Package evaluation to test VisClaw on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T20:41:50.013 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.83s ################################################################################ # Installation # Installing VisClaw... Resolving package versions... Installed Conda ── v1.10.3 Installed PyCall ─ v1.96.4 Updating `~/.julia/environments/v1.11/Project.toml` [d5c85fe6] + VisClaw v1.1.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.4.0 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.8 [18cc8868] + BaseDirs v1.3.2 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.15.8 [d360d2e6] + ChainRulesCore v1.26.0 [a2cac450] + ColorBrewer v0.4.2 [35d6a980] + ColorSchemes v3.31.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [34da2185] + Compat v4.18.1 [95dc2771] + ComputePipeline v0.1.6 [8f4d0f93] + Conda v1.10.3 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [927a84f5] + DelaunayTriangulation v1.6.6 [8bb1440f] + DelimitedFiles v1.9.1 [3c3547ce] + DiskArrays v0.4.18 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.9 [411431e0] + Extents v0.1.6 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [8fc22ac5] + FilePaths v0.9.0 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.8 [fd0ad045] + GeometricalPredicates v0.4.2 [5c1252a2] + GeometryBasics v0.5.10 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [a98d9a8b] + Interpolations v0.16.2 [d1acc4aa] + IntervalArithmetic v1.0.2 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.10 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [8cdb02fc] + LazyModules v0.3.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [ee78f7c6] + Makie v0.24.8 [dbb5928d] + MappedArrays v0.4.3 [0a4f8689] + MathTeXEngine v0.6.7 [e1d29d7a] + Missings v1.2.0 [e94cdb99] + MosaicViews v0.3.4 [77ba4419] + NaNMath v1.1.3 [30363a11] + NetCDF v0.12.2 [f09324ee] + Netpbm v1.1.1 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.4 [647866c9] + PolygonOps v0.1.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [438e738f] + PyCall v1.96.4 [4b34888f] + QOI v1.0.2 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.2 [6c6a2e73] + Scratch v1.3.0 [65257c39] + ShaderAbstractions v0.5.0 [992d4aef] + Showoff v1.0.3 [73760f76] + SignedDistanceFields v0.4.1 [699a6c99] + SimpleTraits v0.9.5 [45858cf5] + Sixel v0.1.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [860ef19b] + StableRNGs v1.0.4 [cae243ae] + StackViews v0.1.2 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [09ab397b] + StructArrays v0.7.2 [ec057cc2] + StructUtils v2.6.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [62fd8b95] + TensorCore v0.1.1 [731e570b] + TiffImages v0.11.6 [3bb67fe8] + TranscodingStreams v0.11.3 [981d1d27] + TriplotBase v0.1.0 [1cfade01] + UnicodeFun v0.4.1 [1986cc42] + Unitful v1.27.0 [81def892] + VersionParsing v1.3.0 [d5c85fe6] + VisClaw v1.1.0 [e3aaa7dc] + WebP v0.1.3 [efce3f68] + WoodburyMatrices v1.1.0 [0b7ba130] + Blosc_jll v1.21.7+0 [6e34b625] + Bzip2_jll v1.0.9+0 [4e9b3aee] + CRlibm_jll v1.0.1+0 [83423d85] + Cairo_jll v1.18.5+0 [5ae413db] + EarCut_jll v2.2.4+0 [2e619515] + Expat_jll v2.7.3+0 [b22a6f82] + FFMPEG_jll v8.0.1+0 [f5851436] + FFTW_jll v3.3.11+0 [a3f928ae] + Fontconfig_jll v2.17.1+0 [d7e528f0] + FreeType2_jll v2.13.4+0 [559328eb] + FriBidi_jll v1.0.17+0 [b0724c58] + GettextRuntime_jll v0.22.4+0 [59f7168a] + Giflib_jll v5.2.3+0 [7746bdde] + Glib_jll v2.86.2+0 [3b182d85] + Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [2e76f6c2] + HarfBuzz_jll v8.5.1+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [905a6f67] + Imath_jll v3.2.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [c1c5ebd0] + LAME_jll v3.100.3+0 [88015f11] + LERC_jll v4.0.1+0 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [dd4b983a] + LZO_jll v2.10.3+0 ⌅ [e9f186c6] + Libffi_jll v3.4.7+0 [7e76a0d4] + Libglvnd_jll v1.7.1+1 [94ce4f54] + Libiconv_jll v1.18.0+0 [4b2f31a3] + Libmount_jll v2.41.2+0 [89763e89] + Libtiff_jll v4.7.2+0 [38a345b3] + Libuuid_jll v2.41.2+0 [5ced341a] + Lz4_jll v1.10.1+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [7243133f] + NetCDF_jll v401.900.300+0 [e7412a2a] + Ogg_jll v1.3.6+0 [6cdc7f73] + OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] + OpenEXR_jll v3.4.4+0 [fe0851c0] + OpenMPI_jll v5.0.9+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [91d4177d] + Opus_jll v1.6.0+0 [36c8627f] + Pango_jll v1.57.0+0 ⌅ [30392449] + Pixman_jll v0.44.2+0 [f50d1b31] + Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [ffd25f8a] + XZ_jll v5.8.2+0 [4f6342f7] + Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [3161d3a3] + Zstd_jll v1.5.7+1 [9a68df92] + isoband_jll v0.2.3+0 [477f73a3] + libaec_jll v1.1.4+0 [a4ae2306] + libaom_jll v3.13.1+0 [0ac62f75] + libass_jll v0.17.4+0 [f638f0a6] + libfdk_aac_jll v2.0.4+0 [b53b4c65] + libpng_jll v1.6.54+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.8+0 [c5f90fcd] + libwebp_jll v1.6.0+0 [337d8026] + libzip_jll v1.11.3+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 ⌅ [1270edf5] + x264_jll v10164.0.1+0 [dfaa095f] + x265_jll v4.1.0+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [8bf52ea8] + CRC32c v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [efcefdf7] + PCRE2_jll v10.42.0+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Building Conda ─→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 79.76s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... ✗ libgeotiff_jll 912111.4 ms ? VisClaw ✗ GDAL_jll ✗ GMT_jll ✗ GMT ✗ GMT → GMTParkerFFTExt 0 dependencies successfully precompiled in 973 seconds. 328 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ VisClaw │ WARNING: Method definition tweight(AbstractArray{T, N} where N) where {T<:(Unitful.Quantity{T, D, U} where U where D where T)} in module InterpolationsUnitfulExt at /home/pkgeval/.julia/packages/Interpolations/dR5oF/ext/InterpolationsUnitfulExt.jl:5 overwritten in module InterpolationsUnitfulExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ERROR: LoadError: The following 2 direct dependencies failed to precompile: GMT Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.11/GMT/jl_z1SBq5". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:120 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include(mod::Module, _path::String) @ Base ./Base.jl:562 [22] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [23] include @ ./Base.jl:562 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2924 [25] top-level scope @ stdin:6 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/GMT_jll.jl:2 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.11/GMT_jll/jl_0i2Hfe". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3217 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3741 [10] maybe_cachefile_lock @ ./loading.jl:3738 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] top-level scope @ ~/.julia/packages/GMT/hBo3v/src/GMT.jl:47 [23] include @ ./Base.jl:562 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [25] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GMT/hBo3v/src/GMT.jl:1 in expression starting at stdin:6 GMTParkerFFTExt Failed to precompile GMTParkerFFTExt [35a23bc9-6f20-5cbc-8971-9cdf66427582] to "/home/pkgeval/.julia/compiled/v1.11/GMTParkerFFTExt/jl_RbKtJt". ERROR: LoadError: InitError: could not load library "/home/pkgeval/.julia/artifacts/0e25413977e1aa52abfecdd2bee850e964b8d477/lib/libproj.so" libsqlite3.so.0: cannot open shared object file: No such file or directory Stacktrace: [1] dlopen(s::String, flags::UInt32; throw_error::Bool) @ Base.Libc.Libdl ./libdl.jl:120 [2] dlopen(s::String, flags::UInt32) @ Base.Libc.Libdl ./libdl.jl:119 [3] macro expansion @ ~/.julia/packages/JLLWrappers/m2Pjh/src/products/library_generators.jl:63 [inlined] [4] __init__() @ PROJ_jll ~/.julia/packages/PROJ_jll/lq5nt/src/wrappers/x86_64-linux-gnu-cxx11.jl:50 [5] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1378 [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1366 [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) @ Base ./loading.jl:1254 [8] _include_from_serialized (repeats 2 times) @ ./loading.jl:1210 [inlined] [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2057 [10] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2527 [11] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [12] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [13] invoke_in_world @ ./essentials.jl:1086 [inlined] [14] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [15] macro expansion @ ./loading.jl:2314 [inlined] [16] macro expansion @ ./lock.jl:273 [inlined] [17] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [18] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [19] invoke_in_world @ ./essentials.jl:1086 [inlined] [20] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [21] include(mod::Module, _path::String) @ Base ./Base.jl:562 [22] top-level scope @ ~/.julia/packages/JLLWrappers/m2Pjh/src/toplevel_generators.jl:199 [23] include @ ./Base.jl:562 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2924 [25] top-level scope @ stdin:6 during initialization of module PROJ_jll in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/wrappers/x86_64-linux-gnu.jl:6 in expression starting at /home/pkgeval/.julia/packages/GMT_jll/G913q/src/GMT_jll.jl:2 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GMT_jll [b68b8c3f-ed99-5bef-9675-4739d9426b26] to "/home/pkgeval/.julia/compiled/v1.11/GMT_jll/jl_6TaaUF". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3217 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3741 [10] maybe_cachefile_lock @ ./loading.jl:3738 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] top-level scope @ ~/.julia/packages/GMT/hBo3v/src/GMT.jl:47 [23] include @ ./Base.jl:562 [inlined] [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2924 [25] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GMT/hBo3v/src/GMT.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile GMT [5752ebe1-31b9-557e-87aa-f909b540aa54] to "/home/pkgeval/.julia/compiled/v1.11/GMT/jl_Dp1Z1T". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3217 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3741 [10] maybe_cachefile_lock @ ./loading.jl:3738 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include @ ./Base.jl:562 [inlined] [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [24] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GMT/hBo3v/ext/GMTParkerFFTExt/GMTParkerFFTExt.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 986.67s ################################################################################ # Testing # Testing VisClaw Status `/tmp/jl_2A45p4/Project.toml` [13f3f980] CairoMakie v0.15.8 [8bb1440f] DelimitedFiles v1.9.1 [5752ebe1] GMT v1.35.0 [fd0ad045] GeometricalPredicates v0.4.2 [a98d9a8b] Interpolations v0.16.2 [30363a11] NetCDF v0.12.2 [438e738f] PyCall v1.96.4 [ae029012] Requires v1.3.1 [295af30f] Revise v3.13.1 [10745b16] Statistics v1.11.1 [d5c85fe6] VisClaw v1.1.0 [ade2ca70] Dates v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_2A45p4/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [d360d2e6] ChainRulesCore v1.26.0 [da1fd8a2] CodeTracking v3.0.0 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.18.1 [807dbc54] Compiler v0.1.1 [95dc2771] ComputePipeline v0.1.6 [8f4d0f93] Conda v1.10.3 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.6 [8bb1440f] DelimitedFiles v1.9.1 [3c3547ce] DiskArrays v0.4.18 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [5752ebe1] GMT v1.35.0 [fd0ad045] GeometricalPredicates v0.4.2 [5c1252a2] GeometryBasics v0.5.10 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [b835a17e] JpegTurbo v0.1.6 [aa1ae85d] JuliaInterpreter v0.10.9 [5ab0869b] KernelDensity v0.6.10 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.5.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [ee78f7c6] Makie v0.24.8 [dbb5928d] MappedArrays v0.4.3 [0a4f8689] MathTeXEngine v0.6.7 [e1d29d7a] Missings v1.2.0 [e94cdb99] MosaicViews v0.3.4 [77ba4419] NaNMath v1.1.3 [30363a11] NetCDF v0.12.2 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 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v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [731e570b] TiffImages v0.11.6 [3bb67fe8] TranscodingStreams v0.11.3 [981d1d27] TriplotBase v0.1.0 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.27.0 [81def892] VersionParsing v1.3.0 [d5c85fe6] VisClaw v1.1.0 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [8ce61222] Arrow_jll v19.0.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 ⌅ [a7073274] GDAL_jll v303.1100.500+0 [d604d12d] GEOS_jll v3.14.1+0 ⌃ [b68b8c3f] GMT_jll v6.6.0+0 [b0724c58] GettextRuntime_jll v0.22.4+0 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SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling VisClaw... Info Given VisClaw was explicitly requested, output will be shown live  ENV["CLAW"] is not defined. Set the env like the following in your default shell: export CLAW = "/path/to/top/level/clawpack" ┌ Warning: Python clawpack module not found. Using default version 5.13.0. └ @ VisClaw ~/.julia/packages/VisClaw/VJKrL/src/VisClaw.jl:39 Clawpack version: 5.13.0 93436.5 ms ✓ VisClaw 1 dependency successfully precompiled in 107 seconds. 294 already precompiled. 1 dependency had output during precompilation: ┌ VisClaw │ [Output was shown above] └ Precompiling DistributionsTestExt... 5500.3 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 9 seconds. 46 already precompiled. ERROR: LoadError: IOError: readdir("/home/pkgeval/.julia/packages/VisClaw/VJKrL/src/../example"): no such file or directory (ENOENT) Stacktrace: [1] uv_error @ ./libuv.jl:106 [inlined] [2] _readdir(dir::String; return_objects::Bool, join::Bool, sort::Bool) @ Base.Filesystem ./file.jl:995 [3] _readdir @ ./file.jl:988 [inlined] [4] readdir(dir::String) @ Base.Filesystem ./file.jl:917 [5] top-level scope @ ~/.julia/packages/VisClaw/VJKrL/test/runtests.jl:7 [6] include(fname::String) @ Main ./sysimg.jl:38 [7] top-level scope @ none:6 in expression starting at /home/pkgeval/.julia/packages/VisClaw/VJKrL/test/runtests.jl:7 Testing failed after 215.1s ERROR: LoadError: Package VisClaw errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1342.94s: package requires a missing binary dependency