Package evaluation to test Oceananigans on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T10:36:06.337


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.11`

Set-up completed after 8.1s


################################################################################
# Installation
#

Installing Oceananigans...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [9e8cae18] + Oceananigans v0.104.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [621f4979] + AbstractFFTs v1.5.0
  [79e6a3ab] + Adapt v4.4.0
  [a9b6321e] + Atomix v1.1.2
  [0b6fb165] + ChunkCodecCore v1.0.1
  [4c0bbee4] + ChunkCodecLibZlib v1.0.0
  [55437552] + ChunkCodecLibZstd v1.0.0
  [187b0558] + ConstructionBase v1.6.0
  [a8cc5b0e] + Crayons v4.1.1
  [7445602f] + CubedSphere v0.3.4
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [b4f34e82] + Distances v0.10.12
  [ffbed154] + DocStringExtensions v0.9.5
  [21656369] + ExpressionExplorer v1.1.3
  [7a1cc6ca] + FFTW v1.10.0
  [5789e2e9] + FileIO v1.17.1
  [46192b85] + GPUArraysCore v0.2.0
  [c27321d9] + Glob v1.4.0
  [076d061b] + HashArrayMappedTries v0.2.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [033835bb] + JLD2 v0.6.3
  [692b3bcd] + JLLWrappers v1.7.1
  [63c18a36] + KernelAbstractions v0.9.39
  [ba0b0d4f] + Krylov v0.10.3
  [da04e1cc] + MPI v0.20.23
  [3da0fdf6] + MPIPreferences v0.1.11
  [1914dd2f] + MacroTools v0.5.16
  [46d2c3a1] + MuladdMacro v0.2.4
  [9e8cae18] + Oceananigans v0.104.1
  [6fe1bfb0] + OffsetArrays v1.17.0
  [bac558e1] + OrderedCollections v1.8.1
  [eebad327] + PkgVersion v0.3.3
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.5.1
  [94ee1d12] + Quaternions v0.7.7
  [a3311ec8] + ReactantCore v0.1.16
  [c1ae055f] + RealDot v0.1.0
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [6038ab10] + Rotations v1.7.1
  [7e506255] + ScopedValues v1.5.0
  [d496a93d] + SeawaterPolynomials v0.3.10
  [90137ffa] + StaticArrays v1.9.16
  [1e83bf80] + StaticArraysCore v1.4.4
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.8.0
  [09ab397b] + StructArrays v0.7.2
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [6aa5eb33] + TaylorSeries v0.20.10
  [013be700] + UnsafeAtomics v0.3.0
  [f5851436] + FFTW_jll v3.3.11+0
  [e33a78d0] + Hwloc_jll v2.12.2+0
  [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0
  [94ce4f54] + Libiconv_jll v1.18.0+0
  [856f044c] + MKL_jll v2025.2.0+0
  [7cb0a576] + MPICH_jll v4.3.2+0
  [f1f71cc9] + MPItrampoline_jll v5.5.4+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.9+0
⌅ [02c8fc9c] + XML2_jll v2.13.9+0
  [a65dc6b1] + Xorg_libpciaccess_jll v0.18.1+0
  [3161d3a3] + Zstd_jll v1.5.7+1
  [1317d2d5] + oneTBB_jll v2022.0.0+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [4536629a] + OpenBLAS_jll v0.3.27+1
  [bea87d4a] + SuiteSparse_jll v7.7.0+0
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.11.0+0
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 7.89s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
 163868.6 ms  ✓ Oceananigans → OceananigansEnzymeExt
  38963.0 ms  ✓ oneAPI
           ✗ CUDA → SpecialFunctionsExt
           ✗ Atomix → AtomixCUDAExt
           ✗ CUDA → ChainRulesCoreExt
           ✗ CUDA → EnzymeCoreExt
           ✗ MPI → CUDAExt
           ✗ Oceananigans → OceananigansCUDAExt
 151087.4 ms  ✓ Oceananigans → OceananigansMetalExt
  63004.3 ms  ✓ MPI → AMDGPUExt
  17902.1 ms  ✓ Oceananigans → OceananigansAMDGPUExt
  69083.0 ms  ✓ Reactant → ReactantMPIExt
  67441.5 ms  ✓ Reactant → ReactantRandom123Ext
 654883.3 ms  ✓ Reactant → ReactantPythonCallExt
  75052.7 ms  ✓ Reactant → ReactantOffsetArraysExt
 243380.6 ms  ✓ Oceananigans → OceananigansReactantExt
 101085.1 ms  ✓ Oceananigans → OceananigansXESMFExt
 133778.4 ms  ✓ Oceananigans → OceananigansNCDatasetsExt
           ✗ Reactant → ReactantCUDAExt
 135821.7 ms  ✓ Reactant → ReactantFFTWExt

======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 31 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#818 at ./asyncevent.jl:311
jfptr_YY.818_67287.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
start_task at /source/src/task.c:1204
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x00007884400d8fb0 Total snapshots: 289. Utilization: 0%
   ╎289 @Base/asyncevent.jl:311; (::Base.var"#818#819"{FileWatching.Pidfile.var…
   ╎ 289 @Base/asyncevent.jl:145; _trywait(t::Timer)
   ╎  289 @Base/condition.jl:125; wait
   ╎   289 @Base/condition.jl:130; wait(c::Base.GenericCondition{Base.Threads.S…
   ╎    289 @Base/task.jl:1021; wait()
288╎     289 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronize…


======================================================================================
Information request received. A stacktrace will print followed by a 1.0 second profile
======================================================================================

cmd: /opt/julia/bin/julia 1 running 0 of 1

signal (10): User defined signal 1
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
task_done_hook at ./task.jl:694
jfptr_task_done_hook_66687.1 at /opt/julia/lib/julia/sys.so (unknown line)
_jl_invoke at /source/src/gf.c:2951 [inlined]
ijl_apply_generic at /source/src/gf.c:3128
jl_apply at /source/src/julia.h:2157 [inlined]
jl_finish_task at /source/src/task.c:315
start_task at /source/src/task.c:1215
unknown function (ip: (nil))

==============================================================
Profile collected. A report will print at the next yield point
==============================================================

┌ Warning: There were no samples collected in one or more groups.
│ This may be due to idle threads, or you may need to run your
│ program longer (perhaps by running it multiple times),
│ or adjust the delay between samples with `Profile.init()`.
└ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240
Overhead ╎ [+additional indent] Count File:Line; Function
=========================================================
Thread 1 Task 0x000075d4de32f3a0 Total snapshots: 363. Utilization: 0%
   ╎363 @Base/task.jl:694; task_done_hook(t::Task)
   ╎ 363 @Base/task.jl:1021; wait()
362╎  363 @Base/task.jl:1012; poptask(W::Base.IntrusiveLinkedListSynchronized{T…


[31] signal 15: Terminated
in expression starting at /PkgEval.jl/scripts/precompile.jl:34
epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line)
uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404
uv_run at /workspace/srcdir/libuv/src/unix/core.c:430
ijl_task_get_next at /source/src/scheduler.c:522
poptask at ./task.jl:1012
wait at ./task.jl:1021
#wait#733 at ./condition.jl:130
wait at ./condition.jl:125 [inlined]
_trywait at ./asyncevent.jl:145
#818 at ./asyncevent.jl:311

PkgEval terminated after 2773.02s: test duration exceeded the time limit