Package evaluation to test HiddenMarkovModels on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T04:25:10.656 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.75s ################################################################################ # Installation # Installing HiddenMarkovModels... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [84ca31d5] + HiddenMarkovModels v0.7.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [dce04be8] + ArgCheck v2.5.0 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [b429d917] + DensityInterface v0.4.0 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [84ca31d5] + HiddenMarkovModels v0.7.0 [34004b35] + HypergeometricFunctions v0.3.28 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [21216c6a] + Preferences v1.5.1 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [276daf66] + SpecialFunctions v2.6.1 [82ae8749] + StatsAPI v1.8.0 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Installation completed after 5.44s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 16035.6 ms ✓ HiddenMarkovModels 3440.1 ms ✓ Distributions → DistributionsDensityInterfaceExt 3078.5 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 3 dependencies successfully precompiled in 31 seconds. 185 already precompiled. Precompilation completed after 44.61s ################################################################################ # Testing # Testing HiddenMarkovModels Status `/tmp/jl_Obm3va/Project.toml` [4c88cf16] Aqua v0.8.14 [b0b7db55] ComponentArrays v0.15.31 [b429d917] DensityInterface v0.4.0 [31c24e10] Distributions v0.25.123 [e30172f5] Documenter v1.16.1 [7da242da] Enzyme v0.13.118 [f6369f11] ForwardDiff v1.3.1 [84ca31d5] HiddenMarkovModels v0.7.0 ⌅ [c3a54625] JET v0.9.20 [98e50ef6] JuliaFormatter v2.2.0 [aa2f6b4e] LogarithmicNumbers v1.4.1 [eff96d63] Measurements v2.14.1 [860ef19b] StableRNGs v1.0.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [e88e6eb3] Zygote v0.7.10 [37e2e46d] LinearAlgebra v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Obm3va/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.22.0 [fa961155] CEnum v0.5.0 [49dc2e85] Calculus v0.5.2 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 ⌅ [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 ⌅ [a80b9123] CommonMark v0.9.1 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b0b7db55] ComponentArrays v0.15.31 [187b0558] ConstructionBase v1.6.0 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [e2d170a0] DataValueInterfaces v1.0.0 [b429d917] DensityInterface v0.4.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [e30172f5] Documenter v1.16.1 [7da242da] Enzyme v0.13.118 [f151be2c] EnzymeCore v0.8.18 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.16.0 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [46192b85] GPUArraysCore v0.2.0 [61eb1bfa] GPUCompiler v1.8.0 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [84ca31d5] HiddenMarkovModels v0.7.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v1.0.0 [7869d1d1] IRTools v0.4.15 [615f187c] IfElse v0.1.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [c3a54625] JET v0.9.20 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [aa1ae85d] JuliaInterpreter v0.9.46 ⌅ [70703baa] JuliaSyntax v0.4.10 [929cbde3] LLVM v9.4.4 [0e77f7df] LazilyInitializedFields v1.3.0 [2ab3a3ac] LogExpFunctions v0.3.29 [aa2f6b4e] LogarithmicNumbers v1.4.1 ⌃ [6f1432cf] LoweredCodeUtils v3.2.2 [1914dd2f] MacroTools v0.5.16 [d0879d2d] MarkdownAST v0.1.2 [eff96d63] Measurements v2.14.1 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [d8793406] ObjectFile v0.5.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.9.0 [431bcebd] SciMLPublic v1.0.1 [6c6a2e73] Scratch v1.3.0 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [860ef19b] StableRNGs v1.0.4 [aedffcd0] Static v1.3.1 [0d7ed370] StaticArrayInterface v1.8.0 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [09ab397b] StructArrays v0.7.2 [53d494c1] StructIO v0.3.1 [ec057cc2] StructUtils v2.6.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [e689c965] Tracy v0.1.6 [3bb67fe8] TranscodingStreams v0.11.3 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [7cc45869] Enzyme_jll v0.0.238+0 [2e619515] Expat_jll v2.7.3+0 [020c3dae] Git_LFS_jll v3.7.0+0 [f8c6e375] Git_jll v2.52.0+0 [dad2f222] LLVMExtra_jll v0.0.38+0 [ad6e5548] LibTracyClient_jll v0.13.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling HiddenMarkovModels... 12767.5 ms ✓ HiddenMarkovModels 1 dependency successfully precompiled in 14 seconds. 44 already precompiled. Resolving package versions... Updating `/tmp/jl_Obm3va/Project.toml` [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` Updating `/tmp/jl_Obm3va/Manifest.toml` [6e4b80f9] + BenchmarkTools v1.6.3 [619c5ee3] + HMMTest v0.1.0 `~/.julia/packages/HiddenMarkovModels/Kmgf4/libs/HMMTest` [9abbd945] + Profile v1.11.0 Precompiling HiddenMarkovModelsDistributionsExt... 3025.5 ms ✓ HiddenMarkovModels → HiddenMarkovModelsDistributionsExt 3326.8 ms ✓ Distributions → DistributionsDensityInterfaceExt 3231.0 ms ✓ Distributions → DistributionsChainRulesCoreExt 3 dependencies successfully precompiled in 10 seconds. 63 already precompiled. Precompiling Zygote... 2567.9 ms ✓ ZygoteRules 11698.8 ms ✓ ChainRules 7233.3 ms ✓ ForwardDiff 61421.5 ms ✓ Zygote 4 dependencies successfully precompiled in 84 seconds. 61 already precompiled. Precompiling ComponentArrays... 1380.7 ms ✓ ComponentArrays 1 dependency successfully precompiled in 2 seconds. 24 already precompiled. Precompiling ArrayInterfaceChainRulesExt... 1195.6 ms ✓ ArrayInterface → ArrayInterfaceChainRulesExt 1 dependency successfully precompiled in 1 seconds. 40 already precompiled. Precompiling ComponentArraysZygoteExt... 2639.8 ms ✓ ComponentArrays → ComponentArraysZygoteExt 1 dependency successfully precompiled in 3 seconds. 78 already precompiled. Precompiling QuadGKEnzymeExt... 49431.8 ms ✓ QuadGK → QuadGKEnzymeExt 1 dependency successfully precompiled in 50 seconds. 48 already precompiled. Precompiling EnzymeLogExpFunctionsExt... 48096.2 ms ✓ Enzyme → EnzymeLogExpFunctionsExt 1 dependency successfully precompiled in 48 seconds. 48 already precompiled. Precompiling EnzymeChainRulesCoreExt... 47264.8 ms ✓ Enzyme → EnzymeChainRulesCoreExt 1 dependency successfully precompiled in 48 seconds. 50 already precompiled. Precompiling EnzymeSpecialFunctionsExt... 51703.1 ms ✓ Enzyme → EnzymeSpecialFunctionsExt 1 dependency successfully precompiled in 52 seconds. 53 already precompiled. Precompiling EnzymeGPUArraysCoreExt... 51029.9 ms ✓ Enzyme → EnzymeGPUArraysCoreExt 1 dependency successfully precompiled in 52 seconds. 50 already precompiled. Precompiling HMMTest... 8856.5 ms ✓ HMMTest 1 dependency successfully precompiled in 9 seconds. 75 already precompiled. Precompiling LogarithmicNumbersForwardDiffExt... 1784.5 ms ✓ LogarithmicNumbers → LogarithmicNumbersForwardDiffExt 1 dependency successfully precompiled in 2 seconds. 21 already precompiled. Precompiling MeasurementsSpecialFunctionsExt... 1177.3 ms ✓ Measurements → MeasurementsSpecialFunctionsExt 1 dependency successfully precompiled in 1 seconds. 15 already precompiled. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/xvqbW/src/utilities/utilities.jl:680 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Broken Total Time HiddenMarkovModels.jl | 669 6 675 30m15.7s Code formatting | 1 1 1m28.4s Code quality | 9 9 58.5s Code linting | 1 1 3m31.4s Distributions | 99 1 100 12.3s Example - autodiff.jl | 26 3 29 13m48.6s Example - basics.jl | 48 48 1m12.9s Example - controlled.jl | 46 46 38.7s Example - interfaces.jl | 37 37 1m04.5s Example - temporal.jl | 50 50 1m06.4s Example - types.jl | 52 1 53 1m13.7s Doctests | 1 1 55.3s Correctness - Standard | 298 1 299 4m04.7s Normal | 48 48 43.6s Coherence | 30 30 8.5s Type stability | 14 14 0.9s Allocations | 4 4 22.6s DiagNormal | 44 44 21.3s Coherence | 30 30 7.9s Type stability | 14 14 1.1s LightCategorical | 48 48 47.6s Coherence | 30 30 10.2s Type stability | 14 14 0.9s Allocations | 4 4 23.5s LightDiagNormal | 48 48 46.8s Coherence | 30 30 8.2s Type stability | 14 14 1.2s Allocations | 4 4 23.6s Normal (sparse) | 38 1 39 10.3s Coherence | 24 24 3.4s Type stability | 14 14 0.0s Normal transposed | 48 48 53.5s Coherence | 30 30 14.2s Type stability | 14 14 1.5s Allocations | 4 4 24.2s Normal and Exponential | 24 24 20.2s Coherence | 24 24 13.5s Miscellaneous | 1 1 0.1s Allow NaN density | 1 1 0.1s Testing HiddenMarkovModels tests passed Testing completed after 1864.87s PkgEval succeeded after 1952.67s