Package evaluation to test PlanktonIndividuals on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T05:31:38.321 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.54s ################################################################################ # Installation # Installing PlanktonIndividuals... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [dfeb4ede] + PlanktonIndividuals v0.7.5 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [a9b6321e] + Atomix v1.1.2 [187b0558] + ConstructionBase v1.6.0 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [5789e2e9] + FileIO v1.17.1 [076d061b] + HashArrayMappedTries v0.2.0 [82899510] + IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] + JLD2 v0.5.15 [63c18a36] + KernelAbstractions v0.9.39 [1914dd2f] + MacroTools v0.5.16 [bac558e1] + OrderedCollections v1.8.1 [dfeb4ede] + PlanktonIndividuals v0.7.5 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [ae029012] + Requires v1.3.1 [7e506255] + ScopedValues v1.5.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [09ab397b] + StructArrays v0.7.2 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.29s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 69948.8 ms ✓ MeshArrays → MeshArraysJLD2Ext 71431.1 ms ✓ PlanktonIndividuals 2 dependencies successfully precompiled in 143 seconds. 109 already precompiled. Precompilation completed after 159.73s ################################################################################ # Testing # Testing PlanktonIndividuals Status `/tmp/jl_H4IxaW/Project.toml` [79e6a3ab] Adapt v4.4.0 [6e4b80f9] BenchmarkTools v1.6.3 [a2441757] Coverage v1.8.1 ⌅ [033835bb] JLD2 v0.5.15 [63c18a36] KernelAbstractions v0.9.39 [cb8c808f] MeshArrays v0.5.3 [dfeb4ede] PlanktonIndividuals v0.7.5 [10745b16] Statistics v1.11.1 [09ab397b] StructArrays v0.7.2 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_H4IxaW/Manifest.toml` [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [c7e460c6] ArgParse v1.2.0 [a9b6321e] Atomix v1.1.2 [6e4b80f9] BenchmarkTools v1.6.3 [d1d4a3ce] BitFlags v0.1.9 [81a5f4ea] CatViews v1.0.0 [944b1d66] CodecZlib v0.7.8 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [a2441757] Coverage v1.8.1 [c36e975a] CoverageTools v1.3.2 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [b4f34e82] Distances v0.10.12 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [5789e2e9] FileIO v1.17.1 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.0 [c27321d9] Glob v1.4.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.5.15 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [63c18a36] KernelAbstractions v0.9.39 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [cb8c808f] MeshArrays v0.5.3 [b8a86587] NearestNeighbors v0.4.26 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [dfeb4ede] PlanktonIndividuals v0.7.5 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [09ab397b] StructArrays v0.7.2 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [b718987f] TextWrap v1.0.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [013be700] UnsafeAtomics v0.3.0 [458c3c95] OpenSSL_jll v3.5.4+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling MeshArrays... 9259.0 ms ✓ NearestNeighbors 8562.9 ms ✓ MeshArrays 2 dependencies successfully precompiled in 18 seconds. 51 already precompiled. Precompiling MeshArraysJLD2Ext... 7133.1 ms ✓ MeshArrays → MeshArraysJLD2Ext 1 dependency successfully precompiled in 8 seconds. 61 already precompiled. RegularRectilinearGrid{Float32, Periodic, Periodic, Bounded} domain: x ∈ [0.0, 12.0], y ∈ [0.0, 12.0], z ∈ [0.0, -8.0] topology (Tx, Ty, Tz): (Periodic, Periodic, Bounded) resolution (Nx, Ny, Nz): (4, 6, 2) halo size (Hx, Hy, Hz): (2, 2, 2) grid spacing (Δx, Δy, Δz): 3.0, 2.0, [min=4.0, max=4.0]) Latitude Longitude Grid: Error During Test at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/grid_test.jl:149 Got exception outside of a @test UndefVarError: `GRID_LL360_download` not defined in `MeshArrays` Stacktrace: [1] test_load_lat_lon_grid() @ Main ~/.julia/packages/PlanktonIndividuals/tRgat/test/grid_test.jl:85 [2] macro expansion @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/grid_test.jl:151 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [4] macro expansion @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/grid_test.jl:150 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [6] top-level scope @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/grid_test.jl:134 [7] include(fname::String) @ Main ./sysimg.jl:38 [8] macro expansion @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/runtests.jl:6 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [10] macro expansion @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/runtests.jl:6 [inlined] [11] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [12] top-level scope @ ~/.julia/packages/PlanktonIndividuals/tRgat/test/runtests.jl:5 [13] include(fname::String) @ Main ./sysimg.jl:38 [14] top-level scope @ none:6 WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_3D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7. WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_2D_test.jl:7 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8. WARNING: Method definition tot_mass(Any, Any) in module Main at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_1D_test.jl:8 overwritten at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/example_0D_test.jl:11. Test Summary: | Pass Error Total Time PlanktonIndividuals | 100 1 101 13m43.8s Unit tests | 96 1 97 9m16.1s Grids | 49 1 50 53.9s Rectilinear Grid | 40 40 29.0s Latitude Longitude Grid | 9 1 10 24.8s Fields | 37 37 2m18.4s Parameterss | 4 4 2.4s Output | 6 6 5m32.7s Example tests | 4 4 4m27.7s ERROR: LoadError: Some tests did not pass: 100 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/PlanktonIndividuals/tRgat/test/runtests.jl:4 Testing failed after 837.92s ERROR: LoadError: Package PlanktonIndividuals errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1046.84s: package tests unexpectedly errored