Package evaluation to test Catalyst on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T16:29:44.363 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.44s ################################################################################ # Installation # Installing Catalyst... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [479239e8] + Catalyst v15.0.11 Updating `~/.julia/environments/v1.11/Manifest.toml` [47edcb42] + ADTypes v1.21.0 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.43 [79e6a3ab] + Adapt v4.4.0 [66dad0bd] + AliasTables v1.1.3 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.22.0 [4c555306] + ArrayLayouts v1.12.2 [e2ed5e7c] + Bijections v0.2.2 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] + BlockArrays v1.9.3 [70df07ce] + BracketingNonlinearSolve v1.6.2 [2a0fbf3d] + CPUSummary v0.2.7 [479239e8] + Catalyst v15.0.11 [d360d2e6] + ChainRulesCore v1.26.0 [fb6a15b2] + CloseOpenIntervals v0.1.13 ⌅ [861a8166] + Combinatorics v1.0.2 ⌅ [a80b9123] + CommonMark v0.9.1 [38540f10] + CommonSolve v0.2.6 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.18.1 [b152e2b5] + CompositeTypes v0.1.4 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.6.0 [adafc99b] + CpuId v0.3.1 [9a962f9c] + DataAPI v1.16.0 ⌅ [864edb3b] + DataStructures v0.18.22 [2b5f629d] + DiffEqBase v6.199.0 [459566f4] + DiffEqCallbacks v4.12.0 [77a26b50] + DiffEqNoiseProcess v5.26.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.14 [8d63f2c5] + DispatchDoctor v0.4.27 [31c24e10] + Distributions v0.25.123 [ffbed154] + DocStringExtensions v0.9.5 [5b8099bc] + DomainSets v0.7.16 ⌃ [7c1d4256] + DynamicPolynomials v0.6.3 [06fc5a27] + DynamicQuantities v1.11.0 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.18 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.3.0 [1a297f60] + FillArrays v1.16.0 [64ca27bc] + FindFirstFunctions v1.7.0 [6a86dc24] + FiniteDiff v2.29.0 [1fa38f19] + Format v1.3.7 [f6369f11] + ForwardDiff v1.3.1 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [46192b85] + GPUArraysCore v0.2.0 [c27321d9] + Glob v1.4.0 ⌃ [86223c79] + Graphs v1.13.1 [34004b35] + HypergeometricFunctions v0.3.28 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [18e54dd8] + IntegerMathUtils v0.1.3 [8197267c] + IntervalSets v0.7.13 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.6 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.1 [ae98c720] + Jieko v0.2.1 [98e50ef6] + JuliaFormatter v2.2.0 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.21.0 [ba0b0d4f] + Krylov v0.10.3 [b964fa9f] + LaTeXStrings v1.4.0 [23fbe1c1] + Latexify v0.16.10 [10f19ff3] + LayoutPointers v0.1.17 [87fe0de2] + LineSearch v0.1.6 [7ed4a6bd] + LinearSolve v3.57.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e6f89c97] + LoggingExtras v1.2.0 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [e1d29d7a] + Missings v1.2.0 ⌅ [961ee093] + ModelingToolkit v9.84.0 [2e0e35c7] + Moshi v0.3.7 [46d2c3a1] + MuladdMacro v0.2.4 ⌃ [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.7 [77ba4419] + NaNMath v1.1.3 [8913a72c] + NonlinearSolve v4.14.0 [be0214bd] + NonlinearSolveBase v2.9.2 [5959db7a] + NonlinearSolveFirstOrder v1.11.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.12.0 [26075421] + NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] + OffsetArrays v1.17.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.37 [d96e819e] + Parameters v0.12.3 [e409e4f3] + PoissonRandom v0.4.7 [f517fe37] + Polyester v0.7.18 [1d0040c9] + PolyesterWeave v0.2.2 ⌃ [d236fae5] + PreallocationTools v0.4.34 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [27ebfcd6] + Primes v0.5.7 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [74087812] + Random123 v1.7.1 [e6cf234a] + RandomNumbers v1.6.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.44.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [ae5879a3] + ResettableStacks v1.2.0 [79098fc4] + Rmath v0.9.0 [7e49a35a] + RuntimeGeneratedFunctions v0.5.16 [9dfe8606] + SCCNonlinearSolve v1.9.0 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.134.0 [19f34311] + SciMLJacobianOperators v0.1.12 [a6db7da4] + SciMLLogging v1.8.0 [c0aeaf25] + SciMLOperators v1.14.1 [431bcebd] + SciMLPublic v1.0.1 [53ae85a6] + SciMLStructures v1.10.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.10.0 [699a6c99] + SimpleTraits v0.9.5 [a2af1166] + SortingAlgorithms v1.2.2 [276daf66] + SpecialFunctions v2.6.1 [aedffcd0] + Static v1.3.1 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.8.0 [2913bbd2] + StatsBase v0.34.10 [4c63d2b9] + StatsFuns v1.5.2 [7792a7ef] + StrideArraysCore v0.5.8 [2efcf032] + SymbolicIndexingInterface v0.3.46 ⌅ [19f23fe9] + SymbolicLimits v0.2.3 ⌅ [d1185830] + SymbolicUtils v3.32.0 ⌅ [0c5d862f] + Symbolics v6.58.0 [ed4db957] + TaskLocalValues v0.1.3 [8ea1fca8] + TermInterface v2.0.0 [1c621080] + TestItems v1.0.0 [8290d209] + ThreadingUtilities v0.5.5 [a759f4b9] + TimerOutputs v0.5.29 [410a4b4d] + Tricks v0.1.13 [781d530d] + TruncatedStacktraces v1.4.0 [5c2747f8] + URIs v1.6.1 [3a884ed6] + UnPack v1.0.2 [1986cc42] + Unitful v1.27.0 [a7c27f48] + Unityper v0.1.6 [61579ee1] + Ghostscript_jll v9.55.1+0 [1d5cc7b8] + IntelOpenMP_jll v2025.2.0+0 [aacddb02] + JpegTurbo_jll v3.1.4+0 [856f044c] + MKL_jll v2025.2.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [1317d2d5] + oneTBB_jll v2022.0.0+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.7.0+0 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 7.55s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 187975.6 ms ✓ DataInterpolations → DataInterpolationsSymbolicsExt 76886.4 ms ✓ OrdinaryDiffEqRosenbrock 79382.7 ms ? Catalyst 179793.1 ms ✓ OrdinaryDiffEqSDIRK 36184.8 ms ✓ OrdinaryDiffEqBDF 179220.4 ms ✓ OrdinaryDiffEqDefault 5 dependencies successfully precompiled in 763 seconds. 442 already precompiled. 1 dependencies failed but may be precompilable after restarting julia 1 dependency had output during precompilation: ┌ Catalyst │ WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(SparseArrays.SparseMatrixCSC{T, Ti} where Ti<:Integer) where {T<:Number} in module ChainRulesCoreSparseArraysExt at /home/pkgeval/.julia/packages/ChainRulesCore/Vsbj9/ext/ChainRulesCoreSparseArraysExt.jl:53 overwritten in module ChainRulesCoreSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 779.0s ################################################################################ # Testing # Testing Catalyst Status `/tmp/jl_15Qf5e/Project.toml` [479239e8] Catalyst v15.0.11 ⌅ [861a8166] Combinatorics v1.0.2 [82cc6244] DataInterpolations v8.9.0 ⌅ [864edb3b] DataStructures v0.18.22 [2b5f629d] DiffEqBase v6.199.0 [459566f4] DiffEqCallbacks v4.12.0 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.11.0 [4e289a0a] EnumX v1.0.5 ⌃ [86223c79] Graphs v1.13.1 [ccbc3e58] JumpProcesses v9.21.0 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [1914dd2f] MacroTools v0.5.16 ⌅ [961ee093] ModelingToolkit v9.84.0 [8913a72c] NonlinearSolve v4.14.0 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.13.0 ⌃ [50262376] OrdinaryDiffEqDefault v1.11.0 ⌃ [43230ef6] OrdinaryDiffEqRosenbrock v1.21.0 ⌃ [b1df2697] OrdinaryDiffEqTsit5 v1.8.0 ⌃ [79d7bb75] OrdinaryDiffEqVerner v1.9.0 [d96e819e] Parameters v0.12.3 [91a5bcdd] Plots v1.41.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [7e49a35a] RuntimeGeneratedFunctions v0.5.16 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.134.0 [efcf1570] Setfield v1.1.2 [860ef19b] StableRNGs v1.0.4 [90137ffa] StaticArrays v1.9.16 [10745b16] Statistics v1.11.1 [9672c7b4] SteadyStateDiffEq v2.9.0 [789caeaf] StochasticDiffEq v6.90.0 ⌅ [d1185830] SymbolicUtils v3.32.0 ⌅ [0c5d862f] Symbolics v6.58.0 [1986cc42] Unitful v1.27.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_15Qf5e/Manifest.toml` [47edcb42] ADTypes v1.21.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.43 [79e6a3ab] Adapt v4.4.0 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.22.0 [4c555306] ArrayLayouts v1.12.2 [e2ed5e7c] Bijections v0.2.2 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.9.3 [70df07ce] BracketingNonlinearSolve v1.6.2 [2a0fbf3d] CPUSummary v0.2.7 [479239e8] Catalyst v15.0.11 [d360d2e6] ChainRulesCore v1.26.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [35d6a980] ColorSchemes v3.31.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 ⌅ [861a8166] Combinatorics v1.0.2 ⌅ [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.6 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.18.1 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.6.0 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [82cc6244] DataInterpolations v8.9.0 ⌅ [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.199.0 [459566f4] DiffEqCallbacks v4.12.0 [77a26b50] DiffEqNoiseProcess v5.26.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.7.14 [8d63f2c5] DispatchDoctor v0.4.27 [31c24e10] Distributions v0.25.123 [ffbed154] DocStringExtensions v0.9.5 [5b8099bc] DomainSets v0.7.16 ⌃ [7c1d4256] DynamicPolynomials v0.6.3 [06fc5a27] DynamicQuantities v1.11.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.18 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [c87230d0] FFMPEG v0.4.5 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.3.0 [1a297f60] FillArrays v1.16.0 [64ca27bc] FindFirstFunctions v1.7.0 [6a86dc24] FiniteDiff v2.29.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [f6369f11] ForwardDiff v1.3.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [28b8d3ca] GR v0.73.20 [c27321d9] Glob v1.4.0 ⌃ [86223c79] Graphs v1.13.1 [42e2da0e] Grisu v1.0.2 [cd3eb016] HTTP v1.10.19 [34004b35] HypergeometricFunctions v0.3.28 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [18e54dd8] IntegerMathUtils v0.1.3 [8197267c] IntervalSets v0.7.13 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.6 [82899510] IteratorInterfaceExtensions v1.0.0 [1019f520] JLFzf v0.1.11 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.2.0 ⌅ [70703baa] JuliaSyntax v0.4.10 [ccbc3e58] JumpProcesses v9.21.0 [ba0b0d4f] Krylov v0.10.3 [b964fa9f] LaTeXStrings v1.4.0 [23fbe1c1] Latexify v0.16.10 [10f19ff3] LayoutPointers v0.1.17 [2d8b4e74] LevyArea v1.0.0 [87fe0de2] LineSearch v0.1.6 [7ed4a6bd] LinearSolve v3.57.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.2.0 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.4 [739be429] MbedTLS v1.1.9 [442fdcdd] Measures v0.3.3 [e1d29d7a] Missings v1.2.0 ⌅ [961ee093] ModelingToolkit v9.84.0 [2e0e35c7] Moshi v0.3.7 [46d2c3a1] MuladdMacro v0.2.4 ⌃ [102ac46a] MultivariatePolynomials v0.5.9 [d8a4904e] MutableArithmetics v1.6.7 [77ba4419] NaNMath v1.1.3 [8913a72c] NonlinearSolve v4.14.0 [be0214bd] NonlinearSolveBase v2.9.2 [5959db7a] NonlinearSolveFirstOrder v1.11.0 [9a2c21bd] NonlinearSolveQuasiNewton v1.12.0 [26075421] NonlinearSolveSpectralMethods v1.6.0 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.6.1 [bac558e1] OrderedCollections v1.8.1 ⌃ [6ad6398a] OrdinaryDiffEqBDF v1.13.0 ⌅ [bbf590c4] OrdinaryDiffEqCore v2.3.0 ⌃ [50262376] OrdinaryDiffEqDefault v1.11.0 ⌃ [4302a76b] OrdinaryDiffEqDifferentiation v1.21.0 ⌃ [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.18.1 ⌃ [43230ef6] OrdinaryDiffEqRosenbrock v1.21.0 ⌃ [2d112036] OrdinaryDiffEqSDIRK v1.10.0 ⌃ [b1df2697] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling Catalyst... Info Given Catalyst was explicitly requested, output will be shown live  WARNING: Method definition (::Type{ChainRulesCore.ProjectTo{P, D} where D<:(NamedTuple{names, T} where T<:Tuple where names) where P})(SparseArrays.SparseMatrixCSC{T, Ti} where Ti<:Integer) where {T<:Number} in module ChainRulesCoreSparseArraysExt at /home/pkgeval/.julia/packages/ChainRulesCore/Vsbj9/ext/ChainRulesCoreSparseArraysExt.jl:53 overwritten in module ChainRulesCoreSparseArraysExt on the same line (check for duplicate calls to `include`). ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 102400.2 ms ? Catalyst Test Summary: | Pass Total Time Reaction Structure | 95 95 17m32.7s 1052.890992 seconds (83.05 M allocations: 5.065 GiB, 0.34% gc time, 6.91% compilation time: <1% of which was recompilation) Precompiling OrdinaryDiffEqTsit5... 12146.0 ms ✓ OrdinaryDiffEqCore 4852.1 ms ✓ OrdinaryDiffEqCore → OrdinaryDiffEqCoreEnzymeCoreExt 15844.3 ms ✓ OrdinaryDiffEqTsit5 3 dependencies successfully precompiled in 35 seconds. 98 already precompiled. Precompiling OrdinaryDiffEqVerner... 78289.5 ms ✓ OrdinaryDiffEqVerner 1 dependency successfully precompiled in 80 seconds. 100 already precompiled. Precompiling StochasticDiffEq... 1591.2 ms ✓ LevyArea 4057.1 ms ✓ NonlinearSolveBase → NonlinearSolveBaseSparseMatrixColoringsExt 13958.1 ms ✓ OrdinaryDiffEqDifferentiation 8275.6 ms ✓ OrdinaryDiffEqDifferentiation → OrdinaryDiffEqDifferentiationSparseArraysExt 14136.1 ms ✓ OrdinaryDiffEqNonlinearSolve 22271.3 ms ✓ StochasticDiffEq 6 dependencies successfully precompiled in 71 seconds. 230 already precompiled. [ Info: Boundary condition species detected. As constraint equations are not currently supported when converting to SDESystems, the resulting system will be undetermined. Consider using constant species instead. ┌ Warning: JumpProblem(rn::ReactionSystem, prob, ...) is deprecated and will be removed in Catalyst 16. Use JumpProblem(JumpInputs(rn, ...), ...) instead. │ caller = top-level scope at reactionsystem.jl:674 └ @ Core ~/.julia/packages/Catalyst/DMVHG/test/reactionsystem_core/reactionsystem.jl:674 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 123 running 1 of 1 signal (10): User defined signal 1 _ZNK4llvm9SlotIndex8getIndexEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm9LiveRange13extendInBlockENS_8ArrayRefINS_9SlotIndexEEES2_S2_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13LiveRangeCalc16findReachingDefsERNS_9LiveRangeERNS_17MachineBasicBlockENS_9SlotIndexEjNS_8ArrayRefIS5_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13LiveRangeCalc6extendERNS_9LiveRangeENS_9SlotIndexEjNS_8ArrayRefIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm11SplitEditor15rewriteAssignedEb at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm11SplitEditor6finishEPNS_15SmallVectorImplIjEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8RAGreedy13tryBlockSplitERKNS_12LiveIntervalERNS_15AllocationOrderERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8RAGreedy8trySplitERKNS_12LiveIntervalERNS_15AllocationOrderERNS_15SmallVectorImplINS_8RegisterEEERKNS_8SmallSetIS7_Lj16ESt4lessIS7_EEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8RAGreedy17selectOrSplitImplERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEERNS_8SmallSetIS5_Lj16ESt4lessIS5_EEERNS_11SmallVectorISt4pairIPS2_NS_10MCRegisterEELj8EEEj at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8RAGreedy13selectOrSplitERKNS_12LiveIntervalERNS_15SmallVectorImplINS_8RegisterEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm12RegAllocBase16allocatePhysRegsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm8RAGreedy20runOnMachineFunctionERNS_15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) operator() at /source/src/jitlayers.cpp:1388 _ZN4llvm3orc14IRCompileLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16IRTransformLayer4emitESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EENS0_16ThreadSafeModuleE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc31BasicIRLayerMaterializationUnit11materializeESt10unique_ptrINS0_29MaterializationResponsibilityESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc19MaterializationTask3runEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm6detail18UniqueFunctionBaseIvJSt10unique_ptrINS_3orc4TaskESt14default_deleteIS4_EEEE8CallImplIPFvS7_EEEvPvRS7_ at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession22dispatchOutstandingMUsEv at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession17OL_completeLookupESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EESt10shared_ptrINS0_23AsynchronousSymbolQueryEESt8functionIFvRKNS_8DenseMapIPNS0_8JITDylibENS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISF_vEEEENSG_ISD_vEENS_6detail12DenseMapPairISD_SI_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc25InProgressFullLookupState8completeESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession19OL_applyQueryPhase1ESt10unique_ptrINS0_21InProgressLookupStateESt14default_deleteIS3_EENS_5ErrorE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupENS0_10LookupKindERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS8_EENS0_15SymbolLookupSetENS0_11SymbolStateENS_15unique_functionIFvNS_8ExpectedINS_8DenseMapINS0_15SymbolStringPtrENS_18JITEvaluatedSymbolENS_12DenseMapInfoISI_vEENS_6detail12DenseMapPairISI_SJ_EEEEEEEEESt8functionIFvRKNSH_IS6_NS_8DenseSetISI_SL_EENSK_IS6_vEENSN_IS6_SV_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) _ZN4llvm3orc16ExecutionSession6lookupERKSt6vectorISt4pairIPNS0_8JITDylibENS0_19JITDylibLookupFlagsEESaIS7_EENS0_15SymbolLookupSetENS0_10LookupKindENS0_11SymbolStateESt8functionIFvRKNS_8DenseMapIS5_NS_8DenseSetINS0_15SymbolStringPtrENS_12DenseMapInfoISI_vEEEENSJ_IS5_vEENS_6detail12DenseMapPairIS5_SL_EEEEEE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) addModule at /source/src/jitlayers.cpp:1875 jl_add_to_ee at /source/src/jitlayers.cpp:2306 _jl_compile_codeinst at /source/src/jitlayers.cpp:277 jl_generate_fptr_impl at /source/src/jitlayers.cpp:536 jl_compile_method_internal at /source/src/gf.c:2538 [inlined] jl_compile_method_internal at /source/src/gf.c:2425 _jl_invoke at /source/src/gf.c:2943 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #process_SciMLProblem#821 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1422 unknown function (ip: 0x70184c1fa7ea) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 process_SciMLProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/problem_utils.jl:1262 #_#1250 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:806 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:781 unknown function (ip: 0x70184c1f753a) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #_#1248 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:774 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:773 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 #ODEProblem#1246 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:763 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_apply at /source/src/builtins.c:831 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/diffeqs/abstractodesystem.jl:762 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #ODEProblem#1546 at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/jumps/jumpsystem.jl:506 ODEProblem at /home/pkgeval/.julia/packages/ModelingToolkit/aiAqm/src/systems/jumps/jumpsystem.jl:489 unknown function (ip: 0x70184c1edc62) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #JumpInputs#180 at /home/pkgeval/.julia/packages/Catalyst/DMVHG/src/reactionsystem_conversions.jl:996 JumpInputs at /home/pkgeval/.julia/packages/Catalyst/DMVHG/src/reactionsystem_conversions.jl:987 unknown function (ip: 0x70184c1e5f32) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_body at /source/src/interpreter.c:562 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 jfptr_include_47030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] jl_f__call_latest at /source/src/builtins.c:875 include at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 unknown function (ip: 0x7018589a28a2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_eval_module_expr at /source/src/toplevel.c:215 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:743 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 jfptr_eval_28361.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 macro expansion at /home/pkgeval/.julia/packages/SafeTestsets/raUNr/src/SafeTestsets.jl:28 [inlined] macro expansion at ./timing.jl:581 [inlined] macro expansion at /home/pkgeval/.julia/packages/Catalyst/DMVHG/test/runtests.jl:20 [inlined] macro expansion at ./timing.jl:581 [inlined] top-level scope at /home/pkgeval/.julia/packages/Catalyst/DMVHG/test/runtests.jl:315 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_invoke at /source/src/gf.c:2958 jl_toplevel_eval_flex at /source/src/toplevel.c:934 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./sysimg.jl:38 unknown function (ip: 0x701872d00082) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] exec_options at ./client.jl:289 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7018742b0249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`. └ @ Catalyst ~/.julia/packages/Catalyst/DMVHG/src/reactionsystem_conversions.jl:998 ┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`. └ @ Catalyst ~/.julia/packages/Catalyst/DMVHG/src/reactionsystem_conversions.jl:998 ┌ Warning: JumpInputs has detected the system includes ODEs, variable rate jumps, or continuous events. Please note that currently remake does not work for such problems, and both JumpInputs and then JumpProblem must be called again if you wish to change any parameter or initial condition values. This warning can be disabled by passing JumpInputs the keyword argument `remake_warn = false`. └ @ Catalyst ~/.julia/packages/Catalyst/DMVHG/src/reactionsystem_conversions.jl:998 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 1 signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] wait at ./process.jl:694 wait at ./process.jl:687 unknown function (ip: 0x73deb23671f2) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 subprocess_handler at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2146 #131 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2086 withenv at ./env.jl:265 #118 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1935 with_temp_env at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1793 #116 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1902 #mktempdir#28 at ./file.jl:819 unknown function (ip: 0x73deb235f93d) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 mktempdir at ./file.jl:815 mktempdir at ./file.jl:815 [inlined] #sandbox#115 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1849 [inlined] sandbox at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:1841 unknown function (ip: 0x73deb2353eca) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#128 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2067 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] #test#146 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:460 unknown function (ip: 0x73deb2353bcd) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 #test#77 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 unknown function (ip: 0x73deb23535ad) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:148 #test#75 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] #test#74 at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] test at /source/usr/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 unknown function (ip: 0x73deb234fa46) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] do_call at /source/src/interpreter.c:126 eval_value at /source/src/interpreter.c:223 eval_stmt_value at /source/src/interpreter.c:174 [inlined] eval_body at /source/src/interpreter.c:670 eval_body at /source/src/interpreter.c:539 eval_body at /source/src/interpreter.c:539 jl_interpret_toplevel_thunk at /source/src/interpreter.c:824 jl_toplevel_eval_flex at /source/src/toplevel.c:943 jl_toplevel_eval_flex at /source/src/toplevel.c:886 ijl_toplevel_eval_in at /source/src/toplevel.c:994 eval at ./boot.jl:430 [inlined] include_string at ./loading.jl:2777 _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _include at ./loading.jl:2837 include at ./Base.jl:562 jfptr_include_47030.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 exec_options at ./client.jl:316 _start at ./client.jl:524 jfptr__start_73686.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] true_main at /source/src/jlapi.c:900 jl_repl_entrypoint at /source/src/jlapi.c:1059 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x73deb392e249) __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) unknown function (ip: (nil)) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x000073dea69fc010 Total snapshots: 99. Utilization: 0% ╎99 @Base/client.jl:524; _start() ╎ 99 @Base/client.jl:316; exec_options(opts::Base.JLOptions) ╎ 99 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ 99 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path:… ╎ 99 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod:… ╎ 99 @Base/boot.jl:430; eval ╎ ╎ 99 @Pkg/src/API.jl:146; kwcall(::@NamedTuple{julia_args::Cmd}, ::typeo… ╎ ╎ 99 @Pkg/src/API.jl:146; #test#74 ╎ ╎ 99 @Pkg/src/API.jl:147; test ╎ ╎ 99 @Pkg/src/API.jl:147; #test#75 ╎ ╎ 99 @Pkg/src/API.jl:148; kwcall(::@NamedTuple{julia_args::Cmd}, ::t… ╎ ╎ ╎ 99 @Pkg/src/API.jl:159; test(pkgs::Vector{Pkg.Types.PackageSpec};… ╎ ╎ ╎ 99 @Pkg/src/API.jl:460; kwcall(::@NamedTuple{julia_args::Cmd, io… ╎ ╎ ╎ 99 @Pkg/src/API.jl:481; test(ctx::Pkg.Types.Context, pkgs::Vect… ╎ ╎ ╎ 99 …src/Operations.jl:2011; test ╎ ╎ ╎ 99 …src/Operations.jl:2067; test(ctx::Pkg.Types.Context, pkgs… ╎ ╎ ╎ ╎ 99 …rc/Operations.jl:1841; kwcall(::@NamedTuple{preferences:… ╎ ╎ ╎ ╎ 99 …rc/Operations.jl:1849; #sandbox#115 ╎ ╎ ╎ ╎ 99 @Base/file.jl:815; mktempdir ╎ ╎ ╎ ╎ 99 @Base/file.jl:815; mktempdir(fn::Function, parent::Str… ╎ ╎ ╎ ╎ 99 @Base/file.jl:819; mktempdir(fn::Pkg.Operations.var"#… ╎ ╎ ╎ ╎ ╎ 99 …/Operations.jl:1902; (::Pkg.Operations.var"#116#121… ╎ ╎ ╎ ╎ ╎ 99 …/Operations.jl:1793; with_temp_env(fn::Pkg.Operati… ╎ ╎ ╎ ╎ ╎ 99 …Operations.jl:1935; (::Pkg.Operations.var"#118#12… ╎ ╎ ╎ ╎ ╎ 99 @Base/env.jl:265; withenv(::Pkg.Operations.var"#1… ╎ ╎ ╎ ╎ ╎ 99 …Operations.jl:2086; (::Pkg.Operations.var"#131#… ╎ ╎ ╎ ╎ ╎ ╎ 99 …perations.jl:2146; subprocess_handler(cmd::Cmd… ╎ ╎ ╎ ╎ ╎ ╎ 99 …e/process.jl:687; wait(x::Base.Process) ╎ ╎ ╎ ╎ ╎ ╎ 99 …e/process.jl:694; wait(x::Base.Process, sync… ╎ ╎ ╎ ╎ ╎ ╎ 99 …ondition.jl:125; wait ╎ ╎ ╎ ╎ ╎ ╎ 99 …ondition.jl:130; wait(c::Base.GenericCondi… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 99 …ase/task.jl:1021; wait() 98╎ ╎ ╎ ╎ ╎ ╎ ╎ 99 …ase/task.jl:1012; poptask(W::Base.Intrus… [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:522 [123] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Catalyst/DMVHG/test/reactionsystem_core/reactionsystem.jl:1082 poptask at ./task.jl:1012 wait at ./task.jl:1021 _ZL9isAlignedPKN4llvm5ValueERKNS_5APIntENS_5AlignERKNS_10DataLayoutE at /opt/julia/bin/../lib/julia/libLLVM-16jl.so (unknown line) unknown function (ip: 0x7ffed4689d6f) unknown function (ip: 0x70180000003f) unknown function (ip: (nil)) Allocations: 340157962 (Pool: 340150476; Big: 7486); GC: 241 ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.11/Profile/src/Profile.jl:1240 Overhead ╎ [+additional indent] Count File:Line; Function ========================================================= Thread 1 Task 0x00007018673fc010 Total snapshots: 1. Utilization: 100% ╎1 @Base/client.jl:524; _start() ╎ 1 @Base/client.jl:289; exec_options(opts::Base.JLOptions) ╎ 1 @Base/boot.jl:430; eval ╎ 1 @Base/sysimg.jl:38; include(fname::String) ╎ 1 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Module, _path::… ╎ 1 @Base/loading.jl:2777; include_string(mapexpr::typeof(identity), mod::… ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ 1 …lyst/test/runtests.jl:315; top-level scope ╎ ╎ 1 @Base/timing.jl:581; macro expansion ╎ ╎ 1 …lyst/test/runtests.jl:20; macro expansion ╎ ╎ 1 @Base/timing.jl:581; macro expansion ╎ ╎ ╎ 1 …/src/SafeTestsets.jl:28; macro expansion ╎ ╎ ╎ 1 @Base/boot.jl:430; eval(m::Module, e::Any) ╎ ╎ ╎ 1 …src/SafeTestsets.jl:28; include(x::String) ╎ ╎ ╎ 1 @Base/Base.jl:562; include(mod::Module, _path::String) ╎ ╎ ╎ 1 @Base/loading.jl:2837; _include(mapexpr::Function, mod::Modu… ╎ ╎ ╎ ╎ 1 @Base/loading.jl:2777; include_string(mapexpr::typeof(ident… ╎ ╎ ╎ ╎ 1 @Base/boot.jl:430; eval ╎ ╎ ╎ ╎ 1 …em_conversions.jl:987; Catalyst.JumpInputs(rs::Catalyst.… ╎ ╎ ╎ ╎ 1 …m_conversions.jl:996; Catalyst.JumpInputs(rs::Catalyst.… ╎ ╎ ╎ ╎ 1 …ps/jumpsystem.jl:489; SciMLBase.ODEProblem(sys::Modeli… ╎ ╎ ╎ ╎ ╎ 1 …s/jumpsystem.jl:506; SciMLBase.ODEProblem(sys::Modeli… ╎ ╎ ╎ ╎ ╎ 1 …actodesystem.jl:762; kwcall(::@NamedTuple{check_leng… ╎ ╎ ╎ ╎ ╎ 1 …actodesystem.jl:763; SciMLBase.ODEProblem(::Modelin… ╎ ╎ ╎ ╎ ╎ 1 …ctodesystem.jl:773; kwcall(::@NamedTuple{check_len… ╎ ╎ ╎ ╎ ╎ 1 …ctodesystem.jl:774; (SciMLBase.ODEProblem{true})(… ╎ ╎ ╎ ╎ ╎ ╎ 1 …todesystem.jl:781; kwcall(::@NamedTuple{check_le… ╎ ╎ ╎ ╎ ╎ ╎ 1 …todesystem.jl:806; (SciMLBase.ODEProblem{true, … ╎ ╎ ╎ ╎ ╎ ╎ 1 …lem_utils.jl:1262; kwcall(::@NamedTuple{t::Flo… ╎ ╎ ╎ ╎ ╎ ╎ 1 …lem_utils.jl:1422; process_SciMLProblem(const… ╎ ╎ ╎ ╎ ╎ ╎ 1 …odesystem.jl:352; kwcall(::@NamedTuple{p::Mo… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …desystem.jl:372; (SciMLBase.ODEFunction{tru… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …desystem.jl:196; generate_function ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …desystem.jl:224; generate_function(sys::M… ╎ ╎ ╎ ╎ ╎ ╎ ╎ 1 …en_utils.jl:130; kwcall(::@NamedTuple{ex… #wait#733 at ./condition.jl:130 wait at ./condition.jl:125 [inlined] _trywait at ./asyncevent.jl:145 profile_printing_listener at ./Base.jl:582 #1192 at ./Base.jl:622 jfptr_YY.1192_76260.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] start_task at /source/src/task.c:1204 unknown function (ip: (nil)) Allocations: 27149277 (Pool: 27148148; Big: 1129); GC: 30 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:35 #schedule#763 at ./task.jl:884 schedule at ./task.jl:876 [inlined] uv_writecb_task at ./stream.jl:1200 jfptr_uv_writecb_task_67137.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jlcapi_uv_writecb_task_67601.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_task_get_next at /source/src/scheduler.c:522 poptask at ./task.jl:1012 wait at ./task.jl:1021 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:248 [inlined] print at ./strings/io.jl:250 jfptr_print_48487.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 showerror at ./errorshow.jl:152 unknown function (ip: 0x73deb2374316) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 _atexit at ./initdefs.jl:454 jfptr__atexit_69645.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:2951 [inlined] ijl_apply_generic at /source/src/gf.c:3128 jl_apply at /source/src/julia.h:2157 [inlined] ijl_atexit_hook at /source/src/init.c:271 jl_exit_thread0_cb at /source/src/signals-unix.c:517 PkgEval terminated after 2722.29s: test duration exceeded the time limit