Package evaluation to test UMAP on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T09:37:35.382 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.56s ################################################################################ # Installation # Installing UMAP... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [c4f8c510] + UMAP v0.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.22.0 [bbf7d656] + CommonSubexpressions v0.3.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [f6369f11] + ForwardDiff v1.3.1 [86223c79] + Graphs v1.13.3 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [2fda8390] + LsqFit v0.15.1 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [dd2c4c9e] + NearestNeighborDescent v0.3.8 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [c4f8c510] + UMAP v0.2.0 ⌅ [68821587] + Arpack_jll v3.5.2+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.32s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 20944.3 ms ✓ UMAP 1 dependency successfully precompiled in 26 seconds. 143 already precompiled. Precompilation completed after 42.26s ################################################################################ # Testing # Testing UMAP Status `/tmp/jl_JTBN89/Project.toml` [7d9f7c33] Accessors v0.1.43 [a0c0ee7d] DifferentiationInterface v0.7.14 [b4f34e82] Distances v0.10.12 [dd2c4c9e] NearestNeighborDescent v0.3.8 [c4f8c510] UMAP v0.2.0 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_JTBN89/Manifest.toml` [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.22.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [f6369f11] ForwardDiff v1.3.1 [46192b85] GPUArraysCore v0.2.0 [86223c79] Graphs v1.13.3 [34004b35] HypergeometricFunctions v0.3.28 [7869d1d1] IRTools v0.4.15 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [2fda8390] LsqFit v0.15.1 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [dd2c4c9e] NearestNeighborDescent v0.3.8 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [c4f8c510] UMAP v0.2.0 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 ⌅ [68821587] Arpack_jll v3.5.2+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Zygote... 62389.5 ms ✓ Zygote 1 dependency successfully precompiled in 63 seconds. 64 already precompiled. Precompiling ZygoteDistancesExt... 6526.8 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 7 seconds. 69 already precompiled. Precompiling DifferentiationInterfaceZygoteExt... 3758.4 ms ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 1 dependency successfully precompiled in 4 seconds. 73 already precompiled. Test Summary: | Pass Broken Total Time utils tests | 32 1 33 7.7s ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 Test Summary: | Pass Total Time Nearest Neighbors Tests | 185 185 33.8s Test Summary: | Pass Total Time simplicial sets tests | 145 145 1m06.3s Test Summary: | Pass Total Time membership_fn tests | 51 51 21.2s Test Summary: | Pass Total Time embeddings tests | 162 162 31.9s Test Summary: | Pass Total Time optimize_embedding tests | 18 18 59.1s Test Summary: | Pass Total Time Configuration Tests | 28 28 3.7s Test Summary: | Pass Broken Total Time umap tests | 9 1 10 19.8s ┌ Warning: `top` is deprecated, use `first` instead. │ caller = macro expansion at search.jl:42 [inlined] └ @ Core ~/.julia/packages/NearestNeighborDescent/J15hU/src/search.jl:42 Test Summary: | Pass Total Time umap transform tests | 6 6 6.4s Testing UMAP tests passed Testing completed after 345.61s PkgEval succeeded after 413.35s