Package evaluation to test Climatology on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T13:47:00.017 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.5s ################################################################################ # Installation # Installing Climatology... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [9e9a4d37] + Climatology v0.5.18 Updating `~/.julia/environments/v1.11/Manifest.toml` [1520ce14] + AbstractTrees v0.4.5 [66dad0bd] + AliasTables v1.1.3 [d1d4a3ce] + BitFlags v0.1.9 ⌅ [179af706] + CFTime v0.1.4 [336ed68f] + CSV v0.10.15 [81a5f4ea] + CatViews v1.0.0 [0b6fb165] + ChunkCodecCore v1.0.1 [4c0bbee4] + ChunkCodecLibZlib v1.0.0 [55437552] + ChunkCodecLibZstd v1.0.0 [9e9a4d37] + Climatology v0.5.18 [944b1d66] + CodecZlib v0.7.8 [34da2185] + Compat v4.18.1 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [124859b0] + DataDeps v0.7.13 [a93c6f00] + DataFrames v1.8.1 ⌅ [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [9c0b9be8] + Dataverse v0.2.7 [b4f34e82] + Distances v0.10.12 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [411431e0] + Extents v0.1.6 [5789e2e9] + FileIO v1.17.1 [48062228] + FilePathsBase v0.9.24 [68eda718] + GeoFormatTypes v0.4.5 [cf35fbd7] + GeoInterface v1.6.0 [61d90e0f] + GeoJSON v0.8.4 [c27321d9] + Glob v1.4.0 [cd3eb016] + HTTP v1.10.19 [076d061b] + HashArrayMappedTries v0.2.0 [842dd82b] + InlineStrings v1.4.5 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.6.3 [692b3bcd] + JLLWrappers v1.7.1 ⌅ [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [8e2b3108] + KahanSummation v0.3.1 [8ac3fa9e] + LRUCache v1.6.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [1914dd2f] + MacroTools v0.5.16 [739be429] + MbedTLS v1.1.9 [cb8c808f] + MeshArrays v0.5.3 [e1d29d7a] + Missings v1.2.0 [b8a86587] + NearestNeighbors v0.4.26 [4d8831e6] + OpenSSL v1.6.1 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [08abe8d2] + PrettyTables v3.1.2 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [b0e4dd01] + RollingFunctions v0.8.1 [08e62803] + STAC v0.1.3 [7e506255] + ScopedValues v1.5.0 [6c6a2e73] + Scratch v1.3.0 [91c51154] + SentinelArrays v1.4.9 [777ac1f9] + SimpleBufferStream v1.2.0 [a2af1166] + SortingAlgorithms v1.2.2 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [892a3eda] + StringManipulation v0.4.2 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.1 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.27.0 [ea10d353] + WeakRefStrings v1.4.2 [76eceee3] + WorkerUtilities v1.6.1 [a5390f91] + ZipFile v0.10.1 [458c3c95] + OpenSSL_jll v3.5.4+0 [3161d3a3] + Zstd_jll v1.5.7+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 7870.3 ms ✓ RollingFunctions 8801.3 ms ✓ Dataverse 9521.4 ms ✓ MeshArrays → MeshArraysDataDepsExt 9444.8 ms ✓ MeshArrays → MeshArraysJLD2Ext 16851.2 ms ✓ MeshArrays → MeshArraysGeoJSONExt 68449.4 ms ✓ GeoInterface → GeoInterfaceMakieExt 538490.6 ms ✓ GeoJSON → GeoJSONMakieExt 83460.5 ms ? MeshArrays → MeshArraysMakieExt 72836.9 ms ✓ ClimateModels 63305.1 ms ✓ Climatology 43274.7 ms ✓ ClimateModels → ClimateModelsNetCDFExt 530358.4 ms ✓ ClimateModels → ClimateModelsMakieExt 52410.9 ms ✓ MITgcm 158638.0 ms ✓ Climatology → ClimatologyMakieExt 41037.2 ms ✓ Climatology → ClimatologyNCDatasetsExt 144292.5 ms ✓ MITgcm → MITgcmNetCDFExt 24040.2 ms ✓ Climatology → ClimatologyMITgcmExt 16 dependencies successfully precompiled in 1887 seconds. 350 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ MeshArrays → MeshArraysMakieExt │ WARNING: Method definition adapt_storage(Type{Array{T, N} where N}, SparseArrays.SparseMatrixCSC{Tv, Ti} where Ti<:Integer where Tv) where {T} in module AdaptSparseArraysExt at /home/pkgeval/.julia/packages/Adapt/2UZ81/ext/AdaptSparseArraysExt.jl:9 overwritten in module AdaptSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 1832.58s ################################################################################ # Testing # Testing Climatology Status `/tmp/jl_YctyAE/Project.toml` [13f3f980] CairoMakie v0.15.8 [9e9a4d37] Climatology v0.5.18 [dce5fa8e] MITgcm v0.5.14 [cb8c808f] MeshArrays v0.5.3 [85f8d34a] NCDatasets v0.14.10 [30363a11] NetCDF v0.12.2 [10745b16] Statistics v1.11.1 [fd094767] Suppressor v0.2.8 [8dfed614] Test v1.11.0 Status `/tmp/jl_YctyAE/Manifest.toml` [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.4.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.8 [18cc8868] BaseDirs v1.3.2 [d1d4a3ce] BitFlags v0.1.9 [fa961155] CEnum v0.5.0 ⌅ [179af706] CFTime v0.1.4 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.15.8 [81a5f4ea] CatViews v1.0.0 [d360d2e6] ChainRulesCore v1.26.0 [0b6fb165] ChunkCodecCore v1.0.1 [4c0bbee4] ChunkCodecLibZlib v1.0.0 [55437552] ChunkCodecLibZstd v1.0.0 [f6adb021] ClimateModels v0.3.15 [9e9a4d37] Climatology v0.5.18 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.2 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 ⌃ [1fbeeb36] CommonDataModel v0.4.1 [34da2185] Compat v4.18.1 [95dc2771] ComputePipeline v0.1.6 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [124859b0] DataDeps v0.7.13 [a93c6f00] DataFrames v1.8.1 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [9c0b9be8] Dataverse v0.2.7 [927a84f5] DelaunayTriangulation v1.6.6 [3c3547ce] DiskArrays v0.4.18 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.9 [460bff9d] ExceptionUnwrapping v0.1.11 [411431e0] Extents v0.1.6 [7a1cc6ca] FFTW v1.10.0 [5789e2e9] FileIO v1.17.1 [8fc22ac5] FilePaths v0.9.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.16.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [c58ffaec] FortranFiles v0.6.2 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.8 [68eda718] GeoFormatTypes v0.4.5 [cf35fbd7] GeoInterface v1.6.0 [61d90e0f] GeoJSON v0.8.4 [5c1252a2] GeometryBasics v0.5.10 [d7ba0133] Git v1.5.0 [c27321d9] Glob v1.4.0 [a2bd30eb] Graphics v1.1.3 [3955a311] GridLayoutBase v0.11.2 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] 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v4.0.1+0 [1d63c593] LLVMOpenMP_jll v18.1.8+0 [dd4b983a] LZO_jll v2.10.3+0 ⌅ [e9f186c6] Libffi_jll v3.4.7+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [4b2f31a3] Libmount_jll v2.41.2+0 [89763e89] Libtiff_jll v4.7.2+0 [38a345b3] Libuuid_jll v2.41.2+0 [5ced341a] Lz4_jll v1.10.1+0 [856f044c] MKL_jll v2025.2.0+0 [7cb0a576] MPICH_jll v4.3.2+0 [f1f71cc9] MPItrampoline_jll v5.5.4+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [e7412a2a] Ogg_jll v1.3.6+0 [6cdc7f73] OpenBLASConsistentFPCSR_jll v0.3.29+0 [18a262bb] OpenEXR_jll v3.4.4+0 [fe0851c0] OpenMPI_jll v5.0.9+0 [9bd350c2] OpenSSH_jll v10.2.1+0 [458c3c95] OpenSSL_jll v3.5.4+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [91d4177d] Opus_jll v1.6.0+0 [36c8627f] Pango_jll v1.57.0+0 ⌅ [30392449] Pixman_jll v0.44.2+0 [f50d1b31] Rmath_jll v0.5.1+0 ⌅ [02c8fc9c] XML2_jll v2.13.9+0 [ffd25f8a] XZ_jll v5.8.2+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [ea2f1a96] Xorg_libXrender_jll v0.9.12+0 [a65dc6b1] Xorg_libpciaccess_jll v0.18.1+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 [3161d3a3] Zstd_jll v1.5.7+1 [9a68df92] isoband_jll v0.2.3+0 [477f73a3] libaec_jll v1.1.4+0 [a4ae2306] libaom_jll v3.13.1+0 [0ac62f75] libass_jll v0.17.4+0 [f638f0a6] libfdk_aac_jll v2.0.4+0 [b53b4c65] libpng_jll v1.6.54+0 [075b6546] libsixel_jll v1.10.5+0 [f27f6e37] libvorbis_jll v1.3.8+0 [c5f90fcd] libwebp_jll v1.6.0+0 [337d8026] libzip_jll v1.11.3+0 [1317d2d5] oneTBB_jll v2022.0.0+1 ⌅ [1270edf5] x264_jll v10164.0.1+0 [dfaa095f] x265_jll v4.1.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [8bf52ea8] CRC32c v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.5+0 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling CairoMakie... 52167.5 ms ✓ TiffImages 9793.7 ms ✓ JpegTurbo 9289.2 ms ✓ Sixel 5345.7 ms ✓ ImageAxes 7346.0 ms ✓ WebP 3529.8 ms ✓ ImageMetadata 6409.9 ms ✓ Netpbm 331430.0 ms ✓ CairoMakie 8 dependencies successfully precompiled in 431 seconds. 261 already precompiled. Precompiling FilePathsURIsExt... 1100.9 ms ✓ FilePaths → FilePathsURIsExt 1 dependency successfully precompiled in 1 seconds. 12 already precompiled. Precompiling FilePathsGlobExt... 1045.8 ms ✓ FilePaths → FilePathsGlobExt 1 dependency successfully precompiled in 1 seconds. 12 already precompiled. Precompiling GeometryBasicsGeoInterfaceExt... 2866.6 ms ✓ GeometryBasics → GeometryBasicsGeoInterfaceExt 1 dependency successfully precompiled in 3 seconds. 35 already precompiled. Precompiling DistributionsTestExt... 4634.7 ms ✓ Distributions → DistributionsTestExt 1 dependency successfully precompiled in 7 seconds. 49 already precompiled. Precompiling MeshArraysMakieExt... 62148.0 ms ✓ GeoInterface → GeoInterfaceMakieExt 67667.6 ms ✓ MeshArrays → MeshArraysMakieExt 2 dependencies successfully precompiled in 135 seconds. 279 already precompiled. Precompiling GeoJSONMakieExt... 60394.9 ms ✓ GeoJSON → GeoJSONMakieExt 1 dependency successfully precompiled in 65 seconds. 270 already precompiled. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 377 running 1 of 1 signal (10): User defined signal 1 read at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) _os_read at /source/src/support/ios.c:106 ios_readprep at /source/src/support/ios.c:368 ios_eof_blocking at /source/src/support/ios.c:635 _eof_nolock at ./iostream.jl:233 [inlined] eof at ./iostream.jl:43 srctext_files at ./loading.jl:3535 _parse_cache_header at ./loading.jl:3368 parse_cache_header at ./loading.jl:3374 sort_by at ./loading.jl:1171 _broadcast_getindex_evalf at ./broadcast.jl:678 [inlined] _broadcast_getindex at ./broadcast.jl:651 [inlined] getindex at ./broadcast.jl:610 [inlined] macro expansion at ./broadcast.jl:973 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:972 [inlined] copyto! at ./broadcast.jl:925 [inlined] copy at ./broadcast.jl:897 [inlined] materialize at ./broadcast.jl:872 [inlined] find_all_in_cache_path at ./loading.jl:1191 find_all_in_cache_path at ./loading.jl:1146 [inlined] #28 at ./precompilation.jl:877 [inlined] get! at ./dict.jl:458 _precompilepkgs at ./precompilation.jl:877 #precompilepkgs#10 at ./precompilation.jl:411 unknown function (ip: 0x7b8e34924976) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 precompilepkgs at ./precompilation.jl:399 _require at ./loading.jl:2558 __require_prelocked at ./loading.jl:2388 jfptr___require_prelocked_71374.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] _require_prelocked at ./loading.jl:2375 [inlined] _require_prelocked at ./loading.jl:2374 [inlined] run_extension_callbacks at ./loading.jl:1544 run_extension_callbacks at ./loading.jl:1576 run_package_callbacks at ./loading.jl:1396 #_require_search_from_serialized#1105 at ./loading.jl:2065 _require_search_from_serialized at ./loading.jl:1969 jfptr__require_search_from_serialized_45031.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _require at ./loading.jl:2527 __require_prelocked at ./loading.jl:2388 jfptr___require_prelocked_71351.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] _require_prelocked at ./loading.jl:2375 macro expansion at ./loading.jl:2314 [inlined] macro expansion at ./lock.jl:273 [inlined] __require at ./loading.jl:2271 jfptr___require_71282.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_in_world at /source/src/builtins.c:894 #invoke_in_world#3 at ./essentials.jl:1089 [inlined] invoke_in_world at ./essentials.jl:1086 [inlined] require at ./loading.jl:2260 jfptr_require_71279.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] call_require at /source/src/toplevel.c:486 [inlined] eval_import_path at /source/src/toplevel.c:523 jl_toplevel_eval_flex at /source/src/toplevel.c:759 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./sysimg.jl:38 unknown function (ip: 0x7b8e34900082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7b8e35e58249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x721b1a966372) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x721b1a95b66d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x721b1a94fbf6) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x721b1a94f8fd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x721b1a94f2dd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x721b1a94b776) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 jfptr_include_47030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x721b1bedc249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007b8e28ffc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:524; _start() ╎ 1 @Base/client.jl:289; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:430; eval ╎ 1 @Base/sysimg.jl:38; include(fname::String) ╎ 1 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 @Base/loading.jl:2260; require(into::Module, mod::Symbol) ╎ ╎ 1 @Base/essentials.jl:1086; invoke_in_world ╎ ╎ 1 @Base/essentials.jl:1089; #invoke_in_world#3 ╎ ╎ 1 @Base/loading.jl:2271; __require(into::Module, mod::Symbol) ╎ ╎ ╎ 1 @Base/lock.jl:273; macro expansion ╎ ╎ ╎ 1 @Base/loading.jl:2314; macro expansion ╎ ╎ ╎ 1 @Base/loading.jl:2375; _require_prelocked(uuidkey::Base.PkgId,… ╎ ╎ ╎ 1 @Base/essentials.jl:1086; invoke_in_world ╎ ╎ ╎ 1 …ase/essentials.jl:1089; #invoke_in_world#3 ╎ ╎ ╎ ╎ 1 @Base/loading.jl:2388; __require_prelocked(uuidkey::Base.Pk… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:2527; _require(pkg::Base.PkgId, env::Stri… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1969; kwcall(::@NamedTuple{reasons::Dict… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:2065; _require_search_from_serialized(p… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1396; run_package_callbacks(modkey::Ba… ╎ ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1576; run_extension_callbacks(pkgid::… ╎ ╎ ╎ ╎ ╎ 1 @Base/loading.jl:1544; run_extension_callbacks(extid:… ╎ ╎ ╎ ╎ ╎ 1 …ase/loading.jl:2374; _require_prelocked ╎ ╎ ╎ ╎ ╎ 1 …ase/loading.jl:2375; _require_prelocked ╎ ╎ ╎ ╎ ╎ 1 …essentials.jl:1086; invoke_in_world ╎ ╎ ╎ ╎ ╎ ╎ 1 …essentials.jl:1089; #invoke_in_world#3 ╎ ╎ ╎ ╎ ╎ ╎ 1 …se/loading.jl:2388; __require_prelocked(uuidkey… ╎ ╎ ╎ ╎ ╎ ╎ 1 …e/loading.jl:2558; _require(pkg::Base.PkgId, e… ╎ ╎ ╎ ╎ ╎ ╎ 1 …mpilation.jl:399; kwcall(::@NamedTuple{_from_… ╎ ╎ ╎ ╎ ╎ ╎ 1 …mpilation.jl:411; precompilepkgs(pkgs::Vecto… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …pilation.jl:877; _precompilepkgs(pkgs::Vect… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …ase/dict.jl:458; get!(default::Base.Precom… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …pilation.jl:877; #28 ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …/loading.jl:1146; find_all_in_cache_path ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …/loading.jl:1191; find_all_in_cache_pat… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …roadcast.jl:872; materialize ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …roadcast.jl:897; copy ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …roadcast.jl:925; copyto! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …roadcast.jl:972; copyto! ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …simdloop.jl:77; macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +1 1 …roadcast.jl:973; macro expansion ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +2 1 …roadcast.jl:610; getindex ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +3 1 …roadcast.jl:651; _broadcast_getind… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +4 1 …roadcast.jl:678; _broadcast_getind… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +5 1 …/loading.jl:1171; (::Base.var"#sor… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +6 1 …/loading.jl:3411; parse_cache_head… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +7 1 …/loading.jl:3280; resolve_depot(in… ╎ ╎ ╎ ╎ ╎ ╎ ╎ ╎ +8 1 …ase/stat.jl:332; ispath(path::Stri… Precompiling ClimateModelsMakieExt... ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x0000721b0effc010 Total snapshots: 40. Utilization: 0% ╎40 @Base/client.jl:524; _start() ╎ 40 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 40 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 40 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path:… ╎ 40 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod:… ╎ 40 @Base/boot.jl:430; eval ╎ ╎ 40 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 40 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 40 @Pkg/src/API.jl:147; test ╎ ╎ 40 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 40 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 40 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 40 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 40 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 40 …src/Operations.jl:2011; test ╎ ╎ ╎ 40 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 40 …rc/Operations.jl:1841; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 40 …rc/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 40 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 40 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 40 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 40 …/Operations.jl:1902; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 40 …/Operations.jl:1793; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 40 …Operations.jl:1935; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 40 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 40 …Operations.jl:2086; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 40 …perations.jl:2146; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 40 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 40 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 40 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 40 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 40 …ase/task.jl:1021; wait() 39╎ ╎ ╎ ╎ ╎ ╎ ╎ 40 …ase/task.jl:1012; poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 [377] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Climatology/oQg3d/test/runtests.jl:1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 poptask at ./task.jl:1012 wait at ./task.jl:1021 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:582 #818 at ./asyncevent.jl:311 #1192 at ./Base.jl:622 jfptr_YY.818_67287.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 48091833 (Pool: 48090469; Big: 1364); GC: 47 jfptr_YY.1192_76260.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 24721045 (Pool: 24718591; Big: 2454); GC: 40 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#763 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") unsafe_write at ./stream.jl:1154 error at ./error.jl:35 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 #schedule#763 at ./task.jl:884 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x721b1a973496) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 _atexit at ./initdefs.jl:454 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 PkgEval terminated after 2724.45s: test duration exceeded the time limit