Package evaluation to test UltraDark on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T15:58:08.423 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.66s ################################################################################ # Installation # Installing UltraDark... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [1c8d022d] + UltraDark v0.9.7 Updating `~/.julia/environments/v1.11/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [7d9f7c33] + Accessors v0.1.43 ⌅ [79e6a3ab] + Adapt v3.7.2 [dce04be8] + ArgCheck v2.5.0 ⌃ [4fba245c] + ArrayInterface v7.7.1 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [ffbed154] + DocStringExtensions v0.9.5 [e2ba6199] + ExprTools v0.1.10 [e189563c] + ExternalDocstrings v0.1.1 [7a1cc6ca] + FFTW v1.10.0 [5789e2e9] + FileIO v1.17.1 [41a02a25] + Folds v0.2.10 [f67ccb44] + HDF5 v0.17.2 [615f187c] + IfElse v0.1.1 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [da04e1cc] + MPI v0.20.23 [3da0fdf6] + MPIPreferences v0.1.11 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [15e1cf62] + NPZ v0.4.3 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 [69de0a69] + Parsers v2.8.3 ⌅ [0e08944d] + PencilArrays v0.18.0 ⌃ [4a48f351] + PencilFFTs v0.15.2 [eebad327] + PkgVersion v0.3.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [189a3867] + Reexport v1.2.2 [42d2dcc6] + Referenceables v0.1.3 [ae029012] + Requires v1.3.1 [431bcebd] + SciMLPublic v1.0.1 [efcf1570] + Setfield v1.1.2 [171d559e] + SplittablesBase v0.1.15 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [15972242] + StaticPermutations v0.3.0 [10745b16] + Statistics v1.11.1 [5e0ebb24] + Strided v2.3.2 [4db3bf67] + StridedViews v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [24d252fe] + ThreadedScans v0.1.0 [a759f4b9] + TimerOutputs v0.5.29 [28d57a85] + Transducers v0.4.85 [9d95972d] + TupleTools v1.6.0 [1c8d022d] + UltraDark v0.9.7 [81def892] + VersionParsing v1.3.0 [a5390f91] + ZipFile v0.10.1 [f5851436] + FFTW_jll v3.3.11+0 ⌅ [0234f1f7] + HDF5_jll v1.14.6+0 [e33a78d0] + Hwloc_jll v2.12.2+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [856f044c] + MKL_jll v2025.2.0+0 [7cb0a576] + MPICH_jll v4.3.2+0 [f1f71cc9] + MPItrampoline_jll v5.5.4+0 [9237b28f] + MicrosoftMPI_jll v10.1.4+3 [fe0851c0] + OpenMPI_jll v5.0.9+0 [458c3c95] + OpenSSL_jll v3.5.4+0 ⌅ [02c8fc9c] + XML2_jll v2.13.9+0 [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0 [477f73a3] + libaec_jll v1.1.4+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.69s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.11/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 2928.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 5511.4 ms ✓ FreeTypeAbstraction 12149.0 ms ✓ GridLayoutBase 2717.1 ms ✓ Packing 15065.4 ms ✓ ShaderAbstractions 12366.6 ms ✓ PencilArrays 2078.7 ms ✓ NLSolversBase 45991.5 ms ✓ MathTeXEngine 25042.6 ms ✓ PencilArrays → PencilArraysHDF5Ext 24863.5 ms ✓ PencilFFTs 1886.0 ms ✓ LineSearches 80685.4 ms ✓ UltraDark 5590.2 ms ✓ Optim 385530.8 ms ✓ Makie 157573.5 ms ✓ CairoMakie 15 dependencies successfully precompiled in 801 seconds. 377 already precompiled. 1 dependency had output during precompilation: ┌ UltraDark │ [ Info: Reached time 1.0e-9 └ Precompilation completed after 822.83s ################################################################################ # Testing # Testing UltraDark ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1924 Status `/tmp/jl_HlWvlS/Project.toml` ⌅ [4c88cf16] Aqua v0.6.7 [336ed68f] CSV v0.10.15 ⌅ [13f3f980] CairoMakie v0.10.12 ⌅ [e30172f5] Documenter v0.27.25 ⌅ [f67ccb44] HDF5 v0.16.16 [da04e1cc] MPI v0.20.23 [0db19996] NBInclude v2.4.0 [15e1cf62] NPZ v0.4.3 ⌃ [4a48f351] PencilFFTs v0.15.2 ⌅ [1bc83da4] SafeTestsets v0.0.1 [1c8d022d] UltraDark v0.9.7 [1986cc42] Unitful v1.27.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_HlWvlS/Manifest.toml` [47edcb42] ADTypes v1.21.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 ⌅ [79e6a3ab] Adapt v3.7.2 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 ⌅ [4c88cf16] Aqua v0.6.7 [dce04be8] ArgCheck v2.5.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [198e06fe] BangBang v0.4.6 [18cc8868] BaseDirs v1.3.2 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.10.12 [d360d2e6] ChainRulesCore v1.26.0 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.1.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [e189563c] ExternalDocstrings v0.1.1 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [41a02a25] Folds v0.2.10 [59287772] Formatting v0.4.3 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [68eda718] GeoFormatTypes v0.4.5 ⌃ [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.9.2 [42e2da0e] Grisu v1.0.2 ⌅ [f67ccb44] HDF5 v0.16.16 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [842dd82b] InlineStrings v1.4.5 [18e54dd8] IntegerMathUtils v0.1.3 [a98d9a8b] Interpolations v0.16.2 [d1acc4aa] IntervalArithmetic v1.0.2 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b835a17e] JpegTurbo v0.1.6 [5ab0869b] KernelDensity v0.6.10 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.3 [d3d80556] LineSearches v7.6.0 [9b3f67b0] LinearAlgebraX v0.2.10 [2ab3a3ac] LogExpFunctions v0.3.29 [da04e1cc] MPI v0.20.23 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.19.12 ⌅ [20f20a25] MakieCore v0.6.9 [dbb5928d] MappedArrays v0.4.3 ⌅ [0a4f8689] MathTeXEngine v0.5.7 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [7475f97c] Mods v2.2.6 [e94cdb99] MosaicViews v0.3.4 [3b2b4ff1] Multisets v0.4.5 [0db19996] NBInclude v2.4.0 [d41bc354] NLSolversBase v8.0.0 [15e1cf62] NPZ v0.4.3 [77ba4419] NaNMath v1.1.3 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [429524aa] Optim v2.0.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [f57f5aa1] PNGFiles v0.4.4 [65ce6f38] PackageExtensionCompat v1.0.2 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 ⌅ [0e08944d] PencilArrays v0.18.1 ⌃ [4a48f351] PencilFFTs v0.15.2 [2ae35dd2] Permutations v0.4.23 [3bbf5609] PikaParser v0.6.1 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.4 [647866c9] PolygonOps v0.1.2 ⌃ [f27b6e38] Polynomials v4.0.21 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.11.0 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.2 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [42d2dcc6] Referenceables v0.1.3 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [286e9d63] RingLists v0.2.9 [79098fc4] Rmath v0.9.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.2 ⌅ [1bc83da4] SafeTestsets v0.0.1 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [efcf1570] Setfield v1.1.2 ⌅ [65257c39] ShaderAbstractions v0.4.1 [992d4aef] Showoff v1.0.3 [73760f76] SignedDistanceFields v0.4.1 [55797a34] SimpleGraphs v0.8.8 [ec83eff0] SimplePartitions v0.3.3 [cc47b68c] SimplePolynomials v0.2.18 [a6525b86] SimpleRandom v0.3.2 [699a6c99] SimpleTraits v0.9.5 [45858cf5] Sixel v0.1.5 [b85f4697] SoftGlobalScope v1.1.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 ⌅ [c5dd0088] StableHashTraits v1.3.4 [860ef19b] StableRNGs v1.0.4 [cae243ae] StackViews v0.1.2 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [15972242] StaticPermutations v0.3.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [5e0ebb24] Strided v2.3.2 [4db3bf67] StridedViews v0.4.2 ⌅ [09ab397b] StructArrays v0.6.18 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [24d252fe] ThreadedScans v0.1.0 [731e570b] TiffImages v0.11.6 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [28d57a85] Transducers v0.4.85 [981d1d27] TriplotBase v0.1.0 [9d95972d] TupleTools v1.6.0 [1c8d022d] UltraDark v0.9.7 [1cfade01] UnicodeFun v0.4.1 [1986cc42] Unitful v1.27.0 [81def892] VersionParsing v1.3.0 [ecbed89c] WeakKeyIdDicts v0.1.0 [ea10d353] WeakRefStrings v1.4.2 [e3aaa7dc] WebP v0.1.3 [efce3f68] WoodburyMatrices v1.1.0 [76eceee3] WorkerUtilities v1.6.1 [a5390f91] ZipFile v0.10.1 [6e34b625] Bzip2_jll v1.0.9+0 [4e9b3aee] CRlibm_jll v1.0.1+0 [83423d85] Cairo_jll v1.18.5+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.7.3+0 [b22a6f82] FFMPEG_jll v8.0.1+0 [f5851436] FFTW_jll v3.3.11+0 [a3f928ae] Fontconfig_jll v2.17.1+0 [d7e528f0] FreeType2_jll v2.13.4+0 [559328eb] FriBidi_jll v1.0.17+0 [b0724c58] GettextRuntime_jll v0.22.4+0 [59f7168a] Giflib_jll v5.2.3+0 [7746bdde] Glib_jll v2.86.2+0 [3b182d85] Graphite2_jll v1.3.15+0 ⌅ [0234f1f7] HDF5_jll v1.14.6+0 [2e76f6c2] HarfBuzz_jll v8.5.1+0 [e33a78d0] Hwloc_jll v2.12.2+0 [905a6f67] Imath_jll v3.2.2+0 [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0 [aacddb02] JpegTurbo_jll v3.1.4+0 [c1c5ebd0] LAME_jll v3.100.3+0 [88015f11] LERC_jll v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.4.4+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [9a68df92] isoband_jll v0.2.3+0 [477f73a3] libaec_jll v1.1.4+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.54+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [1317d2d5] oneTBB_jll v2022.0.0+1 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Error requiring `MPI` from `HDF5.Drivers` │ exception = │ LoadError: ConcurrencyViolationError("deadlock detected in loading HDF5 -> HDF5 && UltraDark") │ Stacktrace: │ [1] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) │ @ Base ./loading.jl:2132 │ [2] __require_prelocked(uuidkey::Base.PkgId, env::Nothing) │ @ Base ./loading.jl:2383 │ [3] #invoke_in_world#3 │ @ ./essentials.jl:1089 [inlined] │ [4] invoke_in_world │ @ ./essentials.jl:1086 [inlined] │ [5] _require_prelocked │ @ ./loading.jl:2375 [inlined] │ [6] macro expansion │ @ ./loading.jl:2314 [inlined] │ [7] macro expansion │ @ ./lock.jl:273 [inlined] │ [8] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2271 │ [9] #invoke_in_world#3 │ @ ./essentials.jl:1089 [inlined] │ [10] invoke_in_world │ @ ./essentials.jl:1086 [inlined] │ [11] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2260 │ [12] include(mod::Module, _path::String) │ @ Base ./Base.jl:562 │ [13] include(x::String) │ @ HDF5.Drivers ~/.julia/packages/HDF5/MIuzl/src/drivers/drivers.jl:1 │ [14] top-level scope │ @ ~/.julia/packages/Requires/1eCOK/src/Requires.jl:40 │ [15] eval │ @ ./boot.jl:430 [inlined] │ [16] eval │ @ ~/.julia/packages/HDF5/MIuzl/src/drivers/drivers.jl:1 [inlined] │ [17] (::HDF5.Drivers.var"#7#11")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:101 │ [18] macro expansion │ @ timing.jl:421 [inlined] │ [19] err(f::Any, listener::Module, modname::String, file::String, line::Any) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:47 │ [20] (::HDF5.Drivers.var"#6#10")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:100 │ [21] withpath(f::Any, path::String) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:37 │ [22] (::HDF5.Drivers.var"#5#9")() │ @ HDF5.Drivers ~/.julia/packages/Requires/1eCOK/src/require.jl:99 │ [23] listenpkg(f::Any, pkg::Base.PkgId) │ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:20 │ [24] macro expansion │ @ ~/.julia/packages/Requires/1eCOK/src/require.jl:98 [inlined] │ [25] __init__() │ @ HDF5.Drivers ~/.julia/packages/HDF5/MIuzl/src/drivers/drivers.jl:92 │ [26] run_module_init(mod::Module, i::Int64) │ @ Base ./loading.jl:1378 │ [27] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) │ @ Base ./loading.jl:1366 │ [28] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}, ignore_native::Nothing; register::Bool) │ @ Base ./loading.jl:1254 │ [29] _include_from_serialized (repeats 2 times) │ @ ./loading.jl:1210 [inlined] │ [30] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) │ @ Base ./loading.jl:2041 │ [31] _require(pkg::Base.PkgId, env::String) │ @ Base ./loading.jl:2527 │ [32] __require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2388 │ [33] #invoke_in_world#3 │ @ ./essentials.jl:1089 [inlined] │ [34] invoke_in_world │ @ ./essentials.jl:1086 [inlined] │ [35] _require_prelocked(uuidkey::Base.PkgId, env::String) │ @ Base ./loading.jl:2375 │ [36] macro expansion │ @ ./loading.jl:2314 [inlined] │ [37] macro expansion │ @ ./lock.jl:273 [inlined] │ [38] __require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2271 │ [39] #invoke_in_world#3 │ @ ./essentials.jl:1089 [inlined] │ [40] invoke_in_world │ @ ./essentials.jl:1086 [inlined] │ [41] require(into::Module, mod::Symbol) │ @ Base ./loading.jl:2260 │ [42] include(fname::String) │ @ Main ./sysimg.jl:38 │ [43] top-level scope │ @ none:6 │ [44] eval │ @ ./boot.jl:430 [inlined] │ [45] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:289 │ [46] _start() │ @ Base ./client.jl:524 │ in expression starting at /home/pkgeval/.julia/packages/HDF5/MIuzl/src/drivers/mpio.jl:3 └ @ Requires ~/.julia/packages/Requires/1eCOK/src/require.jl:51 ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Doctests: UltraDark | 1 1 2m27.4s Test Summary: | Pass Total Time grids.jl | 38 38 26.9s Test Summary: | Pass Broken Total Time grid outputs | 11 1 12 33.2s s = UltraDark.Summary.WallTime s = UltraDark.Summary.SimulationTime s = UltraDark.Summary.ScaleFactor s = UltraDark.Summary.TimeStep s = UltraDark.Summary.MeanDensity s = UltraDark.Summary.MaxDensity s = UltraDark.Summary.MaxDensityIndex s = UltraDark.Summary.RmsDensityContrast s = UltraDark.Summary.TotalMass s = UltraDark.Summary.EnergyGravity s = UltraDark.Summary.EnergyKineticQuantum s = UltraDark.Summary.AngularMomentum ┌ Warning: Angular momentum not implemented for PencilGrids └ @ UltraDark ~/.julia/packages/UltraDark/TdNuL/src/pencil_grids.jl:305 Test Summary: | Pass Total Time summaries compute | 23 23 1m58.1s Test Summary: | Pass Total Time Phase grad Grids | 22 22 1m02.8s Test Summary: | Pass Total Time Evolution | 26 26 2m38.7s [ Info: Reached time 0.002 [ Info: Reached time 0.004 [ Info: Reached time 0.006 [ Info: Reached time 0.008 [ Info: Reached time 0.010000000000000002 [ Info: Reached time 0.002 [ Info: Reached time 0.004 [ Info: Reached time 0.006 [ Info: Reached time 0.008 [ Info: Reached time 0.010000000000000002 Test Summary: | Pass Total Time full sim | 2 2 12.3s [ Info: Reached time 0.9999999999999998 [ Info: Reached time 0.9999999999999998 Test Summary: | Pass Broken Total Time soliton | 14 4 18 23.7s Precompiling CairoMakie... 2841.7 ms ✓ StructArrays → StructArraysAdaptExt 32568.9 ms ✓ ImageCore 7952.9 ms ✓ ColorSchemes 1448.9 ms ✓ StructArrays → StructArraysStaticArraysExt 1851.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 40273.5 ms ✓ Polynomials 52732.9 ms ✓ TiffImages 3996.0 ms ✓ OpenEXR 3551.4 ms ✓ ColorBrewer 1636.8 ms ✓ IntervalArithmetic → IntervalArithmeticRecipesBaseExt 9603.4 ms ✓ Distributions 2718.6 ms ✓ Cairo 4127.6 ms ✓ ImageBase 6178.4 ms ✓ PNGFiles 9983.4 ms ✓ JpegTurbo 9028.2 ms ✓ Sixel 7003.5 ms ✓ WebP 22129.3 ms ✓ PlotUtils 10485.7 ms ✓ GeometryBasics 3929.8 ms ✓ Polynomials → PolynomialsMakieCoreExt 2681.6 ms ✓ Polynomials → PolynomialsChainRulesCoreExt 2962.1 ms ✓ Polynomials → PolynomialsFFTWExt 2795.5 ms ✓ SimplePolynomials 5169.1 ms ✓ Distributions → DistributionsChainRulesCoreExt 4901.1 ms ✓ SimpleRandom 5429.3 ms ✓ ImageAxes 12006.8 ms ✓ GridLayoutBase 2664.6 ms ✓ Packing 3062.5 ms ✓ ShaderAbstractions 5213.2 ms ✓ FreeTypeAbstraction 2870.9 ms ✓ LinearAlgebraX 6462.3 ms ✓ KernelDensity 3246.8 ms ✓ ImageMetadata 25839.9 ms ✓ MathTeXEngine 92577.5 ms ✓ SimpleGraphs 6370.2 ms ✓ Netpbm 13528.3 ms ✓ DelaunayTriangulation 205594.1 ms ✓ Makie Info Given CairoMakie was explicitly requested, output will be shown live  WARNING: importing deprecated binding Makie.MakieLayout into CairoMakie. The module `MakieLayout` has been removed and integrated into Makie, so simply replace all usage of `MakieLayout` with `Makie`. WARNING: importing deprecated binding Makie._alternative_fonts into CairoMakie. , use ALTERNATIVE_FONTS instead. WARNING: importing deprecated binding Makie._current_figure into CairoMakie. , use CURRENT_FIGURE instead. WARNING: importing deprecated binding Makie._default_font into CairoMakie. , use DEFAULT_FONT instead. WARNING: importing deprecated binding Makie.default_palettes into CairoMakie. , use DEFAULT_PALETTES instead. WARNING: importing deprecated binding Makie.minimal_default into CairoMakie. , use MAKIE_DEFAULT_THEME instead. 156337.4 ms ✓ CairoMakie 39 dependencies successfully precompiled in 801 seconds. 261 already precompiled. 1 dependency had output during precompilation: ┌ CairoMakie │ [Output was shown above] └ Precompiling DistributionsTestExt... 4930.8 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 49 already precompiled. [ Info: Process ID 1 of 1 with 1 threads ┌ Info: Grids created │ MPI.Comm_rank(comm) = 0 └ size(grids.ψk) = (64, 64, 64) ┌ Info: Initialized └ MPI.Comm_rank(comm) = 0 [ Info: Reached time 0.2631578947368421 [ Info: Reached time 0.5263157894736841 [ Info: Reached time 0.7894736842105263 [ Info: Reached time 1.0526315789473684 [ Info: Reached time 1.31578947368421 [ Info: Reached time 1.5789473684210527 [ Info: Reached time 1.8421052631578942 [ Info: Reached time 2.1052631578947363 [ Info: Reached time 2.3684210526315783 [ Info: Reached time 2.6315789473684204 [ Info: Reached time 2.894736842105264 [ Info: Reached time 3.1578947368421053 [ Info: Reached time 3.4210526315789473 [ Info: Reached time 3.6842105263157894 [ Info: Reached time 3.9473684210526314 [ Info: Reached time 4.210526315789472 [ Info: Reached time 4.473684210526317 [ Info: Reached time 4.7368421052631575 [ Info: Reached time 4.999999999999998 ┌ Info: Simulation complete └ MPI.Comm_rank(comm) = 0 ┌ Info: Starting plots └ MPI.Comm_rank(comm) = 0 Test Summary: | Total Time soliton | 0 18m46.1s Precompiling CSV... 27123.4 ms ✓ CSV 1 dependency successfully precompiled in 27 seconds. 29 already precompiled. [ Info: Reached time 2.0 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 404 running 1 of 1 signal (10): User defined signal 1 _ZN12_GLOBAL__N_119HorizontalReduction10getRdxKindEPN4llvm5ValueE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_119HorizontalReduction14isCmpSelMinMaxEPN4llvm11InstructionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN12_GLOBAL__N_119HorizontalReduction25matchAssociativeReductionEPN4llvm7PHINodeEPNS1_11InstructionERNS1_15ScalarEvolutionERKNS1_10DataLayoutERKNS1_17TargetLibraryInfoE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17SLPVectorizerPass21vectorizeHorReductionEPNS_7PHINodeEPNS_5ValueEPNS_10BasicBlockERNS_13slpvectorizer7BoUpSLPEPNS_19TargetTransformInfoERNS_15SmallVectorImplINS_14WeakTrackingVHEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17SLPVectorizerPass24vectorizeRootInstructionEPNS_7PHINodeEPNS_5ValueEPNS_10BasicBlockERNS_13slpvectorizer7BoUpSLPEPNS_19TargetTransformInfoE.constprop.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17SLPVectorizerPass22vectorizeChainsInBlockEPNS_10BasicBlockERNS_13slpvectorizer7BoUpSLPE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17SLPVectorizerPass7runImplERNS_8FunctionEPNS_15ScalarEvolutionEPNS_19TargetTransformInfoEPNS_17TargetLibraryInfoEPNS_9AAResultsEPNS_8LoopInfoEPNS_13DominatorTreeEPNS_15AssumptionCacheEPNS_12DemandedBitsEPNS_25OptimizationRemarkEmitterE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm17SLPVectorizerPass3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 jl_add_to_ee at /source/src/jitlayers.cpp:2285 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2538 [inlined] jl_compile_method_internal at /source/src/gf.c:2425 _jl_invoke at /source/src/gf.c:2943 [inlined] ijl_apply_generic at /source/src/gf.c:3128 File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:290 File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:227 [inlined] #File#32 at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:223 [inlined] File at /home/pkgeval/.julia/packages/CSV/XLcqT/src/file.jl:162 unknown function (ip: 0x73bf3ed387ed) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 jfptr_include_47030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 include at /home/pkgeval/.julia/packages/SafeTestsets/A83XK/src/SafeTestsets.jl:23 unknown function (ip: 0x73bf3f1e2072) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:743 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 jfptr_eval_28361.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./sysimg.jl:38 unknown function (ip: 0x73bf69300082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73bf6a90d249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000073bf5d9fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:524; _start() ╎ 1 @Base/client.jl:289; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:430; eval ╎ 1 @Base/sysimg.jl:38; include(fname::String) ╎ 1 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Base/boot.jl:430; eval(m::Module, e::Any) ╎ ╎ 1 …K/src/SafeTestsets.jl:23; include(x::String) ╎ ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ ╎ 1 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _… ╎ ╎ ╎ 1 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity),… ╎ ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ ╎ 1 @CSV/src/file.jl:162; CSV.File(source::String) ╎ ╎ ╎ 1 @CSV/src/file.jl:223; #File#32 ╎ ╎ ╎ 1 @CSV/src/file.jl:227; File ╎ ╎ ╎ ╎ 1 @CSV/src/file.jl:290; CSV.File(ctx::CSV.Context, chunking::… [ Info: Reached time 1.9999999999999998 Test Summary: | Pass Total Time scale factor | 4 4 1m29.8s ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x7e4c17cf4952) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x7e4c17ce232d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x7e4c17cd68c6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x7e4c17cd65cd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x7e4c17cd5fad) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x7e4c17cd2446) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 jfptr_include_47030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7e4c19181249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007e4c0c3fc010 Total snapshots: 32. Utilization: 0% ╎32 @Base/client.jl:524; _start() ╎ 32 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 32 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 32 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path:… ╎ 32 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod:… ╎ 32 @Base/boot.jl:430; eval ╎ ╎ 32 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 32 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 32 @Pkg/src/API.jl:147; test ╎ ╎ 32 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 32 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 32 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 32 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 32 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 32 …src/Operations.jl:2011; test ╎ ╎ ╎ 32 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 32 …rc/Operations.jl:1841; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 32 …rc/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 32 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 32 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 32 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 32 …/Operations.jl:1902; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 32 …/Operations.jl:1793; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 32 …Operations.jl:1935; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 32 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 32 …Operations.jl:2086; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 32 …perations.jl:2146; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 32 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 32 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 32 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 32 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 32 …ase/task.jl:1021; wait() 31╎ ╎ ╎ ╎ ╎ ╎ ╎ 32 …ase/task.jl:1012; poptask(W::Base.Intrus… Activating new project at `/tmp/jl_xJ3oEb` [404] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/UltraDark/TdNuL/examples/growth.ipynb:In[2]:4 _ZN4llvm4Type9getInt8TyERNS_11LLVMContextE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) runOnFunction at /source/src/llvm-final-gc-lowering.cpp:267 run at /source/src/llvm-final-gc-lowering.cpp:284 run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 run at /source/usr/include/llvm/IR/PassManager.h:517 [inlined] run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:89 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) run at /source/src/pipeline.cpp:777 operator() at /source/src/jitlayers.cpp:1298 withModuleDo<(anonymous namespace)::OptimizerT::operator()(llvm::orc::ThreadSafeModule, llvm::orc::MaterializationResponsibility&) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1259 [inlined] CallImpl<(anonymous namespace)::OptimizerT<4> > at /source/usr/include/llvm/ADT/FunctionExtras.h:221 _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 jl_add_to_ee at /source/src/jitlayers.cpp:2285 jl_add_to_ee at /source/src/jitlayers.cpp:2285 jl_add_to_ee at /source/src/jitlayers.cpp:2285 jl_add_to_ee at /source/src/jitlayers.cpp:2285 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2538 [inlined] jl_compile_method_internal at /source/src/gf.c:2425 _jl_invoke at /source/src/gf.c:2943 [inlined] ijl_apply_generic at /source/src/gf.c:3128 add at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #add#25 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] add at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #add#24 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] add at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x73bf2ba3e6a2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 PkgEval terminated after 2723.6s: test duration exceeded the time limit