Package evaluation to test FlxQTL on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T06:50:11.394 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.81s ################################################################################ # Installation # Installing FlxQTL... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [ede81e08] + FlxQTL v3.0.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.19.3 [8bb1440f] + DelimitedFiles v1.9.1 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [1a297f60] + FillArrays v1.16.0 [ede81e08] + FlxQTL v3.0.3 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.6 [692b3bcd] + JLLWrappers v1.7.1 [2ab3a3ac] + LogExpFunctions v0.3.29 [30fc2ffe] + LossFunctions v1.2.0 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.9.0 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.08s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 6364.9 ms ✓ FlxQTL 1 dependency successfully precompiled in 8 seconds. 56 already precompiled. Precompilation completed after 24.37s ################################################################################ # Testing # Testing FlxQTL Status `/tmp/jl_DvxCc5/Project.toml` [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ede81e08] FlxQTL v3.0.3 [30fc2ffe] LossFunctions v1.2.0 [90137ffa] StaticArrays v1.9.16 [10745b16] Statistics v1.11.1 [2913bbd2] StatsBase v0.34.10 [8ba89e20] Distributed v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_DvxCc5/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.19.3 [8bb1440f] DelimitedFiles v1.9.1 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [1a297f60] FillArrays v1.16.0 [ede81e08] FlxQTL v3.0.3 [34004b35] HypergeometricFunctions v0.3.28 [92d709cd] IrrationalConstants v0.2.6 [692b3bcd] JLLWrappers v1.7.1 [2ab3a3ac] LogExpFunctions v0.3.29 [30fc2ffe] LossFunctions v1.2.0 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.37 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [189a3867] Reexport v1.2.2 [79098fc4] Rmath v0.9.0 [a2af1166] SortingAlgorithms v1.2.2 [276daf66] SpecialFunctions v2.6.1 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.8.0 [2913bbd2] StatsBase v0.34.10 [4c63d2b9] StatsFuns v1.5.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [8dfed614] Test v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [bea87d4a] SuiteSparse_jll v7.7.0+0 [8e850b90] libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Positive definiteness dropping chromosome 1 is true. Positive definiteness dropping chromosome 2 is true. Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l]) Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l]) Test Passed Test Passed Kinship dropping chromosome 1 is corrected to be positive definite:isposdef(K_loco[:,:,l]) Kinship dropping chromosome 2 is corrected to be positive definite:isposdef(K_loco[:,:,l]) Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedKinship dropping chromosome 1 is corrected to be positive definite Kinship dropping chromosome 2 is corrected to be positive definite Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed 15.262437 seconds (45.80 M allocations: 6.941 GiB, 5.10% gc time) 0.030436 seconds (79.79 k allocations: 11.538 MiB, 19.59% gc time) 15.173370 seconds (45.80 M allocations: 6.942 GiB, 4.94% gc time) 15.104901 seconds (45.80 M allocations: 6.942 GiB, 4.77% gc time) Test PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest PassedTest Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed 7.686003 seconds (22.49 M allocations: 3.409 GiB, 6.03% gc time) 38.425049 seconds (122.17 M allocations: 16.795 GiB, 5.58% gc time) 7.928925 seconds (22.49 M allocations: 3.410 GiB, 5.91% gc time) 7.643419 seconds (22.49 M allocations: 3.410 GiB, 5.82% gc time) Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Passed Test Summary: | Pass Total Time FlxQTL.jl | 244 244 25m50.1s Testing FlxQTL tests passed Testing completed after 1353.8s PkgEval succeeded after 1611.56s