Package evaluation to test QuantumESPRESSOExpress on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T16:16:31.209 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.47s ################################################################################ # Installation # Installing QuantumESPRESSOExpress... Resolving package versions... Installed QuantumESPRESSOCommands ─ v0.6.4 Installed Conda ─────────────────── v1.10.3 Installed PyCall ────────────────── v1.96.4 Updating `~/.julia/environments/v1.11/Project.toml` [524a00d3] + QuantumESPRESSOExpress v0.5.9 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.21.0 ⌅ [df5135bc] + AbInitioSoftwareBase v0.6.5 [6b84a0a3] + AcuteML v0.11.3 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [861a8166] + Combinatorics v1.1.0 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [863f3e99] + Comonicon v1.0.8 [34da2185] + Compat v4.18.1 [8f4d0f93] + Conda v1.10.3 [5218b696] + Configurations v0.17.6 [187b0558] + ConstructionBase v1.6.0 [150eb455] + CoordinateTransformations v0.6.4 [5a653867] + Counters v0.3.4 [a8cc5b0e] + Crayons v4.1.1 ⌅ [3bff3928] + Crystallography v0.5.1 ⌅ [93b1d1cd] + CrystallographyBase v0.5.2 [9a962f9c] + DataAPI v1.16.0 ⌃ [a93c6f00] + DataFrames v1.3.6 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [0438fec6] + EquationsOfState v4.0.0 [1eaa2786] + EquationsOfStateOfSolids v0.4.2 [b12df14e] + Express v0.9.2 [55351af7] + ExproniconLite v0.10.14 [8f5d6c58] + EzXML v1.2.3 [5789e2e9] + FileIO v1.17.1 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 [59287772] + Formatting v0.4.3 ⌅ [f6369f11] + ForwardDiff v0.10.39 ⌅ [d9f16b24] + Functors v0.2.8 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [d25df0c9] + Inflate v0.1.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [ceb4388c] + IsURL v0.2.0 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.4.55 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [2ab3a3ac] + LogExpFunctions v0.3.29 ⌅ [2fda8390] + LsqFit v0.12.1 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 ⌅ [d41bc354] + NLSolversBase v7.10.0 [77ba4419] + NaNMath v1.1.3 [87e2bd06] + OptimBase v2.0.2 [bac558e1] + OrderedCollections v1.8.1 ⌃ [90014a1f] + PDMats v0.11.35 [9b87118b] + PackageCompiler v2.2.4 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 [3a141323] + PolynomialRoots v1.0.0 ⌅ [f27b6e38] + Polynomials v3.2.13 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v1.3.1 [1b2dc2e6] + Pseudopotentials v0.8.1 [43287f4e] + PtrArrays v1.3.0 [438e738f] + PyCall v1.96.4 [e44308e6] + PyFortran90Namelists v0.1.0 [5a1273f0] + PyQHA v0.1.1 [1fd47b50] + QuadGK v2.11.2 ⌅ [95228164] + QuantumESPRESSO v0.8.1 ⌅ [51b62caa] + QuantumESPRESSOBase v0.7.8 ⌅ [f713baf6] + QuantumESPRESSOCommands v0.6.4 [524a00d3] + QuantumESPRESSOExpress v0.5.9 ⌅ [a4e7ca57] + QuantumESPRESSOFormatter v0.3.9 ⌅ [a780ab42] + QuantumESPRESSOParser v0.3.12 [cbbcb084] + ReadableRegex v0.3.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 ⌅ [f2b01f46] + Roots v1.2.0 [6c6a2e73] + Scratch v1.3.0 [efcf1570] + Setfield v1.1.2 [699a6c99] + SimpleTraits v0.9.5 ⌅ [6a97d125] + SimpleWorkflows v0.16.2 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 ⌅ [f761d5c5] + Spglib v0.5.3 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.2 [69024149] + StringEncodings v0.3.7 ⌅ [4093c41a] + StructHelpers v0.1.5 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [410a4b4d] + Tricks v0.1.13 [0ca489f0] + TryCatch v0.1.1 [0fb2cfb0] + TypeTransform v0.1.3 [3a884ed6] + UnPack v1.0.2 [8030dd95] + UnifiedPseudopotentialFormat v0.4.1 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [81def892] + VersionParsing v1.3.0 [ddb6d928] + YAML v0.4.16 [1d63c593] + LLVMOpenMP_jll v18.1.8+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [02c8fc9c] + XML2_jll v2.15.1+0 ⌅ [ac4a9f1e] + spglib_jll v1.16.5+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building QuantumESPRESSOCommands → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/912cf2dc86d82cdf8c7f4524644969065118a407/build.log` Building Conda ──────────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9/build.log` Building PyCall ─────────────────→ `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/9816a3826b0ebf49ab4926e2b18842ad8b5c8f04/build.log` Installation completed after 153.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 23742.9 ms ✓ QuantumESPRESSOCommands ✗ PyQHA 15714.6 ms ✓ SimpleWorkflows 63506.7 ms ✓ UnifiedPseudopotentialFormat 17198.5 ms ? QuantumESPRESSOBase ✗ Express 5876.5 ms ? QuantumESPRESSOParser 55482.9 ms ? QuantumESPRESSOFormatter 4826.1 ms ? QuantumESPRESSO 8300.8 ms ? QuantumESPRESSOExpress 3 dependencies successfully precompiled in 372 seconds. 179 already precompiled. 5 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ QuantumESPRESSOBase │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSOExpress │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ UnifiedPseudopotentialFormat │ WARNING: method definition for #DataFrame#195 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. │ WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. └ ┌ QuantumESPRESSOParser │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSO │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSOFormatter │ [ Info: Installing f90nml via the Conda f90nml package... │ [ Info: Running `conda config --add channels conda-forge --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml --force` in root environment │ [ Info: Running `conda install -q -y f90nml` in root environment │ Channels: │ - conda-forge │ Platform: linux-64 │ Collecting package metadata (repodata.json): ...working... done │ Solving environment: ...working... done │ │ ## Package Plan ## │ │ environment location: /home/pkgeval/.julia/conda/3/x86_64 │ │ added / updated specs: │ - f90nml │ │ │ The following packages will be downloaded: │ │ package | build │ ---------------------------|----------------- │ f90nml-1.5 | pyhd8ed1ab_0 43 KB conda-forge │ ------------------------------------------------------------ │ Total: 43 KB │ │ The following NEW packages will be INSTALLED: │ │ f90nml conda-forge/noarch::f90nml-1.5-pyhd8ed1ab_0 │ │ │ Preparing transaction: ...working... done │ Verifying transaction: ...working... done │ Executing transaction: ...working... done │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: Express Failed to precompile Express [b12df14e-adf7-11e9-0606-d5813a258349] to "/home/pkgeval/.julia/compiled/v1.11/Express/jl_H2HJFS". WARNING: method definition for #DataFrame#195 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. [ Info: Running `conda config --set pip_interop_enabled true --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml` in root environment WARNING conda.cli.main_config:_set_key(456): Key pip_interop_enabled is an alias of prefix_data_interoperability; setting value with latter ERROR: LoadError: pip_interop is not enabled Use `Conda.pip_interop(true; [env::Environment=ROOTENV])` to enable Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] check_pip_interop @ ~/.julia/packages/Conda/05AVg/src/Conda.jl:637 [inlined] [3] pip(cmd::String, pkgs::String, env::String) @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:666 [4] top-level scope @ ~/.julia/packages/PyQHA/S6CTK/src/PyQHA.jl:18 [5] include @ ./Base.jl:562 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2924 [7] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/PyQHA/S6CTK/src/PyQHA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile PyQHA [5a1273f0-a906-4eb0-8178-7035f457d819] to "/home/pkgeval/.julia/compiled/v1.11/PyQHA/jl_qtJPQ9". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3217 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3741 [10] maybe_cachefile_lock @ ./loading.jl:3738 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ Express.QuasiHarmonicApproxWorkflow ~/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:1 [24] top-level scope @ ~/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:11 [25] include(mod::Module, _path::String) @ Base ./Base.jl:562 [26] include(x::String) @ Express ~/.julia/packages/Express/G2zCJ/src/Express.jl:1 [27] top-level scope @ ~/.julia/packages/Express/G2zCJ/src/Express.jl:41 [28] include @ ./Base.jl:562 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [30] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/actions.jl:2 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:1 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/Express.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 385.16s ################################################################################ # Testing # Testing QuantumESPRESSOExpress Status `/tmp/jl_dUiWAB/Project.toml` ⌅ [df5135bc] AbInitioSoftwareBase v0.6.5 [5218b696] Configurations v0.17.6 ⌅ [3bff3928] Crystallography v0.5.1 [1eaa2786] EquationsOfStateOfSolids v0.4.2 [b12df14e] Express v0.9.2 ⌅ [95228164] QuantumESPRESSO v0.8.1 [524a00d3] QuantumESPRESSOExpress v0.5.9 [efcf1570] Setfield v1.1.2 [8030dd95] UnifiedPseudopotentialFormat v0.4.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [ade2ca70] Dates v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_dUiWAB/Manifest.toml` [47edcb42] ADTypes v1.21.0 ⌅ [df5135bc] AbInitioSoftwareBase v0.6.5 [6b84a0a3] AcuteML v0.11.3 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [861a8166] Combinatorics v1.1.0 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [863f3e99] Comonicon v1.0.8 [34da2185] Compat v4.18.1 [8f4d0f93] Conda v1.10.3 [5218b696] Configurations v0.17.6 [187b0558] ConstructionBase v1.6.0 [150eb455] CoordinateTransformations v0.6.4 [5a653867] Counters v0.3.4 [a8cc5b0e] Crayons v4.1.1 ⌅ [3bff3928] Crystallography v0.5.1 ⌅ [93b1d1cd] CrystallographyBase v0.5.2 [9a962f9c] DataAPI v1.16.0 ⌃ [a93c6f00] DataFrames v1.3.6 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [0438fec6] EquationsOfState v4.0.0 [1eaa2786] EquationsOfStateOfSolids v0.4.2 [b12df14e] Express v0.9.2 [55351af7] ExproniconLite v0.10.14 [8f5d6c58] EzXML v1.2.3 [5789e2e9] FileIO v1.17.1 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 [59287772] Formatting v0.4.3 ⌅ [f6369f11] ForwardDiff v0.10.39 ⌅ [d9f16b24] Functors v0.2.8 [c27321d9] Glob v1.4.0 ⌃ [86223c79] Graphs v1.13.1 [34004b35] HypergeometricFunctions v0.3.28 [d25df0c9] Inflate v0.1.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [ceb4388c] IsURL v0.2.0 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.55 [692b3bcd] JLLWrappers v1.7.1 ⌅ [682c06a0] JSON v0.21.4 [2ab3a3ac] LogExpFunctions v0.3.29 ⌅ [2fda8390] LsqFit v0.12.1 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 ⌅ [d41bc354] NLSolversBase v7.10.0 [77ba4419] NaNMath v1.1.3 [87e2bd06] OptimBase v2.0.2 [bac558e1] OrderedCollections v1.8.1 ⌃ [90014a1f] PDMats v0.11.35 [9b87118b] PackageCompiler v2.2.4 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [3a141323] PolynomialRoots v1.0.0 ⌅ [f27b6e38] Polynomials v3.2.13 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 ⌅ [08abe8d2] PrettyTables v1.3.1 [1b2dc2e6] Pseudopotentials v0.8.1 [43287f4e] PtrArrays v1.3.0 [438e738f] PyCall v1.96.4 [e44308e6] PyFortran90Namelists v0.1.0 [5a1273f0] PyQHA v0.1.1 [1fd47b50] QuadGK v2.11.2 ⌅ [95228164] QuantumESPRESSO v0.8.1 ⌅ [51b62caa] QuantumESPRESSOBase v0.7.8 ⌅ [f713baf6] QuantumESPRESSOCommands v0.6.4 [524a00d3] QuantumESPRESSOExpress v0.5.9 ⌅ [a4e7ca57] QuantumESPRESSOFormatter v0.3.9 ⌅ [a780ab42] QuantumESPRESSOParser v0.3.12 [cbbcb084] ReadableRegex v0.3.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 ⌅ [f2b01f46] Roots v1.2.0 [6c6a2e73] Scratch v1.3.0 [efcf1570] Setfield v1.1.2 [699a6c99] SimpleTraits v0.9.5 ⌅ [6a97d125] SimpleWorkflows v0.16.2 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 ⌅ [f761d5c5] Spglib v0.5.3 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.2 [69024149] StringEncodings v0.3.7 ⌅ [4093c41a] StructHelpers v0.1.5 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [3bb67fe8] TranscodingStreams v0.11.3 [410a4b4d] Tricks v0.1.13 [0ca489f0] TryCatch v0.1.1 [0fb2cfb0] TypeTransform v0.1.3 [3a884ed6] UnPack v1.0.2 [8030dd95] UnifiedPseudopotentialFormat v0.4.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [81def892] VersionParsing v1.3.0 [ddb6d928] YAML v0.4.16 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [94ce4f54] Libiconv_jll v1.18.0+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [02c8fc9c] XML2_jll v2.15.1+0 ⌅ [ac4a9f1e] spglib_jll v1.16.5+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling QuantumESPRESSOExpress... ✗ PyQHA 57077.2 ms ✓ UnifiedPseudopotentialFormat 4470.6 ms ? QuantumESPRESSOBase ✗ Express 5831.9 ms ? QuantumESPRESSOParser 9990.8 ms ? QuantumESPRESSOFormatter 4829.3 ms ? QuantumESPRESSO Info Given QuantumESPRESSOExpress was explicitly requested, output will be shown live  WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 8377.2 ms ? QuantumESPRESSOExpress 1 dependency successfully precompiled in 202 seconds. 179 already precompiled. 5 dependencies failed but may be precompilable after restarting julia 6 dependencies had output during precompilation: ┌ QuantumESPRESSOBase │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSOExpress │ [Output was shown above] └ ┌ UnifiedPseudopotentialFormat │ WARNING: method definition for #DataFrame#195 at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/dataframe/dataframe.jl:397 declares type variable T but does not use it. │ WARNING: method definition for col_ordering at /home/pkgeval/.julia/packages/DataFrames/JZ7x5/src/abstractdataframe/sort.jl:145 declares type variable O but does not use it. └ ┌ QuantumESPRESSOParser │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSO │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ QuantumESPRESSOFormatter │ WARNING: Method definition (::Type{QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist})(QuantumESPRESSOBase.Inputs.PWscf.ControlNamelist) in module PWscf at /home/pkgeval/.julia/packages/QuantumESPRESSOBase/nH4ko/src/Inputs/PWscf/namelists.jl:134 overwritten at /home/pkgeval/.julia/packages/StructHelpers/hTI1b/src/StructHelpers.jl:37. │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ERROR: LoadError: The following 1 direct dependency failed to precompile: Express Failed to precompile Express [b12df14e-adf7-11e9-0606-d5813a258349] to "/home/pkgeval/.julia/compiled/v1.11/Express/jl_k2rEak". [ Info: Running `conda config --set pip_interop_enabled true --file /home/pkgeval/.julia/conda/3/x86_64/condarc-julia.yml` in root environment WARNING conda.cli.main_config:_set_key(456): Key pip_interop_enabled is an alias of prefix_data_interoperability; setting value with latter ERROR: LoadError: pip_interop is not enabled Use `Conda.pip_interop(true; [env::Environment=ROOTENV])` to enable Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] check_pip_interop @ ~/.julia/packages/Conda/05AVg/src/Conda.jl:637 [inlined] [3] pip(cmd::String, pkgs::String, env::String) @ Conda ~/.julia/packages/Conda/05AVg/src/Conda.jl:666 [4] top-level scope @ ~/.julia/packages/PyQHA/S6CTK/src/PyQHA.jl:18 [5] include @ ./Base.jl:562 [inlined] [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:2924 [7] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/PyQHA/S6CTK/src/PyQHA.jl:1 in expression starting at stdin:6 ERROR: LoadError: Failed to precompile PyQHA [5a1273f0-a906-4eb0-8178-7035f457d819] to "/home/pkgeval/.julia/compiled/v1.11/PyQHA/jl_GVAXhD". Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3217 [3] (::Base.var"#1110#1111"{Base.PkgId})() @ Base ./loading.jl:2579 [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95 [5] #mkpidlock#6 @ /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116 [7] #invokelatest#2 @ ./essentials.jl:1057 [inlined] [8] invokelatest @ ./essentials.jl:1052 [inlined] [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3741 [10] maybe_cachefile_lock @ ./loading.jl:3738 [inlined] [11] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2565 [12] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [13] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [14] invoke_in_world @ ./essentials.jl:1086 [inlined] [15] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [16] macro expansion @ ./loading.jl:2314 [inlined] [17] macro expansion @ ./lock.jl:273 [inlined] [18] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [19] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [20] invoke_in_world @ ./essentials.jl:1086 [inlined] [21] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [22] include(mod::Module, _path::String) @ Base ./Base.jl:562 [23] include(x::String) @ Express.QuasiHarmonicApproxWorkflow ~/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:1 [24] top-level scope @ ~/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:11 [25] include(mod::Module, _path::String) @ Base ./Base.jl:562 [26] include(x::String) @ Express ~/.julia/packages/Express/G2zCJ/src/Express.jl:1 [27] top-level scope @ ~/.julia/packages/Express/G2zCJ/src/Express.jl:41 [28] include @ ./Base.jl:562 [inlined] [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [30] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/actions.jl:2 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/QuasiHarmonicApproxWorkflow/QuasiHarmonicApproxWorkflow.jl:1 in expression starting at /home/pkgeval/.julia/packages/Express/G2zCJ/src/Express.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/QuantumESPRESSOExpress/Wl5Ji/test/runtests.jl:1 Testing failed after 207.39s ERROR: LoadError: Package QuantumESPRESSOExpress errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 776.79s: illegal method overwrites during precompilation