level scope  @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37  [8] include(mod::Module, _path::String)  @ Base ./Base.jl:562  [9] include(x::String)  @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1  [10] top-level scope  @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5  [11] include  @ ./Base.jl:562 [inlined]  [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:2881  [13] top-level scope  @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_GclQT6". Stacktrace:  [1] error(s::String)  @ Base ./error.jl:35  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3174  [3] (::Base.var"#1110#1111"{Base.PkgId})()  @ Base ./loading.jl:2579  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95  [5] #mkpidlock#6  @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116  [7] #invokelatest#2  @ ./essentials.jl:1057 [inlined]  [8] invokelatest  @ ./essentials.jl:1052 [inlined]  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3698  [10] maybe_cachefile_lock  @ ./loading.jl:3695 [inlined]  [11] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2565  [12] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [13] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [14] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [15] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [16] macro expansion  @ ./loading.jl:2314 [inlined]  [17] macro expansion  @ ./lock.jl:273 [inlined]  [18] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [19] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [20] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [21] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:562  [23] include(x::String)  @ AlgebraicRewriting.CategoricalAlgebra ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1  [24] top-level scope  @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10  [25] include(mod::Module, _path::String)  @ Base ./Base.jl:562  [26] include(x::String)  @ AlgebraicRewriting ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1  [27] top-level scope  @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4  [28] include  @ ./Base.jl:562 [inlined]  [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2881  [30] top-level scope  @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:6 ✗ AlgebraicRewriting 0 dependencies successfully precompiled in 21 seconds. 79 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: AlgebraicRewriting Failed to precompile AlgebraicRewriting [725a01d3-f174-5bbd-84e1-b9417bad95d9] to "/home/pkgeval/.julia/compiled/v1.11/AlgebraicRewriting/jl_XGszLl". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_GclQT6". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3174 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3698 [10] maybe_cachefile_lock @ ./loading.jl:3695 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ AlgebraicRewriting.CategoricalAlgebra ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 [24] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:10 [25] include(mod::Module, _path::String) @ Base ./Base.jl:562 [26] include(x::String) @ AlgebraicRewriting ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 [27] top-level scope @ ~/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:4 [28] include @ ./Base.jl:562 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [30] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/FinSets.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/categorical_algebra/CategoricalAlgebra.jl:1 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/src/AlgebraicRewriting.jl:1 in expression starting at stdin:6 Catlab Failed to precompile Catlab [134e5e36-593f-5add-ad60-77f754baafbe] to "/home/pkgeval/.julia/compiled/v1.11/Catlab/jl_3SzepA". ERROR: LoadError: UndefVarError: `ThCategory` not defined in `Catlab.Theories` Stacktrace: [1] top-level scope @ :0 [2] #macroexpand#74 @ ./expr.jl:125 [inlined] [3] macroexpand(m::Module, x::Any) @ Base ./expr.jl:123 [4] var"@symbolic_model"(__source__::LineNumberNode, __module__::Module, decl::Any, theoryname::Any, body::Any) @ GATlab.Models.SymbolicModels ~/.julia/packages/GATlab/fO07H/src/models/SymbolicModels.jl:235 [5] include(mod::Module, _path::String) @ Base ./Base.jl:562 [6] include(x::String) @ Catlab.Theories ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:6 [7] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:37 [8] include(mod::Module, _path::String) @ Base ./Base.jl:562 [9] include(x::String) @ Catlab ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 [10] top-level scope @ ~/.julia/packages/Catlab/jPXBM/src/Catlab.jl:5 [11] include @ ./Base.jl:562 [inlined] [12] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2881 [13] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Category.jl:15 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/theories/Theories.jl:1 in expression starting at /home/pkgeval/.julia/packages/Catlab/jPXBM/src/Catlab.jl:1 in expression starting at stdin:6 in expression starting at /home/pkgeval/.julia/packages/AlgebraicRewriting/xBi5g/test/runtests.jl:4 Testing failed after 31.57s ERROR: LoadError: Package AlgebraicRewriting errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 342.47s: package fails to precompile