Package evaluation to test Stheno on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T07:51:04.004 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.53s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.11/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.12.2 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [ec8451be] + KernelFunctions v0.10.67 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.42s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 8250.9 ms ✓ Stheno 1 dependency successfully precompiled in 13 seconds. 151 already precompiled. Precompilation completed after 30.9s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_Mao9Q5/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.33 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Mao9Q5/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.12.2 [a9b6321e] Atomix v1.1.2 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [26cc04aa] FiniteDifferences v0.12.33 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.3.4 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 ⌅ [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.15 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.39 [ec8451be] KernelFunctions v0.10.67 [929cbde3] LLVM v9.4.4 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.9.0 [7e506255] ScopedValues v1.5.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.38+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling Documenter... 11345.0 ms ✓ Documenter 1 dependency successfully precompiled in 12 seconds. 26 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/9Q2Lq/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 27m46.9s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1681s / 99.1% 25.6GiB / 99.6% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 1143s 68.6% 1143s 17.6GiB 69.0% 17.6GiB addition 1 644s 38.6% 644s 10.7GiB 42.1% 10.7GiB Standardised Tests (correlated sum) 1 258s 15.5% 258s 6.00GiB 23.6% 6.00GiB adj_ad 9 14.1s 0.8% 1.56s 381MiB 1.5% 42.3MiB adj_fd 9 4.29s 0.3% 476ms 110MiB 0.4% 12.2MiB Correlated GPs 1 205s 12.3% 205s 247MiB 0.9% 247MiB Consistency Tests 1 76.8s 4.6% 76.8s 106MiB 0.4% 106MiB Standardised Tests (independent sum) 1 178s 10.7% 178s 4.46GiB 17.5% 4.46GiB adj_ad 9 23.5s 1.4% 2.61s 512MiB 2.0% 56.9MiB adj_fd 9 5.98s 0.4% 664ms 84.0MiB 0.3% 9.33MiB Verify mean / kernel numerically 1 3.35s 0.2% 3.35s 38.9MiB 0.1% 38.9MiB Consistency Tests 1 1.64s 0.1% 1.64s 14.3MiB 0.1% 14.3MiB product 1 253s 15.2% 253s 3.14GiB 12.3% 3.14GiB multiply by function 1 175s 10.5% 175s 1.75GiB 6.9% 1.75GiB Diff Tests 1 67.5s 4.0% 67.5s 1.28GiB 5.0% 1.28GiB adj_ad 9 23.1s 1.4% 2.56s 756MiB 2.9% 84.0MiB adj_fd 9 5.91s 0.4% 656ms 78.5MiB 0.3% 8.72MiB Consistency Tests 1 12.5s 0.8% 12.5s 86.2MiB 0.3% 86.2MiB multiply by constant 1 77.7s 4.7% 77.7s 1.39GiB 5.5% 1.39GiB Diff Tests 1 54.2s 3.3% 54.2s 1.33GiB 5.2% 1.33GiB adj_ad 9 15.8s 0.9% 1.75s 202MiB 0.8% 22.5MiB adj_fd 9 5.88s 0.4% 654ms 78.2MiB 0.3% 8.69MiB Consistency Tests 1 5.74s 0.3% 5.74s 21.3MiB 0.1% 21.3MiB GP mul errors 1 12.1ms 0.0% 12.1ms 36.3KiB 0.0% 36.3KiB compose 1 76.7s 4.6% 76.7s 1.79GiB 7.0% 1.79GiB general 1 50.3s 3.0% 50.3s 1.25GiB 4.9% 1.25GiB Diff Tests 1 43.8s 2.6% 43.8s 1.19GiB 4.7% 1.19GiB adj_ad 9 11.1s 0.7% 1.24s 593MiB 2.3% 65.9MiB adj_fd 9 5.48s 0.3% 609ms 89.1MiB 0.3% 9.90MiB Consistency Tests 1 5.06s 0.3% 5.06s 39.4MiB 0.2% 39.4MiB Stretch 1 16.7s 1.0% 16.7s 458MiB 1.8% 458MiB scalar stretch 1 15.9s 1.0% 15.9s 447MiB 1.7% 447MiB scalar input 1 14.4s 0.9% 14.4s 443MiB 1.7% 443MiB adj_fd 9 4.58s 0.3% 509ms 75.6MiB 0.3% 8.39MiB adj_ad 9 911ms 0.1% 101ms 31.0MiB 0.1% 3.45MiB vector input 1 1.52s 0.1% 1.52s 3.33MiB 0.0% 3.33MiB Vector stretch 1 632ms 0.0% 632ms 8.07MiB 0.0% 8.07MiB Matrix stretch 1 160ms 0.0% 160ms 2.85MiB 0.0% 2.85MiB Shift 1 6.40s 0.4% 6.40s 35.8MiB 0.1% 35.8MiB Shift{Vector{Float64}} 1 3.99s 0.2% 3.99s 12.7MiB 0.0% 12.7MiB Shift{Float64} 1 2.41s 0.1% 2.41s 23.1MiB 0.1% 23.1MiB Select 1 2.03s 0.1% 2.03s 29.7MiB 0.1% 29.7MiB evaluation 1 954ms 0.1% 954ms 18.5MiB 0.1% 18.5MiB idx isa Vector 1 574ms 0.0% 574ms 7.03MiB 0.0% 7.03MiB idx isa Integer 1 497ms 0.0% 497ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.22s 0.1% 1.22s 28.2MiB 0.1% 28.2MiB cross 1 31.0s 1.9% 31.0s 1.18GiB 4.6% 1.18GiB block arrays 1 17.7s 1.1% 17.7s 796MiB 3.0% 796MiB Stheno._collect ∘ _mortar 1 14.2s 0.9% 14.2s 678MiB 2.6% 678MiB BlockVector 1 8.03s 0.5% 8.03s 341MiB 1.3% 341MiB adj_ad 1 1.42s 0.1% 1.42s 82.2MiB 0.3% 82.2MiB adj_fd 1 676ms 0.0% 676ms 13.0MiB 0.0% 13.0MiB BlockMatrix 1 6.15s 0.4% 6.15s 336MiB 1.3% 336MiB adj_fd 1 790ms 0.0% 790ms 135MiB 0.5% 135MiB adj_ad 1 668ms 0.0% 668ms 33.3MiB 0.1% 33.3MiB fdm stuff 1 3.53s 0.2% 3.53s 118MiB 0.5% 118MiB Correctness tests 1 8.64s 0.5% 8.64s 358MiB 1.4% 358MiB Standardised Tests 1 4.64s 0.3% 4.64s 51.2MiB 0.2% 51.2MiB gp 1 245s 14.7% 245s 4.20GiB 16.5% 4.20GiB adj_ad 2 37.2s 2.2% 18.6s 740MiB 2.8% 370MiB sparse gp 1 25.9s 1.6% 25.9s 680MiB 2.6% 680MiB SparseFiniteGP inference 1 18.6s 1.1% 18.6s 505MiB 1.9% 505MiB SparseFiniteGP methods 1 6.74s 0.4% 6.74s 169MiB 0.6% 169MiB SparseFiniteGP Constructors 1 410ms 0.0% 410ms 3.73MiB 0.0% 3.73MiB gp 1 24.2s 1.5% 24.2s 236MiB 0.9% 236MiB GP 1 23.8s 1.4% 23.8s 234MiB 0.9% 234MiB independent GPs 1 330ms 0.0% 330ms 2.42MiB 0.0% 2.42MiB wrapped AbstractGP 1 15.1ms 0.0% 15.1ms 261KiB 0.0% 261KiB adj_fd 2 6.00s 0.4% 3.00s 111MiB 0.4% 55.3MiB derived_gp 1 149μs 0.0% 149μs 1.61KiB 0.0% 1.61KiB gaussian_process_probabilistic_programme 1 199s 11.9% 199s 2.09GiB 8.2% 2.09GiB External Consistency 1 49.0s 2.9% 49.0s 82.9MiB 0.3% 82.9MiB Zygote 1 37.3s 2.2% 37.3s 840MiB 3.2% 840MiB nested gppp 1 15.5s 0.9% 15.5s 75.5MiB 0.3% 75.5MiB split 1 623ms 0.0% 623ms 11.0MiB 0.0% 11.0MiB gppp macro 1 52.0ms 0.0% 52.0ms 514KiB 0.0% 514KiB doctests 1 70.3s 4.2% 70.3s 1.34GiB 5.3% 1.34GiB BlockData 1 9.00s 0.5% 9.00s 265MiB 1.0% 265MiB vcat(::GPPPInput...) 1 1.94s 0.1% 1.94s 89.0MiB 0.3% 89.0MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1710.59s PkgEval succeeded after 1765.01s