Package evaluation to test MetidaBioeq on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T16:11:16.824 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 11.77s ################################################################################ # Installation # Installing MetidaBioeq... Resolving package versions... Installed NLopt_jll ─────────────────── v2.10.0+0 Installed IrrationalConstants ───────── v0.2.6 Installed Crayons ───────────────────── v4.1.1 Installed Adapt ─────────────────────── v4.4.0 Installed DiffRules ─────────────────── v1.15.1 Installed Scratch ───────────────────── v1.3.0 Installed SciMLPublic ───────────────── v1.0.1 Installed Rmath ─────────────────────── v0.9.0 Installed JSON3 ─────────────────────── v1.14.3 Installed Arrow ─────────────────────── v2.8.1 Installed HypergeometricFunctions ───── v0.3.28 Installed BandedMatrices ────────────── v1.11.0 Installed Metida ────────────────────── v0.16.4 Installed StatsFuns ─────────────────── v1.5.2 Installed Zstd_jll ──────────────────── v1.5.7+1 Installed Preferences ───────────────── v1.5.1 Installed CpuId ─────────────────────── v0.3.1 Installed NLopt ─────────────────────── v1.2.1 Installed PtrArrays ─────────────────── v1.3.0 Installed PrettyTables ──────────────── v2.4.0 Installed Mocking ───────────────────── v0.8.1 Installed TableTraits ───────────────── v1.0.1 Installed PositiveFactorizations ────── v0.2.4 Installed DiffResults ───────────────── v1.1.0 Installed ADTypes ───────────────────── v1.21.0 Installed TypedTables ───────────────── v1.4.6 Installed SpecialFunctions ──────────── v2.6.1 Installed FastGaussQuadrature ───────── v1.1.0 Installed Parsers ───────────────────── v2.8.3 Installed CPUSummary ────────────────── v0.2.7 Installed SentinelArrays ────────────── v1.4.9 Installed Tables ────────────────────── v1.12.1 Installed CategoricalArrays ─────────── v0.10.9 Installed TimeZones ─────────────────── v1.22.2 Installed MetidaBioeq ───────────────── v0.2.9 Installed PDMats ────────────────────── v0.11.37 Installed Optim ─────────────────────── v1.13.3 Installed ArrowTypes ────────────────── v2.3.0 Installed Dictionaries ──────────────── v0.4.6 Installed IfElse ────────────────────── v0.1.1 Installed SplitApplyCombine ─────────── v1.2.3 Installed DataAPI ───────────────────── v1.16.0 Installed PooledArrays ──────────────── v1.4.3 Installed RecipesBase ───────────────── v1.3.4 Installed TZJData ───────────────────── v1.5.0+2025b Installed InlineStrings ─────────────── v1.4.5 Installed Setfield ──────────────────── v1.1.2 Installed ConcurrentUtilities ───────── v2.5.0 Installed BSplineKit ────────────────── v0.19.1 Installed StaticArraysCore ──────────── v1.4.4 Installed NaNMath ───────────────────── v1.1.3 Installed JLLWrappers ───────────────── v1.7.1 Installed ProgressMeter ─────────────── v1.11.0 Installed StaticArrays ──────────────── v1.9.16 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ConstructionBase ──────────── v1.6.0 Installed PrecompileTools ───────────── v1.2.1 Installed DataValueInterfaces ───────── v1.0.0 Installed LaTeXStrings ──────────────── v1.4.0 Installed StringViews ───────────────── v1.3.6 Installed EnumX ─────────────────────── v1.0.5 Installed OrderedCollections ────────── v1.8.1 Installed TranscodingStreams ────────── v0.11.3 Installed MixedModelsDatasets ───────── v0.1.2 Installed CEnum ─────────────────────── v0.5.0 Installed InvertedIndices ───────────── v1.3.1 Installed NLSolversBase ─────────────── v7.10.0 Installed Indexing ──────────────────── v1.1.1 Installed ArrayInterface ────────────── v7.22.0 Installed ForwardDiff ───────────────── v0.10.39 Installed BitIntegers ───────────────── v0.3.7 Installed MixedModels ───────────────── v4.36.0 Installed QuadGK ────────────────────── v2.11.2 Installed FillArrays ────────────────── v1.16.0 Installed Reexport ──────────────────── v1.2.2 Installed LineSearches ──────────────── v7.5.1 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed Statistics ────────────────── v1.11.1 Installed StatsModels ───────────────── v0.7.8 Installed GLM ───────────────────────── v1.9.2 Installed CodecZstd ─────────────────── v0.8.7 Installed DataFrames ────────────────── v1.8.1 Installed CommonSubexpressions ──────── v0.3.1 Installed LogExpFunctions ───────────── v0.3.29 Installed DataStructures ────────────── v0.19.3 Installed ShiftedArrays ─────────────── v2.0.0 Installed AliasTables ───────────────── v1.1.3 Installed Requires ──────────────────── v1.3.1 Installed StatsAPI ──────────────────── v1.8.0 Installed MetidaBase ────────────────── v0.14.1 Installed MacroTools ────────────────── v0.5.16 Installed Static ────────────────────── v1.3.1 Installed Distributions ─────────────── v0.25.123 Installed Compat ────────────────────── v4.18.1 Installed ExprTools ─────────────────── v0.1.10 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed CommonWorldInvalidations ──── v1.0.0 Installed CodecLz4 ──────────────────── v0.4.6 Installed MetidaNCA ─────────────────── v0.5.18 Installed Missings ──────────────────── v1.2.0 Installed StringManipulation ────────── v0.4.2 Installed SortingAlgorithms ─────────── v1.2.2 Installed StructTypes ───────────────── v1.11.0 Installed DocStringExtensions ───────── v0.9.5 Installed ArrayLayouts ──────────────── v1.12.2 Installed StatsBase ─────────────────── v0.34.10 Installed DifferentiationInterface ──── v0.7.14 Installed FiniteDiff ────────────────── v2.29.0 Updating `~/.julia/environments/v1.11/Project.toml` [00e1d80e] + MetidaBioeq v0.2.9 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [69666777] + Arrow v2.8.1 [31f734f8] + ArrowTypes v2.3.0 [093aae92] + BSplineKit v0.19.1 [aae01518] + BandedMatrices v1.11.0 [c3b6d118] + BitIntegers v0.3.7 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.7 ⌅ [324d7699] + CategoricalArrays v0.10.9 [5ba52731] + CodecLz4 v0.4.6 [6b39b394] + CodecZstd v0.8.7 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.8.1 [864edb3b] + DataStructures v0.19.3 [e2d170a0] + DataValueInterfaces v1.0.0 [85a47980] + Dictionaries v0.4.6 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [442a2c76] + FastGaussQuadrature v1.1.0 [1a297f60] + FillArrays v1.16.0 [6a86dc24] + FiniteDiff v2.29.0 ⌅ [f6369f11] + ForwardDiff v0.10.39 [38e38edf] + GLM v1.9.2 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [313cdc1a] + Indexing v1.1.1 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [0f8b85d8] + JSON3 v1.14.3 [b964fa9f] + LaTeXStrings v1.4.0 ⌃ [d3d80556] + LineSearches v7.5.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 ⌅ [a1dec852] + Metida v0.16.4 ⌅ [075456b7] + MetidaBase v0.14.1 [00e1d80e] + MetidaBioeq v0.2.9 ⌅ [097c2839] + MetidaNCA v0.5.18 [e1d29d7a] + Missings v1.2.0 ⌅ [ff71e718] + MixedModels v4.36.0 [7e9fb7ac] + MixedModelsDatasets v0.1.2 [78c3b35d] + Mocking v0.8.1 ⌅ [d41bc354] + NLSolversBase v7.10.0 [76087f3c] + NLopt v1.2.1 [77ba4419] + NaNMath v1.1.3 ⌅ [429524aa] + Optim v1.13.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 ⌅ [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.11.0 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.9.0 [431bcebd] + SciMLPublic v1.0.1 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [efcf1570] + Setfield v1.1.2 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [03a91e81] + SplitApplyCombine v1.2.3 [aedffcd0] + Static v1.3.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [3eaba693] + StatsModels v0.7.8 [892a3eda] + StringManipulation v0.4.2 [354b36f9] + StringViews v1.3.6 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [f269a46b] + TimeZones v1.22.2 [3bb67fe8] + TranscodingStreams v0.11.3 [9d95f2ec] + TypedTables v1.4.6 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 11.74s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling project... 3151.0 ms ✓ TestEnv 1 dependency successfully precompiled in 3 seconds. 23 already precompiled. Precompiling package dependencies... Precompiling project... 887.0 ms ✓ StringViews 578.6 ms ✓ LaTeXStrings 773.1 ms ✓ PositiveFactorizations 599.0 ms ✓ ExprTools 494.2 ms ✓ IteratorInterfaceExtensions 729.4 ms ✓ WorkerUtilities 729.7 ms ✓ StatsAPI 1078.9 ms ✓ ADTypes 602.4 ms ✓ CEnum 1576.3 ms ✓ FillArrays 896.1 ms ✓ Statistics 4156.2 ms ✓ MacroTools 756.0 ms ✓ TZJData 572.9 ms ✓ ShiftedArrays 925.0 ms ✓ OrderedCollections 841.4 ms ✓ Requires 489.3 ms ✓ DataValueInterfaces 587.0 ms ✓ EnumX 519.0 ms ✓ Reexport 923.9 ms ✓ DocStringExtensions 1136.2 ms ✓ InlineStrings 1685.1 ms ✓ IrrationalConstants 1053.1 ms ✓ BitIntegers 522.2 ms ✓ PtrArrays 886.5 ms ✓ TranscodingStreams 784.7 ms ✓ NaNMath 592.7 ms ✓ InvertedIndices 763.5 ms ✓ ArrowTypes 498.5 ms ✓ IfElse 739.8 ms ✓ ConstructionBase 599.4 ms ✓ CommonWorldInvalidations 568.7 ms ✓ DataAPI 1866.1 ms ✓ Crayons 551.5 ms ✓ Indexing 597.5 ms ✓ SciMLPublic 690.0 ms ✓ StaticArraysCore 964.1 ms ✓ SuiteSparse 1442.5 ms ✓ ConcurrentUtilities 1611.3 ms ✓ ProgressMeter 1734.6 ms ✓ SentinelArrays 1447.8 ms ✓ StructTypes 749.7 ms ✓ Scratch 1206.7 ms ✓ CpuId 1033.0 ms ✓ Preferences 966.1 ms ✓ Compat 585.2 ms ✓ TableTraits 1733.2 ms ✓ DifferentiationInterface 1180.0 ms ✓ FillArrays → FillArraysSparseArraysExt 1084.9 ms ✓ Statistics → SparseArraysExt 741.6 ms ✓ FillArrays → FillArraysStatisticsExt 1447.5 ms ✓ CommonSubexpressions 3112.6 ms ✓ DataStructures 759.1 ms ✓ Adapt 1169.6 ms ✓ LogExpFunctions 812.2 ms ✓ AliasTables 787.4 ms ✓ CodecZlib 707.9 ms ✓ InlineStrings → ArrowTypesExt 660.0 ms ✓ ConstructionBase → ConstructionBaseLinearAlgebraExt 683.0 ms ✓ ADTypes → ADTypesConstructionBaseExt 847.6 ms ✓ PooledArrays 772.3 ms ✓ Missings 1711.1 ms ✓ Dictionaries 703.0 ms ✓ DiffResults 1532.0 ms ✓ PDMats 878.3 ms ✓ JLLWrappers 774.7 ms ✓ PrecompileTools 713.8 ms ✓ Compat → CompatLinearAlgebraExt 1412.3 ms ✓ Tables 1087.5 ms ✓ DifferentiationInterface → DifferentiationInterfaceSparseArraysExt 877.0 ms ✓ SortingAlgorithms 1971.7 ms ✓ QuadGK 1038.2 ms ✓ Adapt → AdaptSparseArraysExt 907.6 ms ✓ ArrayInterface 3238.2 ms ✓ Setfield 6895.1 ms ✓ CategoricalArrays 1139.0 ms ✓ SplitApplyCombine 1153.1 ms ✓ FillArrays → FillArraysPDMatsExt 1566.3 ms ✓ Lz4_jll 1101.2 ms ✓ Rmath_jll 1126.1 ms ✓ NLopt_jll 1158.6 ms ✓ Zstd_jll 1143.2 ms ✓ OpenSpecFun_jll 13261.3 ms ✓ StaticArrays 2944.6 ms ✓ RecipesBase 3495.0 ms ✓ StringManipulation 19416.6 ms ✓ Parsers 1537.4 ms ✓ Static 862.1 ms ✓ Mocking 1561.5 ms ✓ FilePathsBase 4098.8 ms ✓ StatsBase 1013.0 ms ✓ ArrayInterface → ArrayInterfaceSparseArraysExt 633.9 ms ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt 866.5 ms ✓ CategoricalArrays → CategoricalArraysStructTypesExt 899.1 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1423.8 ms ✓ TypedTables 2126.0 ms ✓ CodecLz4 1539.9 ms ✓ Rmath 2022.8 ms ✓ NLopt 2314.8 ms ✓ CodecZstd 5031.8 ms ✓ SpecialFunctions 1231.7 ms ✓ StaticArrays → StaticArraysStatisticsExt 1297.8 ms ✓ FillArrays → FillArraysStaticArraysExt 1238.4 ms ✓ ConstructionBase → ConstructionBaseStaticArraysExt 1233.3 ms ✓ DifferentiationInterface → DifferentiationInterfaceStaticArraysExt 1240.0 ms ✓ Adapt → AdaptStaticArraysExt 2028.9 ms ✓ CategoricalArrays → CategoricalArraysRecipesBaseExt 32510.6 ms ✓ PrettyTables 15825.7 ms ✓ JSON3 1032.8 ms ✓ InlineStrings → ParsersExt 1911.4 ms ✓ CPUSummary 8635.5 ms ✓ TimeZones 808.0 ms ✓ FilePathsBase → FilePathsBaseMmapExt 2091.7 ms ✓ FilePathsBase → FilePathsBaseTestExt 1222.2 ms ✓ PDMats → StatsBaseExt 1102.7 ms ✓ FiniteDiff 4166.3 ms ✓ FastGaussQuadrature 2142.6 ms ✓ HypergeometricFunctions 1263.8 ms ✓ DiffRules 22392.0 ms ✓ ArrayLayouts 80567.6 ms ✓ DataFrames 1170.1 ms ✓ JSON3 → JSON3ArrowExt 1669.4 ms ✓ WeakRefStrings 1754.7 ms ✓ TimeZones → TimeZonesRecipesBaseExt 11692.8 ms ✓ Arrow 1037.7 ms ✓ FiniteDiff → FiniteDiffSparseArraysExt 1173.0 ms ✓ FiniteDiff → FiniteDiffStaticArraysExt 854.8 ms ✓ DifferentiationInterface → DifferentiationInterfaceFiniteDiffExt 3100.2 ms ✓ StatsFuns 6904.4 ms ✓ ForwardDiff 2655.4 ms ✓ ArrayLayouts → ArrayLayoutsSparseArraysExt 28365.0 ms ✓ BandedMatrices 27599.6 ms ✓ CSV 4147.3 ms ✓ MixedModelsDatasets 2562.9 ms ✓ CategoricalArrays → CategoricalArraysArrowExt 6404.6 ms ✓ StatsModels 8705.9 ms ✓ Distributions 1789.6 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 1386.7 ms ✓ DifferentiationInterface → DifferentiationInterfaceForwardDiffExt 3585.3 ms ✓ BandedMatrices → BandedMatricesSparseArraysExt 3223.3 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 3115.0 ms ✓ FiniteDiff → FiniteDiffBandedMatricesExt 8224.6 ms ✓ MetidaBase 2566.3 ms ✓ Distributions → DistributionsTestExt 6687.5 ms ✓ GLM 1905.3 ms ✓ NLSolversBase 24630.4 ms ✓ BSplineKit 15365.6 ms ✓ MetidaNCA 2245.7 ms ✓ LineSearches 129784.4 ms ✓ MixedModels 5662.7 ms ✓ Optim 8492.7 ms ✓ Metida 30450.6 ms ✓ MetidaBioeq 152 dependencies successfully precompiled in 701 seconds. 37 already precompiled. 1 dependency had output during precompilation: ┌ MixedModels │ Downloading artifact: TestData └ Precompilation completed after 724.84s ################################################################################ # Testing # Testing MetidaBioeq Status `/tmp/jl_uQWqWz/Project.toml` [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [a93c6f00] DataFrames v1.8.1 [31c24e10] Distributions v0.25.123 [38e38edf] GLM v1.9.2 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 ⌅ [ff71e718] MixedModels v4.36.0 [2913bbd2] StatsBase v0.34.10 [3eaba693] StatsModels v0.7.8 [8dfed614] Test v1.11.0 Status `/tmp/jl_uQWqWz/Manifest.toml` [47edcb42] ADTypes v1.21.0 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [69666777] Arrow v2.8.1 [31f734f8] ArrowTypes v2.3.0 [093aae92] BSplineKit v0.19.1 [aae01518] BandedMatrices v1.11.0 [c3b6d118] BitIntegers v0.3.7 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.7 [336ed68f] CSV v0.10.15 ⌅ [324d7699] CategoricalArrays v0.10.9 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.7 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.8.1 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [85a47980] Dictionaries v0.4.6 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [442a2c76] FastGaussQuadrature v1.1.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [6a86dc24] FiniteDiff v2.29.0 ⌅ [f6369f11] ForwardDiff v0.10.39 [38e38edf] GLM v1.9.2 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [313cdc1a] Indexing v1.1.1 [842dd82b] InlineStrings v1.4.5 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [0f8b85d8] JSON3 v1.14.3 [b964fa9f] LaTeXStrings v1.4.0 ⌃ [d3d80556] LineSearches v7.5.1 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 ⌅ [a1dec852] Metida v0.16.4 ⌅ [075456b7] MetidaBase v0.14.1 [00e1d80e] MetidaBioeq v0.2.9 ⌅ [097c2839] MetidaNCA v0.5.18 [e1d29d7a] Missings v1.2.0 ⌅ [ff71e718] MixedModels v4.36.0 [7e9fb7ac] MixedModelsDatasets v0.1.2 [78c3b35d] Mocking v0.8.1 ⌅ [d41bc354] NLSolversBase v7.10.0 [76087f3c] NLopt v1.2.1 [77ba4419] NaNMath v1.1.3 ⌅ [429524aa] Optim v1.13.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 ⌅ [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.11.0 [43287f4e] 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Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X4 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: `confint(obj::LinearModel, level::Real)` is deprecated, use `confint(obj, level = level)` instead. │ caller = #confint#87 at statsmodel.jl:28 [inlined] └ @ Core ~/.julia/packages/StatsModels/1QB5l/src/statsmodel.jl:28 ┌ Warning: Method B used, estimator changed to MixedModels.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:500 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:503 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C used, estimator changed to Metida.jl! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:506 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method P or unknown, method changed to "B"! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:495 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 [ Info: Reference formulation not specified. First used: "R". [ Info: Parallel desigh used. ┌ Warning: Method not P (parallel), for parallel simple GLM model will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:426 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 ┌ Warning: Design is parallel, but estimator not GLM, GLM will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:425 [ Info: Reference formulation not specified. First used: "R". [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Design type seems fine... ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method C can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:444 ┌ Warning: Method B will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:450 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: Method for parallel design can't be used with 2X2 design! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:445 ┌ Warning: Method A will be used! └ @ MetidaBioeq ~/.julia/packages/MetidaBioeq/iXqnI/src/bioequivalence.jl:447 [ Info: No dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 ┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol. └ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110 Basic test: Test Failed at /source/usr/share/julia/stdlib/v1.11/Test/src/Test.jl:930 Expression: isempty(stderr_content) Evaluated: isempty("┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n┌ Warning: x_tol is deprecated. Use x_abstol or x_reltol instead. The provided value (1.0e-10) will be used as x_abstol.\n└ @ Optim ~/.julia/packages/Optim/gmigl/src/types.jl:110\n") Stacktrace: [1] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:680 [inlined] [2] macro expansion @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:176 [inlined] [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [4] top-level scope @ ~/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:30 [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 [ Info: autoseq is `true`, but sequence defined - sequence column used [ Info: Dropuot(s) found in dataframe! [ Info: Dropuot(s) removed! [ Info: Sequences looks correct... [ Info: Trying to find out the design... [ Info: Seems design type is: 2X2X2 Test Summary: | Pass Fail Total Time Basic test | 61 1 62 7m12.5s ERROR: LoadError: Some tests did not pass: 61 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/tests.jl:28 in expression starting at /home/pkgeval/.julia/packages/MetidaBioeq/iXqnI/test/runtests.jl:3 Testing failed after 533.51s ERROR: LoadError: Package MetidaBioeq errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 1297.2s: package has test failures