Package evaluation to test TMLE on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T16:15:31.192 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 11.82s ################################################################################ # Installation # Installing TMLE... Resolving package versions... Installed GPUArraysCore ─────────────── v0.2.0 Installed IrrationalConstants ───────── v0.2.6 Installed ScientificTypesBase ───────── v3.0.0 Installed Crayons ───────────────────── v4.1.1 Installed ColorTypes ────────────────── v0.12.1 Installed Scratch ───────────────────── v1.3.0 Installed JLD2 ──────────────────────── v0.6.3 Installed Transducers ───────────────── v0.4.85 Installed AutoHashEquals ────────────── v2.2.0 Installed MLCore ────────────────────── v1.0.0 Installed Adapt ─────────────────────── v4.4.0 Installed StatisticalMeasuresBase ───── v0.1.3 Installed Rmath ─────────────────────── v0.9.0 Installed ArnoldiMethod ─────────────── v0.4.0 Installed HypergeometricFunctions ───── v0.3.28 Installed PrettyTables ──────────────── v2.4.0 Installed ShowCases ─────────────────── v0.1.0 Installed ArgCheck ──────────────────── v2.5.0 Installed ContextVariablesX ─────────── v0.1.3 Installed CategoricalDistributions ──── v0.1.15 Installed MLJModelInterface ─────────── v1.12.1 Installed StatsFuns ─────────────────── v1.5.2 Installed Accessors ─────────────────── v0.1.43 Installed Preferences ───────────────── v1.5.1 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed FLoopsBase ────────────────── v0.1.1 Installed PtrArrays ─────────────────── v1.3.0 Installed TableTraits ───────────────── v1.0.1 Installed Inflate ───────────────────── v0.1.5 Installed TMLE ──────────────────────── v0.20.3 Installed StatisticalMeasures ───────── v0.2.1 Installed ChunkCodecLibZlib ─────────── v1.0.0 Installed StatisticalTraits ─────────── v3.5.0 Installed NNlib ─────────────────────── v0.9.33 Installed SpecialFunctions ──────────── v2.6.1 Installed SentinelArrays ────────────── v1.4.9 Installed RelocatableFolders ────────── v1.0.1 Installed HashArrayMappedTries ──────── v0.2.0 Installed PDMats ────────────────────── v0.11.37 Installed Tables ────────────────────── v1.12.1 Installed CategoricalArrays ─────────── v0.10.9 Installed Setfield ──────────────────── v1.1.2 Installed DataAPI ───────────────────── v1.16.0 Installed LearnAPI ──────────────────── v1.0.1 Installed FixedPointNumbers ─────────── v0.8.5 Installed RecipesBase ───────────────── v1.3.4 Installed PooledArrays ──────────────── v1.4.3 Installed Baselet ───────────────────── v0.1.1 Installed InlineStrings ─────────────── v1.4.5 Installed ScientificTypes ───────────── v3.1.1 Installed StaticArrays ──────────────── v1.9.16 Installed MLJBase ───────────────────── v1.9.2 Installed JLLWrappers ───────────────── v1.7.1 Installed ProgressMeter ─────────────── v1.11.0 Installed ChunkCodecLibZstd ─────────── v1.0.0 Installed StaticArraysCore ──────────── v1.4.4 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Roots ─────────────────────── v2.2.10 Installed ConstructionBase ──────────── v1.6.0 Installed MicroCollections ──────────── v0.2.0 Installed PrecompileTools ───────────── v1.2.1 Installed DataValueInterfaces ───────── v1.0.0 Installed DefineSingletons ──────────── v0.1.2 Installed ChunkCodecCore ────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed OrderedCollections ────────── v1.8.1 Installed NameResolution ────────────── v0.1.5 Installed ScopedValues ──────────────── v1.5.0 Installed InitialValues ─────────────── v0.3.1 Installed ChainRulesCore ────────────── v1.26.0 Installed Graphs ────────────────────── v1.13.3 Installed InvertedIndices ───────────── v1.3.1 Installed Combinatorics ─────────────── v1.1.0 Installed DelimitedFiles ────────────── v1.9.1 Installed HypothesisTests ───────────── v0.11.6 Installed FillArrays ────────────────── v1.16.0 Installed Reexport ──────────────────── v1.2.2 Installed QuadGK ────────────────────── v2.11.2 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed FileIO ────────────────────── v1.17.1 Installed Statistics ────────────────── v1.11.1 Installed StatsModels ───────────────── v0.7.8 Installed SplittablesBase ───────────── v0.1.15 Installed ShiftedArrays ─────────────── v2.0.0 Installed DataStructures ────────────── v0.19.3 Installed LogExpFunctions ───────────── v0.3.29 Installed GLM ───────────────────────── v1.9.2 Installed Requires ──────────────────── v1.3.1 Installed MLJModels ─────────────────── v0.17.9 Installed DataFrames ────────────────── v1.8.1 Installed ComputationalResources ────── v0.3.2 Installed PrettyPrinting ────────────── v0.4.2 Installed AliasTables ───────────────── v1.1.3 Installed MLJGLMInterface ───────────── v0.3.7 Installed BangBang ──────────────────── v0.4.6 Installed KernelAbstractions ────────── v0.9.39 Installed MLStyle ───────────────────── v0.4.17 Installed PrettyPrint ───────────────── v0.2.0 Installed StatsAPI ──────────────────── v1.8.0 Installed MacroTools ────────────────── v0.5.16 Installed MetaGraphsNext ────────────── v0.7.5 Installed MLUtils ───────────────────── v0.4.8 Installed Compat ────────────────────── v4.18.1 Installed CompositionsBase ──────────── v0.1.2 Installed Distributions ─────────────── v0.25.123 Installed UnPack ────────────────────── v1.0.2 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed JuliaVariables ────────────── v0.2.4 Installed InverseFunctions ──────────── v0.1.17 Installed Parameters ────────────────── v0.12.3 Installed CommonSolve ───────────────── v0.2.6 Installed UnsafeAtomics ─────────────── v0.3.0 Installed Distances ─────────────────── v0.10.12 Installed Missings ──────────────────── v1.2.0 Installed SimpleTraits ──────────────── v0.9.5 Installed StringManipulation ────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed Atomix ────────────────────── v1.1.2 Installed DocStringExtensions ───────── v0.9.5 Installed StatsBase ─────────────────── v0.34.10 Installed FLoops ────────────────────── v0.2.2 Updating `~/.julia/environments/v1.11/Project.toml` [8afdd2fb] + TMLE v0.20.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [15f4f7f2] + AutoHashEquals v2.2.0 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 ⌅ [324d7699] + CategoricalArrays v0.10.9 ⌅ [af321ab8] + CategoricalDistributions v0.1.15 [d360d2e6] + ChainRulesCore v1.26.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [3da002f7] + ColorTypes v0.12.1 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [ed09eef8] + ComputationalResources v0.3.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [53c48c17] + FixedPointNumbers v0.8.5 [38e38edf] + GLM v1.9.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.13.3 [076d061b] + HashArrayMappedTries v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [09f84164] + HypothesisTests v0.11.6 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [842dd82b] + InlineStrings v1.4.5 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 [b964fa9f] + LaTeXStrings v1.4.0 ⌅ [92ad9a40] + LearnAPI v1.0.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 ⌃ [a7f614a8] + MLJBase v1.9.2 [caf8df21] + MLJGLMInterface v0.3.7 [e80e1ace] + MLJModelInterface v1.12.1 ⌅ [d491faf4] + MLJModels v0.17.9 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [fa8bd995] + MetaGraphsNext v0.7.5 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.33 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [54e16d92] + PrettyPrinting v0.4.2 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [f2b01f46] + Roots v2.2.10 ⌃ [321657f4] + ScientificTypes v3.1.1 [30f210dd] + ScientificTypesBase v3.0.0 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 ⌅ [a19d573c] + StatisticalMeasures v0.2.1 [c062fc1d] + StatisticalMeasuresBase v0.1.3 [64bff920] + StatisticalTraits v3.5.0 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [8afdd2fb] + TMLE v0.20.3 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [3a884ed6] + UnPack v1.0.2 [013be700] + UnsafeAtomics v0.3.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.9s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3178.7 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. Precompiling package dependencies... Precompiling CUDA_Runtime_jll... 754.5 ms ✓ Preferences 663.5 ms ✓ JLLWrappers 820.8 ms ✓ CUDA_Driver_jll 3964.3 ms ✓ CUDA_Runtime_jll 4 dependencies successfully precompiled in 9 seconds. 24 already precompiled. Precompiling project... 1907.4 ms ✓ Combinatorics 566.1 ms ✓ ScientificTypesBase 2479.7 ms ✓ PrettyPrinting 881.0 ms ✓ AbstractFFTs 576.3 ms ✓ LaTeXStrings 767.3 ms ✓ PositiveFactorizations 2535.2 ms ✓ LinearMaps 522.2 ms ✓ IteratorInterfaceExtensions 3047.5 ms ✓ UnsafeAtomics 710.6 ms ✓ WorkerUtilities 680.9 ms ✓ StatsAPI 1227.7 ms ✓ ADTypes 698.4 ms ✓ ChunkCodecCore 1192.5 ms ✓ InitialValues 540.9 ms ✓ CEnum 865.1 ms ✓ NamedTupleTools 788.4 ms ✓ UnPack 1849.2 ms ✓ FillArrays 652.7 ms ✓ InverseFunctions 900.3 ms ✓ Statistics 497.1 ms ✓ CommonSolve 623.1 ms ✓ PrettyPrint 623.1 ms ✓ ArgCheck 711.0 ms ✓ ShowCases 4140.7 ms ✓ MacroTools 603.0 ms ✓ ShiftedArrays 922.1 ms ✓ OrderedCollections 871.1 ms ✓ AutoHashEquals 847.2 ms ✓ Requires 493.7 ms ✓ DataValueInterfaces 574.2 ms ✓ EnumX 677.5 ms ✓ RealDot 751.7 ms ✓ StableRNGs 523.7 ms ✓ Reexport 843.4 ms ✓ DocStringExtensions 1123.8 ms ✓ InlineStrings 808.6 ms ✓ AbstractTrees 1701.3 ms ✓ IrrationalConstants 534.1 ms ✓ CompositionsBase 531.0 ms ✓ PtrArrays 878.9 ms ✓ TranscodingStreams 612.6 ms ✓ HashArrayMappedTries 555.5 ms ✓ DefineSingletons 761.8 ms ✓ NaNMath 920.0 ms ✓ LearnAPI 771.0 ms ✓ DelimitedFiles 576.7 ms ✓ InvertedIndices 27394.9 ms ✓ MLStyle 753.2 ms ✓ Inflate 750.8 ms ✓ ConstructionBase 571.5 ms ✓ DataAPI 1929.1 ms ✓ Crayons 741.7 ms ✓ ComputationalResources 689.4 ms ✓ StaticArraysCore 1940.2 ms ✓ Baselet 952.6 ms ✓ SuiteSparse 1603.1 ms ✓ ProgressMeter 1710.3 ms ✓ SentinelArrays 1407.1 ms ✓ StructTypes 749.9 ms ✓ Scratch 974.7 ms ✓ Compat 772.0 ms ✓ PrecompileTools 1170.7 ms ✓ LLVMOpenMP_jll 1180.4 ms ✓ Rmath_jll 1177.5 ms ✓ Zstd_jll 1169.6 ms ✓ Libiconv_jll 1165.4 ms ✓ OpenSpecFun_jll 728.4 ms ✓ StatisticalTraits 2991.1 ms ✓ AbstractFFTs → AbstractFFTsTestExt 1921.0 ms ✓ LinearMaps → LinearMapsSparseArraysExt 1087.9 ms ✓ TableTraits 1057.6 ms ✓ Atomix 1757.9 ms ✓ DifferentiationInterface 788.5 ms ✓ ChunkCodecLibZlib 1178.6 ms ✓ FillArrays → FillArraysSparseArraysExt 1093.6 ms ✓ InverseFunctions → InverseFunctionsTestExt 763.4 ms ✓ InverseFunctions → InverseFunctionsDatesExt 3832.1 ms ✓ FixedPointNumbers 1268.1 ms ✓ Distances 1075.6 ms ✓ Statistics → SparseArraysExt 696.5 ms ✓ LinearMaps → LinearMapsStatisticsExt 831.0 ms ✓ FillArrays → FillArraysStatisticsExt 702.4 ms ✓ NameResolution 1586.4 ms ✓ CommonSubexpressions 4177.9 ms ✓ IRTools 2770.1 ms ✓ SimpleTraits 3042.9 ms ✓ DataStructures 731.5 ms ✓ Parameters 755.6 ms ✓ Adapt 8531.5 ms ✓ FileIO 1205.7 ms ✓ LogExpFunctions 715.3 ms ✓ CompositionsBase → CompositionsBaseInverseFunctionsExt 910.9 ms ✓ AliasTables 805.2 ms ✓ CodecZlib 672.9 ms ✓ ScopedValues 682.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 712.8 ms ✓ ADTypes → ADTypesConstructionBaseExt 839.5 ms ✓ PooledArrays 764.7 ms ✓ Missings 745.5 ms ✓ DiffResults 1602.2 ms ✓ PDMats 1011.2 ms ✓ SparseInverseSubset 1175.1 ms ✓ SparseMatricesCSR 702.9 ms ✓ RelocatableFolders 689.2 ms ✓ Compat → CompatLinearAlgebraExt 13415.0 ms ✓ StaticArrays 3006.5 ms ✓ RecipesBase 3614.6 ms ✓ StringManipulation 19579.3 ms ✓ Parsers 1146.4 ms ✓ XGBoost_jll 5149.2 ms ✓ XGBoost_GPU_jll 1515.7 ms ✓ Rmath 1112.5 ms ✓ ChunkCodecLibZstd 989.1 ms ✓ StringEncodings 2374.7 ms ✓ MLJModelInterface 1727.3 ms ✓ Tables 1069.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 3284.5 ms ✓ ColorTypes 1058.4 ms ✓ Distances → DistancesSparseArraysExt 13112.3 ms ✓ JuliaVariables 844.9 ms ✓ SortingAlgorithms 1949.7 ms ✓ QuadGK 1030.4 ms ✓ Adapt → AdaptSparseArraysExt 915.4 ms ✓ ArrayInterface 838.7 ms ✓ GPUArraysCore 691.3 ms ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt 5095.4 ms ✓ SpecialFunctions 3416.7 ms ✓ Setfield 5251.9 ms ✓ Accessors 6812.8 ms ✓ CategoricalArrays 1139.9 ms ✓ FillArrays → FillArraysPDMatsExt 1598.5 ms ✓ FilePathsBase 2330.0 ms ✓ ChainRulesCore 729.7 ms ✓ ContextVariablesX 2884.2 ms ✓ ArnoldiMethod 1210.5 ms ✓ StaticArrays → StaticArraysStatisticsExt 1263.9 ms ✓ FillArrays → FillArraysStaticArraysExt 1233.6 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1242.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1523.7 ms ✓ Adapt → AdaptStaticArraysExt 3643.6 ms ✓ IterativeSolvers 15515.9 ms ✓ JSON3 3899.6 ms ✓ JSON 1015.3 ms ✓ InlineStrings → ParsersExt 53302.0 ms ✓ JLD2 2461.4 ms ✓ YAML 1370.1 ms ✓ StructArrays 987.9 ms ✓ TableOperations 2725.1 ms ✓ MLCore 32462.1 ms ✓ PrettyTables 1057.5 ms ✓ ColorTypes → StyledStringsExt 4036.1 ms ✓ StatsBase 1063.2 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 640.2 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 673.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceGPUArraysCoreExt 644.5 ms ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt 2091.2 ms ✓ HypergeometricFunctions 1154.4 ms ✓ DiffRules 2626.3 ms ✓ SplittablesBase 2199.4 ms ✓ Accessors → LinearAlgebraExt 1203.0 ms ✓ Accessors → TestExt 1455.5 ms ✓ Accessors → StaticArraysExt 848.2 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 1857.3 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 897.0 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 810.3 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2135.9 ms ✓ FilePathsBase → FilePathsBaseTestExt 1125.4 ms ✓ ChainRulesCore → ChainRulesCoreSparseArraysExt 2532.0 ms ✓ ZygoteRules 810.2 ms ✓ AbstractFFTs → AbstractFFTsChainRulesCoreExt 763.0 ms ✓ LinearMaps → LinearMapsChainRulesCoreExt 763.9 ms ✓ ADTypes → ADTypesChainRulesCoreExt 800.2 ms ✓ DifferentiationInterface → DifferentiationInterfaceChainRulesCoreExt 778.0 ms ✓ Distances → DistancesChainRulesCoreExt 3096.8 ms ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt 1289.1 ms ✓ StaticArrays → StaticArraysChainRulesCoreExt 737.7 ms ✓ ArrayInterface → ArrayInterfaceChainRulesCoreExt 4156.9 ms ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt 1380.4 ms ✓ FLoopsBase 8774.0 ms ✓ Graphs 8618.1 ms ✓ KernelAbstractions 6629.1 ms ✓ XGBoost 1129.7 ms ✓ CategoricalArrays → CategoricalArraysJSONExt 1625.5 ms ✓ WeakRefStrings 4208.2 ms ✓ JLD2 → UnPackExt 756.0 ms ✓ StructArrays → StructArraysAdaptExt 1161.1 ms ✓ StructArrays → StructArraysSparseArraysExt 1387.8 ms ✓ StructArrays → StructArraysStaticArraysExt 810.2 ms ✓ StructArrays → StructArraysLinearAlgebraExt 973.1 ms ✓ Accessors → StructArraysExt 81123.3 ms ✓ DataFrames 1190.8 ms ✓ PDMats → StatsBaseExt 1093.3 ms ✓ FiniteDiff 3095.1 ms ✓ StatsFuns 6903.9 ms ✓ ForwardDiff 6715.5 ms ✓ Roots 1515.4 ms ✓ BangBang 7765.2 ms ✓ MetaGraphsNext 1933.1 ms ✓ KernelAbstractions → SparseArraysExt 1434.6 ms ✓ KernelAbstractions → LinearAlgebraExt 1524.8 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 8525.9 ms ✓ MLJXGBoostInterface 27467.0 ms ✓ CSV 11778.3 ms ✓ ChainRules 1052.3 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1200.5 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 866.9 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 1240.1 ms ✓ StatsFuns → StatsFunsInverseFunctionsExt 3866.0 ms ✓ StatsFuns → StatsFunsChainRulesCoreExt 6410.0 ms ✓ StatsModels 8860.0 ms ✓ Distributions 1672.0 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1354.6 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 1099.2 ms ✓ Roots → RootsChainRulesCoreExt 1332.4 ms ✓ Roots → RootsForwardDiffExt 1445.5 ms ✓ BangBang → BangBangStaticArraysExt 4112.5 ms ✓ BangBang → BangBangDataFramesExt 1216.2 ms ✓ BangBang → BangBangChainRulesCoreExt 1160.2 ms ✓ BangBang → BangBangStructArraysExt 1310.3 ms ✓ BangBang → BangBangTablesExt 2624.1 ms ✓ MicroCollections 13855.5 ms ✓ NNlib 63829.7 ms ✓ Zygote 1374.2 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 2642.8 ms ✓ Distributions → DistributionsTestExt 2711.5 ms ✓ Distributions → DistributionsChainRulesCoreExt 6576.1 ms ✓ GLM 3989.2 ms ✓ HypothesisTests 3472.5 ms ✓ CausalTables 7009.1 ms ✓ ScientificTypes 1845.4 ms ✓ NLSolversBase 6227.4 ms ✓ Transducers 1858.2 ms ✓ NNlib → NNlibSpecialFunctionsExt 2079.9 ms ✓ NNlib → NNlibForwardDiffExt 6316.9 ms ✓ Zygote → ZygoteDistancesExt 3412.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceZygoteExt 4570.0 ms ✓ MLJGLMInterface 6613.2 ms ✓ CategoricalDistributions 2253.7 ms ✓ LineSearches 4116.1 ms ✓ Transducers → TransducersDataFramesExt 1374.4 ms ✓ Transducers → TransducersAdaptExt 14461.3 ms ✓ FLoops 22381.6 ms ✓ MLJModels 5837.1 ms ✓ Optim 16408.6 ms ✓ MLUtils 7639.6 ms ✓ MLJLinearModels 15222.7 ms ✓ StatisticalMeasuresBase 41007.9 ms ✓ StatisticalMeasures 16406.8 ms ✓ MLJBase 6101.4 ms ✓ StatisticalMeasures → ScientificTypesExt 7770.9 ms ✓ MLJBase → DefaultMeasuresExt 29387.4 ms ✓ TMLE 21014.2 ms ✓ TMLE → CausalTablesExt 20003.8 ms ✓ TMLE → DifferentiationInterfaceExt 21251.1 ms ✓ TMLE → JSONExt 20567.4 ms ✓ TMLE → YAMLExt 256 dependencies successfully precompiled in 1079 seconds. 41 already precompiled. Precompilation completed after 1132.83s ################################################################################ # Testing # Testing TMLE Status `/tmp/jl_w4SWC9/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [6af48e0c] CausalTables v1.3.4 [861a8166] Combinatorics v1.1.0 [a93c6f00] DataFrames v1.8.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [09f84164] HypothesisTests v0.11.6 ⌃ [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 ⌃ [a7f614a8] MLJBase v1.9.2 [caf8df21] MLJGLMInterface v0.3.7 [6ee0df7b] MLJLinearModels v0.10.1 ⌅ [d491faf4] MLJModels v0.17.9 [54119dfa] MLJXGBoostInterface v0.3.13 [bac558e1] OrderedCollections v1.8.1 [860ef19b] StableRNGs v1.0.4 ⌅ [a19d573c] StatisticalMeasures v0.2.1 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [8afdd2fb] TMLE v0.20.3 [ab02a1b2] TableOperations v1.2.0 [bd369af6] Tables v1.12.1 [ddb6d928] YAML v0.4.16 [e88e6eb3] Zygote v0.7.10 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_w4SWC9/Manifest.toml` Precompiling CUDA_Driver_jll... 1064.8 ms ✓ Preferences 760.6 ms ✓ JLLWrappers 2119.6 ms ✓ CUDA_Driver_jll 3 dependencies successfully precompiled in 7 seconds. 23 already precompiled. Precompiling CUDA_Runtime_jll... 4916.9 ms ✓ CUDA_Runtime_jll 1 dependency successfully precompiled in 8 seconds. 27 already precompiled. [47edcb42] ADTypes v1.21.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [a9b6321e] Atomix v1.1.2 [15f4f7f2] AutoHashEquals v2.2.0 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [fa961155] CEnum v0.5.0 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 ⌅ [af321ab8] CategoricalDistributions v0.1.15 [6af48e0c] CausalTables v1.3.4 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [187b0558] ConstructionBase 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v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Test expected_value | 3 3 1m01.5s Test Summary: | Pass Total Time Test counterfactualTreatment | 3 3 12.6s Test Summary: | Pass Total Time Test positivity_constraint & get_frequency_table | 28 28 32.0s Test Summary: | Pass Total Time Test selectcols | 5 5 1.3s Test Summary: | Pass Total Time supervised_learner_supports_weights | 7 7 4.2s Test Summary: | Pass Total Time Test check_inputs | 4 4 3.8s Test Summary: | Pass Total Time Test get_fluctuation_dataset | 6 6 9.9s Test Summary: | Pass Total Time Test choose_initial_dataset | 4 4 0.1s Test Summary: | Pass Total Time Test SCM | 17 17 4.1s Test Summary: | Pass Total Time Test StaticSCM | 9 9 0.2s Test Summary: | Pass Total Time Test BackdoorAdjustment | 16 16 4.4s Test Summary: | Pass Total Time Test TMLE.to_dict | 2 2 0.4s Test Summary: | Pass Total Time Test ConditionalDistribution | 4 4 0.5s Test Summary: | Pass Total Time Test CMRelevantFactors | 3 3 0.4s Test Summary: | Pass Total Time Test JointEstimand and ComposedEstimand | 7 7 6.3s fit_mlj_model supports weights: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:29 Expression: estimator(estimand, binary_dataset; cache = cache, verbosity = verbosity) Log Pattern: (:info, fit_log) Captured Logs: LogRecord(Info, "Estimating: P₀(Y | X₁, X₂)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/EtOhw/src/estimators.jl", 96, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "`wts` keyword argument is deprecated, use `weights` instead", StatsModels, :depwarn, (Ptr{Nothing} @0x000077f046fc7a73, :fit), "/home/pkgeval/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl", 88, Base.Pairs{Symbol, Any, Tuple{Symbol, Symbol}, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => fit(::Type{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, NTuple{6, Symbol}, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Float64}}}) at statsmodel.jl:88, :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.11/Test/src/logging.jl:166 [2] macro expansion @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:29 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [4] top-level scope @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:26 [ Info: Estimating: P₀(Y | X₁, X₂) fit_mlj_model supports weights: Log Test Failed at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:37 Expression: estimator(estimand, binary_dataset; cache = cache, verbosity = verbosity) Log Pattern: (:info, fit_log) Captured Logs: LogRecord(Info, "Estimating: P₀(Y | X₁, X₂)", TMLE, :estimators, :TMLE_68cc6cb4, "/home/pkgeval/.julia/packages/TMLE/EtOhw/src/estimators.jl", 96, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}()) LogRecord(Warn, "`wts` keyword argument is deprecated, use `weights` instead", StatsModels, :depwarn, (Ptr{Nothing} @0x000077f046fc7a73, :fit), "/home/pkgeval/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl", 88, Base.Pairs{Symbol, Any, Tuple{Symbol, Symbol}, @NamedTuple{caller::Base.StackTraces.StackFrame, maxlog::Int64}}(:caller => fit(::Type{GLM.GeneralizedLinearModel}, ::StatsModels.FormulaTerm{StatsModels.Term, Tuple{StatsModels.ConstantTerm{Int64}, StatsModels.Term, StatsModels.Term}}, ::@NamedTuple{X₁::Vector{Float64}, X₂::Vector{Float64}, y::Vector{Int64}}, ::Distributions.Bernoulli{Float64}, ::Vararg{Any}; contrasts::Dict{Symbol, Any}, kwargs::Base.Pairs{Symbol, Any, NTuple{6, Symbol}, @NamedTuple{offset::Vector{Float64}, maxiter::Int64, atol::Float64, rtol::Float64, minstepfac::Float64, wts::Vector{Float64}}}) at statsmodel.jl:88, :maxlog => 1)) Stacktrace: [1] record(ts::Test.DefaultTestSet, t::Test.LogTestFailure) @ Test /opt/julia/share/julia/stdlib/v1.11/Test/src/logging.jl:166 [2] macro expansion @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:37 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [4] top-level scope @ ~/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:26 [ Info: Estimating: P₀(Y | X₁, X₂) Test Summary: | Pass Fail Total Time fit_mlj_model supports weights | 2 2 4 1m26.2s Error During Test at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/runtests.jl:12 Test threw exception Expression: include(joinpath(TEST_DIR, "estimators_and_estimates.jl")) LoadError: Some tests did not pass: 2 passed, 2 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/estimators_and_estimates.jl:1 ERROR: LoadError: There was an error during testing in expression starting at /home/pkgeval/.julia/packages/TMLE/EtOhw/test/runtests.jl:6 Testing failed after 310.99s ERROR: LoadError: Package TMLE errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1493.1s: package has test failures