Package evaluation to test GNNlib on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T10:38:13.317 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.64s ################################################################################ # Installation # Installing GNNlib... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [a6a84749] + GNNlib v1.2.0 Updating `~/.julia/environments/v1.11/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [a9b6321e] + Atomix v1.1.2 [198e06fe] + BangBang v0.4.6 [9718e550] + Baselet v0.1.1 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.6.0 [6add18c4] + ContextVariablesX v0.1.3 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [244e2a9f] + DefineSingletons v0.1.2 [8bb1440f] + DelimitedFiles v1.9.1 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [cc61a311] + FLoops v0.2.2 [b9860ae5] + FLoopsBase v0.1.1 [d9f16b24] + Functors v0.5.2 [aed8fd31] + GNNGraphs v1.5.0 [a6a84749] + GNNlib v1.2.0 [46192b85] + GPUArraysCore v0.2.0 ⌃ [86223c79] + Graphs v1.13.1 [076d061b] + HashArrayMappedTries v0.2.0 [d25df0c9] + Inflate v0.1.5 [22cec73e] + InitialValues v0.3.1 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [b14d175d] + JuliaVariables v0.2.4 [63c18a36] + KernelAbstractions v0.9.39 ⌅ [0b1a1467] + KrylovKit v0.9.5 [2ab3a3ac] + LogExpFunctions v0.3.29 [c2834f40] + MLCore v1.0.0 [7e8f7934] + MLDataDevices v1.17.1 [d8e11817] + MLStyle v0.4.17 [f1d291b0] + MLUtils v0.4.8 [1914dd2f] + MacroTools v0.5.16 [128add7d] + MicroCollections v0.2.0 [e1d29d7a] + Missings v1.2.0 [872c559c] + NNlib v0.9.33 [71a1bf82] + NameResolution v0.1.5 [b8a86587] + NearestNeighbors v0.4.26 [bac558e1] + OrderedCollections v1.8.1 [65ce6f38] + PackageExtensionCompat v1.0.2 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [8162dcfd] + PrettyPrint v0.2.0 [43287f4e] + PtrArrays v1.3.0 [ae029012] + Requires v1.3.1 [431bcebd] + SciMLPublic v1.0.1 [7e506255] + ScopedValues v1.5.0 [efcf1570] + Setfield v1.1.2 [605ecd9f] + ShowCases v0.1.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [171d559e] + SplittablesBase v0.1.15 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [28d57a85] + Transducers v0.4.85 [013be700] + UnsafeAtomics v0.3.0 [409d34a3] + VectorInterface v0.5.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 5.28s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 1466.7 ms ✓ KrylovKit → KrylovKitChainRulesCoreExt ✗ GNNlib 1 dependency successfully precompiled in 14 seconds. 187 already precompiled. ERROR: LoadError: The following 2 direct dependencies failed to precompile: GNNGraphs Error: Missing source file for Base.PkgId(UUID("aed8fd31-079b-4b5a-b342-a13352159b8c"), "GNNGraphs") GNNlib Failed to precompile GNNlib [a6a84749-d869-43f8-aacc-be26a1996e48] to "/home/pkgeval/.julia/compiled/v1.11/GNNlib/jl_boGz0w". ERROR: LoadError: ArgumentError: Package GNNGraphs [aed8fd31-079b-4b5a-b342-a13352159b8c] is required but does not seem to be installed: - Run `Pkg.instantiate()` to install all recorded dependencies. Stacktrace: [1] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2515 [2] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [3] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [4] invoke_in_world @ ./essentials.jl:1086 [inlined] [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [6] macro expansion @ ./loading.jl:2314 [inlined] [7] macro expansion @ ./lock.jl:273 [inlined] [8] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [9] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [10] invoke_in_world @ ./essentials.jl:1086 [inlined] [11] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [12] include @ ./Base.jl:562 [inlined] [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [14] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GNNlib/pSLHK/src/GNNlib.jl:1 in expression starting at stdin:6 in expression starting at /PkgEval.jl/scripts/precompile.jl:34 Precompilation failed after 32.81s ################################################################################ # Testing # Testing GNNlib Status `/tmp/jl_Z5Nctm/Project.toml` [26cc04aa] FiniteDifferences v0.12.33 [587475ba] Flux v0.16.7 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.5.0 `~/.julia/packages/GNNlib/GNNGraphs` [a6a84749] GNNlib v1.2.0 `~/.julia/packages/GNNlib/pSLHK` ⌃ [86223c79] Graphs v1.13.1 [7e8f7934] MLDataDevices v1.17.1 [f1d291b0] MLUtils v0.4.8 [872c559c] NNlib v0.9.33 [189a3867] Reexport v1.2.2 [10745b16] Statistics v1.11.1 [f8b46487] TestItemRunner v1.1.4 [e88e6eb3] Zygote v0.7.10 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Z5Nctm/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [a9b6321e] Atomix v1.1.2 [198e06fe] BangBang v0.4.6 [9718e550] Baselet v0.1.1 [082447d4] ChainRules v1.72.6 [d360d2e6] ChainRulesCore v1.26.0 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.18.1 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.6.0 [6add18c4] ContextVariablesX v0.1.3 [9a962f9c] DataAPI v1.16.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [244e2a9f] DefineSingletons v0.1.2 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [ffbed154] DocStringExtensions v0.9.5 [f151be2c] EnzymeCore v0.8.18 [cc61a311] FLoops v0.2.2 [b9860ae5] FLoopsBase v0.1.1 [1a297f60] FillArrays v1.16.0 [26cc04aa] FiniteDifferences v0.12.33 [587475ba] Flux v0.16.7 [f6369f11] ForwardDiff v1.3.1 [d9f16b24] Functors v0.5.2 [aed8fd31] GNNGraphs v1.5.0 `~/.julia/packages/GNNlib/GNNGraphs` [a6a84749] GNNlib v1.2.0 `~/.julia/packages/GNNlib/pSLHK` [46192b85] GPUArraysCore v0.2.0 ⌃ [86223c79] Graphs v1.13.1 [076d061b] HashArrayMappedTries v0.2.0 [7869d1d1] IRTools v0.4.15 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.1 [b14d175d] JuliaVariables v0.2.4 [63c18a36] KernelAbstractions v0.9.39 ⌅ [0b1a1467] KrylovKit v0.9.5 [2ab3a3ac] LogExpFunctions v0.3.29 [c2834f40] MLCore v1.0.0 [7e8f7934] MLDataDevices v1.17.1 [d8e11817] MLStyle v0.4.17 [f1d291b0] MLUtils v0.4.8 [1914dd2f] MacroTools v0.5.16 [128add7d] MicroCollections v0.2.0 [e1d29d7a] Missings v1.2.0 [872c559c] NNlib v0.9.33 [77ba4419] NaNMath v1.1.3 [71a1bf82] NameResolution v0.1.5 [b8a86587] NearestNeighbors v0.4.26 [0b1bfda6] OneHotArrays v0.2.10 [3bd65402] Optimisers v0.4.7 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [8162dcfd] PrettyPrint v0.2.0 [33c8b6b6] ProgressLogging v0.1.6 [43287f4e] PtrArrays v1.3.0 [c1ae055f] RealDot v0.1.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [431bcebd] SciMLPublic v1.0.1 [7e506255] ScopedValues v1.5.0 [efcf1570] Setfield v1.1.2 [605ecd9f] ShowCases v0.1.0 [699a6c99] SimpleTraits v0.9.5 [a2af1166] SortingAlgorithms v1.2.2 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.6.1 [171d559e] SplittablesBase v0.1.15 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [09ab397b] StructArrays v0.7.2 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.1 [f8b46487] TestItemRunner v1.1.4 [1c621080] TestItems v1.0.0 [28d57a85] Transducers v0.4.85 [013be700] UnsafeAtomics v0.3.0 [409d34a3] VectorInterface v0.5.0 [e88e6eb3] Zygote v0.7.10 [700de1a5] ZygoteRules v0.2.7 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling GNNlib... Info Given GNNlib was explicitly requested, output will be shown live  ERROR: LoadError: ArgumentError: Package GNNGraphs [aed8fd31-079b-4b5a-b342-a13352159b8c] is required but does not seem to be installed:  - Run `Pkg.instantiate()` to install all recorded dependencies.  Stacktrace:  [1] _require(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2515  [2] __require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2388  [3] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [4] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2375  [6] macro expansion  @ ./loading.jl:2314 [inlined]  [7] macro expansion  @ ./lock.jl:273 [inlined]  [8] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2271  [9] #invoke_in_world#3  @ ./essentials.jl:1089 [inlined]  [10] invoke_in_world  @ ./essentials.jl:1086 [inlined]  [11] require(into::Module, mod::Symbol)  @ Base ./loading.jl:2260  [12] include  @ ./Base.jl:562 [inlined]  [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:2924  [14] top-level scope  @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GNNlib/pSLHK/src/GNNlib.jl:1 in expression starting at stdin:6 ✗ GNNlib 0 dependencies successfully precompiled in 10 seconds. 116 already precompiled. Test Summary: | Total Time Package | 0 13.3s ERROR: LoadError: The following 2 direct dependencies failed to precompile: GNNGraphs Error: Missing source file for Base.PkgId(Base.UUID("aed8fd31-079b-4b5a-b342-a13352159b8c"), "GNNGraphs") GNNlib Failed to precompile GNNlib [a6a84749-d869-43f8-aacc-be26a1996e48] to "/home/pkgeval/.julia/compiled/v1.11/GNNlib/jl_ZBM1uS". ERROR: LoadError: ArgumentError: Package GNNGraphs [aed8fd31-079b-4b5a-b342-a13352159b8c] is required but does not seem to be installed: - Run `Pkg.instantiate()` to install all recorded dependencies. Stacktrace: [1] _require(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2515 [2] __require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2388 [3] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [4] invoke_in_world @ ./essentials.jl:1086 [inlined] [5] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2375 [6] macro expansion @ ./loading.jl:2314 [inlined] [7] macro expansion @ ./lock.jl:273 [inlined] [8] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2271 [9] #invoke_in_world#3 @ ./essentials.jl:1089 [inlined] [10] invoke_in_world @ ./essentials.jl:1086 [inlined] [11] require(into::Module, mod::Symbol) @ Base ./loading.jl:2260 [12] include @ ./Base.jl:562 [inlined] [13] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:2924 [14] top-level scope @ stdin:6 in expression starting at /home/pkgeval/.julia/packages/GNNlib/pSLHK/src/GNNlib.jl:1 in expression starting at stdin:6 in expression starting at /home/pkgeval/.julia/packages/GNNlib/pSLHK/test/test_module.jl:34 in expression starting at /home/pkgeval/.julia/packages/GNNlib/pSLHK/test/runtests.jl:17 Testing failed after 81.73s ERROR: LoadError: Package GNNlib errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 143.69s: package fails to precompile