Package evaluation to test NeighbourLists on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T04:20:43.096 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 6.15s ################################################################################ # Installation # Installing NeighbourLists... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [2fcf5ba9] + NeighbourLists v0.6.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [6a4ca0a5] + AcceleratedKernels v0.4.3 [79e6a3ab] + Adapt v4.4.0 [dce04be8] + ArgCheck v2.5.0 [a9b6321e] + Atomix v1.1.2 [6e4b80f9] + BenchmarkTools v1.6.3 [34da2185] + Compat v4.18.1 [46192b85] + GPUArraysCore v0.2.0 [682c06a0] + JSON v1.4.0 [63c18a36] + KernelAbstractions v0.9.39 [1914dd2f] + MacroTools v0.5.16 [2fcf5ba9] + NeighbourLists v0.6.0 [69de0a69] + Parsers v2.8.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [ec057cc2] + StructUtils v2.6.2 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 13399.4 ms ✓ NeighbourLists ✗ CUDA → SpecialFunctionsExt ✗ Atomix → AtomixCUDAExt ✗ NeighbourLists → NeighbourListsCUDAExt 8505.6 ms ✓ NeighbourLists → NeighbourListsAtomsBaseExt 2 dependencies successfully precompiled in 84 seconds. 170 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: SpecialFunctionsExt Failed to precompile SpecialFunctionsExt [1285c0f1-ff9f-5867-b66e-0f359bcf09ba] to "/home/pkgeval/.julia/compiled/v1.11/SpecialFunctionsExt/jl_IcuL0q". julia: /source/src/gc.c:1315: jl_gc_pool_alloc_inner: Assertion `__extension__ ({ __auto_type __atomic_load_ptr = (&ptls->gc_state); __typeof__ (*__atomic_load_ptr) __atomic_load_tmp; __atomic_load (__atomic_load_ptr, &__atomic_load_tmp, (memory_order_relaxed)); __atomic_load_tmp; }) == 0' failed. [61] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/CUDA/FJf6p/ext/SpecialFunctionsExt.jl:5 unknown function (ip: 0x790339a2febc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7903399cb394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_gc_pool_alloc_inner at /source/src/gc.c:1315 ijl_alloc_string at /source/src/array.c:314 [inlined] ijl_alloc_string at /source/src/array.c:297 ijl_pchar_to_string at /source/src/array.c:330 ijl_vexceptionf at /source/src/rtutils.c:64 ijl_errorf at /source/src/rtutils.c:77 ijl_load_dynamic_library at /source/src/dlload.c:388 jl_get_library_ at /source/src/runtime_ccall.cpp:45 [inlined] jl_get_library_ at /source/src/runtime_ccall.cpp:29 ijl_lazy_load_and_lookup at /source/src/runtime_ccall.cpp:73 macro expansion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:143 [inlined] macro expansion at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:3853 [inlined] #174 at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:34 unknown function (ip: 0x790330f250cf) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x790330f24f0c) unknown function (ip: 0x790330f24e90) check at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:35 unknown function (ip: 0x790330f24de2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x790330f24d5c) unknown function (ip: 0x790330f24cdb) cuDriverGetVersion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:33 unknown function (ip: 0x790330f24c12) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x790330f24b6c) unknown function (ip: 0x790330f24b00) set_driver_version at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/version.jl:8 unknown function (ip: 0x790330f24a5a) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x790330f2453c) unknown function (ip: 0x790330f2422c) __init__ at /home/pkgeval/.julia/packages/CUDA/FJf6p/src/initialization.jl:62 unknown function (ip: 0x790330f24186) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_module_run_initializer at /source/src/toplevel.c:76 run_module_init at ./loading.jl:1378 register_restored_modules at ./loading.jl:1366 #_include_from_serialized#1082 at ./loading.jl:1254 _include_from_serialized at ./loading.jl:1210 [inlined] _include_from_serialized at ./loading.jl:1210 [inlined] #_require_search_from_serialized#1105 at ./loading.jl:2057 _require_search_from_serialized at ./loading.jl:1969 jfptr__require_search_from_serialized_45031.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _require at ./loading.jl:2527 __require_prelocked at ./loading.jl:2388 jfptr___require_prelocked_71351.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] _require_prelocked at ./loading.jl:2375 macro expansion at ./loading.jl:2314 [inlined] macro expansion at ./lock.jl:273 [inlined] __require at ./loading.jl:2271 jfptr___require_71282.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] require at ./loading.jl:2260 jfptr_require_71279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] call_require at /source/src/toplevel.c:486 [inlined] eval_import_path at /source/src/toplevel.c:523 jl_toplevel_eval_flex at /source/src/toplevel.c:759 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:743 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 [inlined] include_package_for_output at ./loading.jl:2924 jfptr_include_package_for_output_72244.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 include_string at ./loading.jl:2787 [inlined] exec_options at ./client.jl:314 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7903399cc249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 4110460 (Pool: 4110282; Big: 178); GC: 8 NeighbourListsCUDAExt Failed to precompile NeighbourListsCUDAExt [724b157d-d62f-5f4c-841c-029f775b16a4] to "/home/pkgeval/.julia/compiled/v1.11/NeighbourListsCUDAExt/jl_RTRxzx". julia: /source/src/gc.c:1315: jl_gc_pool_alloc_inner: Assertion `__extension__ ({ __auto_type __atomic_load_ptr = (&ptls->gc_state); __typeof__ (*__atomic_load_ptr) __atomic_load_tmp; __atomic_load (__atomic_load_ptr, &__atomic_load_tmp, (memory_order_relaxed)); __atomic_load_tmp; }) == 0' failed. [87] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/NeighbourLists/wX4iR/ext/NeighbourListsCUDAExt.jl:11 unknown function (ip: 0x7ec9c97c8ebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7ec9c9764394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_gc_pool_alloc_inner at /source/src/gc.c:1315 ijl_alloc_string at /source/src/array.c:314 [inlined] ijl_alloc_string at /source/src/array.c:297 ijl_pchar_to_string at /source/src/array.c:330 ijl_vexceptionf at /source/src/rtutils.c:64 ijl_errorf at /source/src/rtutils.c:77 ijl_load_dynamic_library at /source/src/dlload.c:388 jl_get_library_ at /source/src/runtime_ccall.cpp:45 [inlined] jl_get_library_ at /source/src/runtime_ccall.cpp:29 ijl_lazy_load_and_lookup at /source/src/runtime_ccall.cpp:73 macro expansion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:143 [inlined] macro expansion at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:3853 [inlined] #174 at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:34 unknown function (ip: 0x7ec9c0d3020f) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7ec9c0d3004c) unknown function (ip: 0x7ec9c0d2ffd0) check at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:35 unknown function (ip: 0x7ec9c0d2ff22) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7ec9c0d2fe9c) unknown function (ip: 0x7ec9c0d2fe1b) cuDriverGetVersion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:33 unknown function (ip: 0x7ec9c0d2fd52) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7ec9c0d2fcac) unknown function (ip: 0x7ec9c0d2fc40) set_driver_version at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/version.jl:8 unknown function (ip: 0x7ec9c0d2fb9a) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7ec9c0d2f67c) unknown function (ip: 0x7ec9c0d2f36c) __init__ at /home/pkgeval/.julia/packages/CUDA/FJf6p/src/initialization.jl:62 unknown function (ip: 0x7ec9c0d2f2c6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_module_run_initializer at /source/src/toplevel.c:76 run_module_init at ./loading.jl:1378 register_restored_modules at ./loading.jl:1366 #_include_from_serialized#1082 at ./loading.jl:1254 _include_from_serialized at ./loading.jl:1210 [inlined] _include_from_serialized at ./loading.jl:1210 [inlined] #_require_search_from_serialized#1105 at ./loading.jl:2057 _require_search_from_serialized at ./loading.jl:1969 jfptr__require_search_from_serialized_45031.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _require at ./loading.jl:2527 __require_prelocked at ./loading.jl:2388 jfptr___require_prelocked_71351.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] _require_prelocked at ./loading.jl:2375 macro expansion at ./loading.jl:2314 [inlined] macro expansion at ./lock.jl:273 [inlined] __require at ./loading.jl:2271 jfptr___require_71282.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] require at ./loading.jl:2260 jfptr_require_71279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] call_require at /source/src/toplevel.c:486 [inlined] eval_import_path at /source/src/toplevel.c:523 jl_toplevel_eval_flex at /source/src/toplevel.c:759 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:743 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 [inlined] include_package_for_output at ./loading.jl:2924 jfptr_include_package_for_output_72244.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 include_string at ./loading.jl:2787 [inlined] exec_options at ./client.jl:314 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ec9c9765249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 4312012 (Pool: 4311835; Big: 177); GC: 8 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 100.44s ################################################################################ # Testing # Testing NeighbourLists Status `/tmp/jl_xGrh5B/Project.toml` [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [052768ef] CUDA v5.9.6 [992eb4ea] CondaPkg v0.2.33 [b4f34e82] Distances v0.10.12 [f6369f11] ForwardDiff v1.3.1 [b8a86587] NearestNeighbors v0.4.26 [2fcf5ba9] NeighbourLists v0.6.0 `~/.julia/packages/NeighbourLists/wX4iR` [6099a3de] PythonCall v0.9.31 [90137ffa] StaticArrays v1.9.16 [1986cc42] Unitful v1.27.0 [37e2e46d] LinearAlgebra v1.11.0 [de0858da] Printf v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_xGrh5B/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [6a4ca0a5] AcceleratedKernels v0.4.3 [79e6a3ab] Adapt v4.4.0 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [1692102d] AtomsIO v0.3.0 [ab4f0b2a] BFloat16s v0.6.1 [6e4b80f9] BenchmarkTools v1.6.3 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 [052768ef] CUDA v5.9.6 [1af6417a] CUDA_Runtime_Discovery v1.0.0 [46823bd8] Chemfiles v0.10.43 [944b1d66] CodecZlib v0.7.8 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [992eb4ea] CondaPkg v0.2.33 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [352459e4] ExtXYZ v0.2.2 [f6369f11] ForwardDiff v1.3.1 [0c68f7d7] GPUArrays v11.3.4 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.8.0 [096a3bc2] GPUToolbox v1.0.0 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [0f8b85d8] JSON3 v1.14.3 [63c18a36] KernelAbstractions v0.9.39 [929cbde3] LLVM v9.4.4 [8b046642] LLVMLoopInfo v1.0.0 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.3 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [1914dd2f] MacroTools v0.5.16 [739be429] MbedTLS v1.1.9 [0b3b1443] MicroMamba v0.1.14 [e1d29d7a] Missings v1.2.0 [5da4648a] NVTX v1.0.3 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.26 [2fcf5ba9] NeighbourLists v0.6.0 `~/.julia/packages/NeighbourLists/wX4iR` [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 [fa939f87] Pidfile v1.3.0 [2dfb63ee] PooledArrays v1.4.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [08abe8d2] PrettyTables v3.1.2 [30e472fa] PubChemCrawler v1.4.0 [6099a3de] PythonCall v0.9.31 [74087812] Random123 v1.7.1 [e6cf234a] RandomNumbers v1.6.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e506255] ScopedValues v1.5.0 [6c6a2e73] Scratch v1.3.0 [91c51154] SentinelArrays v1.4.9 [777ac1f9] SimpleBufferStream v1.2.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [892a3eda] StringManipulation v0.4.2 [856f2bd8] StructTypes v1.11.0 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [013be700] UnsafeAtomics v0.3.0 [e17b2a0c] UnsafePointers v1.0.0 [d1e2174e] CUDA_Compiler_jll v0.4.1+1 [4ee394cb] CUDA_Driver_jll v13.1.0+2 ⌅ [76a88914] CUDA_Runtime_jll v0.19.2+0 [78a364fa] Chemfiles_jll v0.10.4+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [e98f9f5b] NVTX_jll v3.2.2+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [02c8fc9c] XML2_jll v2.15.1+0 [1e29f10c] demumble_jll v1.3.0+0 [6ecdc6fc] extxyz_jll v0.1.3+0 [cdc7adba] libcleri_jll v0.12.1+3 ⌅ [f8abcde7] micromamba_jll v1.5.12+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... julia: /source/src/gc.c:1315: jl_gc_pool_alloc_inner: Assertion `__extension__ ({ __auto_type __atomic_load_ptr = (&ptls->gc_state); __typeof__ (*__atomic_load_ptr) __atomic_load_tmp; __atomic_load (__atomic_load_ptr, &__atomic_load_tmp, (memory_order_relaxed)); __atomic_load_tmp; }) == 0' failed. [150] signal 6 (-6): Aborted in expression starting at /home/pkgeval/.julia/packages/NeighbourLists/wX4iR/test/runtests.jl:17 unknown function (ip: 0x7f166bf7cebc) gsignal at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) abort at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x7f166bf18394) __assert_fail at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_gc_pool_alloc_inner at /source/src/gc.c:1315 ijl_alloc_string at /source/src/array.c:314 [inlined] ijl_alloc_string at /source/src/array.c:297 ijl_pchar_to_string at /source/src/array.c:330 ijl_vexceptionf at /source/src/rtutils.c:64 ijl_errorf at /source/src/rtutils.c:77 ijl_load_dynamic_library at /source/src/dlload.c:388 jl_get_library_ at /source/src/runtime_ccall.cpp:45 [inlined] jl_get_library_ at /source/src/runtime_ccall.cpp:29 ijl_lazy_load_and_lookup at /source/src/runtime_ccall.cpp:73 macro expansion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:143 [inlined] macro expansion at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:3853 [inlined] #174 at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:34 unknown function (ip: 0x7f166a91e70e) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7f166a91e5d9) unknown function (ip: 0x7f166a91e577) check at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/libcuda.jl:35 unknown function (ip: 0x7f166a91e4d2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7f166a91e479) unknown function (ip: 0x7f166a91e41b) cuDriverGetVersion at /home/pkgeval/.julia/packages/GPUToolbox/JLBB1/src/ccalls.jl:33 unknown function (ip: 0x7f166a91e372) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7f166a91e2d9) unknown function (ip: 0x7f166a91e27f) set_driver_version at /home/pkgeval/.julia/packages/CUDA/FJf6p/lib/cudadrv/version.jl:8 unknown function (ip: 0x7f166a91e1e7) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 unknown function (ip: 0x7f166a91dec9) unknown function (ip: 0x7f166a91dc20) __init__ at /home/pkgeval/.julia/packages/CUDA/FJf6p/src/initialization.jl:62 unknown function (ip: 0x7f166a91db93) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_module_run_initializer at /source/src/toplevel.c:76 run_module_init at ./loading.jl:1378 register_restored_modules at ./loading.jl:1366 #_include_from_serialized#1082 at ./loading.jl:1254 _include_from_serialized at ./loading.jl:1210 [inlined] _include_from_serialized at ./loading.jl:1210 [inlined] #_require_search_from_serialized#1105 at ./loading.jl:2057 _require_search_from_serialized at ./loading.jl:1969 jfptr__require_search_from_serialized_45031.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _require at ./loading.jl:2527 __require_prelocked at ./loading.jl:2388 jfptr___require_prelocked_71351.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] _require_prelocked at ./loading.jl:2375 macro expansion at ./loading.jl:2314 [inlined] macro expansion at ./lock.jl:273 [inlined] __require at ./loading.jl:2271 jfptr___require_71282.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] require at ./loading.jl:2260 [inlined] init_gpu_backend! at /home/pkgeval/.julia/packages/NeighbourLists/wX4iR/test/test_utils.jl:154 unknown function (ip: 0x7f166a90631f) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./sysimg.jl:38 unknown function (ip: 0x7f166a900082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7f166bf19249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) Allocations: 4859725 (Pool: 4859544; Big: 181); GC: 8 Testing failed after 39.99s ERROR: LoadError: Package NeighbourLists errored during testing (received signal: 6) Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval crashed after 175.28s: the process was aborted