Package evaluation to test ProfileLikelihood on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T11:21:46.336 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.62s ################################################################################ # Installation # Installing ProfileLikelihood... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [3fca794e] + ProfileLikelihood v0.4.1 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [4fba245c] + ArrayInterface v7.22.0 [13072b0f] + AxisAlgorithms v1.1.0 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.6.2 [2a0fbf3d] + CPUSummary v0.2.7 [d360d2e6] + ChainRulesCore v1.26.0 ⌅ [ae650224] + ChunkSplitters v2.6.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [d38c429a] + Contour v0.6.3 [adafc99b] + CpuId v0.3.1 [2b5f629d] + DiffEqBase v6.199.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.18 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 ⌅ [a98d9a8b] + Interpolations v0.15.1 [3587e190] + InverseFunctions v0.1.17 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [10f19ff3] + LayoutPointers v0.1.17 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 [77ba4419] + NaNMath v1.1.3 [be0214bd] + NonlinearSolveBase v2.9.2 [6fe1bfb0] + OffsetArrays v1.17.0 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 [e4521ec6] + PolygonInbounds v0.2.0 ⌅ [d236fae5] + PreallocationTools v0.4.34 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [3fca794e] + ProfileLikelihood v0.4.1 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.44.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.134.0 ⌃ [19f34311] + SciMLJacobianOperators v0.1.11 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 ⌅ [727e6d20] + SimpleNonlinearSolve v1.12.5 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [781d530d] + TruncatedStacktraces v1.4.0 [efce3f68] + WoodburyMatrices v1.1.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 6.04s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/h9a3r/src/julia-1.11/activate_set.jl:78 Precompiling package dependencies... Precompiling project... 31435.3 ms ✓ SciMLBase 6210.5 ms ✓ NLSolversBase 5182.3 ms ✓ DataInterpolations 6053.0 ms ✓ NLopt → NLoptMathOptInterfaceExt 2093.2 ms ✓ PreallocationTools → PreallocationToolsSparseConnectivityTracerExt 252376.1 ms ✓ CairoMakie 492471.5 ms ✓ DomainSets → DomainSetsMakieExt 3235.8 ms ✓ SciMLBase → SciMLBaseMLStyleExt 2757.8 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 568246.3 ms ✓ SciMLBase → SciMLBaseMakieExt 5359.8 ms ✓ MovingBoundaryProblems1D 32513.5 ms ✓ OptimizationBase 7419.7 ms ✓ SciMLJacobianOperators 3007.8 ms ✓ SCCNonlinearSolve 78247.0 ms ✓ FiniteVolumeMethod 43872.9 ms ✓ DiffEqBase 2916.0 ms ✓ LineSearches 3268.4 ms ✓ DataInterpolations → DataInterpolationsChainRulesCoreExt 13201.8 ms ✓ SparseConnectivityTracer → SparseConnectivityTracerDataInterpolationsExt 202379.1 ms ✓ Symbolics 179973.8 ms ✓ LinearSolve 1514.9 ms ✓ OptimizationBase → OptimizationForwardDiffExt 809.7 ms ✓ OptimizationBase → OptimizationFiniteDiffExt 13724.7 ms ✓ Optimization 68872.6 ms ✓ LineSearch 16996.2 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 4905.9 ms ✓ DiffEqBase → DiffEqBaseUnitfulExt 12027.5 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 31507.8 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 3689.2 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt 12584.1 ms ✓ DiffEqCallbacks 11832.2 ms ✓ OrdinaryDiffEqCore 6697.9 ms ✓ Optim 121191.0 ms ✓ Symbolics → SymbolicsForwardDiffExt 10586.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt 226918.5 ms ✓ SparseDiffTools → SparseDiffToolsSymbolicsExt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 7 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 #818 at ./asyncevent.jl:311 jfptr_YY.818_67287.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000772ccb785780 Total snapshots: 277. Utilization: 0% ╎277 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var… ╎ 277 @Base/asyncevent.jl:145; _trywait(t::Timer) ╎ 277 @Base/condition.jl:125; wait ╎ 277 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S… ╎ 277 @Base/task.jl:1021; wait() 276╎ 277 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize… ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 task_done_hook at ./task.jl:694 jfptr_task_done_hook_66687.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_finish_task at /source/src/task.c:315 start_task at /source/src/task.c:1215 unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000077c78fb2cb00 Total snapshots: 427. Utilization: 0% ╎427 @Base/task.jl:694; task_done_hook(t::Task) ╎ 427 @Base/task.jl:1021; wait() 426╎ 427 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T… [7] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:34 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:156 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 poptask at ./task.jl:1012 wait at ./task.jl:1021 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait_readnb at ./stream.jl:416 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 eof at ./stream.jl:106 profile_printing_listener at ./Base.jl:582 eof at ./io.jl:472 [inlined] monitor_std#18 at ./precompilation.jl:746 #1192 at ./Base.jl:622 monitor_std at ./precompilation.jl:742 jfptr_YY.1192_76260.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 14324455 (Pool: 14323712; Big: 743); GC: 14 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") jfptr_monitor_std_45082.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 error at ./error.jl:35 #30 at ./precompilation.jl:907 #schedule#763 at ./task.jl:884 jfptr_YY.30_72004.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 49752539 (Pool: 49751318; Big: 1221); GC: 46 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #schedule#763 at ./task.jl:884 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 poptask at ./task.jl:1012 wait at ./task.jl:1021 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 uv_write at ./stream.jl:1081 poptask at ./task.jl:1012 unsafe_write at ./stream.jl:1154 wait at ./task.jl:1021 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x77c797956e96) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _atexit at ./initdefs.jl:454 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x772cfbb45096) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 _atexit at ./initdefs.jl:454 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2760.3s: test duration exceeded the time limit