Package evaluation to test BioSequenceMappings on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T05:14:29.926 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 6.16s ################################################################################ # Installation # Installing BioSequenceMappings... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [a84bc454] + BioSequenceMappings v0.1.7 Updating `~/.julia/environments/v1.11/Manifest.toml` [79e6a3ab] + Adapt v4.4.0 [dce04be8] + ArgCheck v2.5.0 [a9b6321e] + Atomix v1.1.2 [67c07d97] + Automa v1.1.0 [47718e42] + BioGenerics v0.1.5 [a84bc454] + BioSequenceMappings v0.1.7 [d360d2e6] + ChainRulesCore v1.26.0 [34da2185] + Compat v4.18.1 [c2308a5c] + FASTX v2.1.7 [46192b85] + GPUArraysCore v0.2.0 [076d061b] + HashArrayMappedTries v0.2.0 [63c18a36] + KernelAbstractions v0.9.39 [1914dd2f] + MacroTools v0.5.16 [872c559c] + NNlib v0.9.33 [0b1bfda6] + OneHotArrays v0.2.10 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [92933f4c] + ProgressMeter v1.11.0 [ae029012] + Requires v1.3.1 [fdea26ae] + SIMD v3.7.2 [7e506255] + ScopedValues v1.5.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [10745b16] + Statistics v1.11.1 [354b36f9] + StringViews v1.3.6 [3bb67fe8] + TranscodingStreams v0.11.3 [013be700] + UnsafeAtomics v0.3.0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [4536629a] + OpenBLAS_jll v0.3.27+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.7s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompiling project... 5928.9 ms ✓ BioSequenceMappings 1 dependency successfully precompiled in 7 seconds. 68 already precompiled. Precompilation completed after 18.88s ################################################################################ # Testing # Testing BioSequenceMappings Status `/tmp/jl_VJa8gb/Project.toml` [4c88cf16] Aqua v0.8.14 [6e4b80f9] BenchmarkTools v1.6.3 [a84bc454] BioSequenceMappings v0.1.7 [e41cd558] DCAUtils v1.1.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_VJa8gb/Manifest.toml` [79e6a3ab] Adapt v4.4.0 [4c88cf16] Aqua v0.8.14 [dce04be8] ArgCheck v2.5.0 [a9b6321e] Atomix v1.1.2 [67c07d97] Automa v1.1.0 [6e4b80f9] BenchmarkTools v1.6.3 [47718e42] BioGenerics v0.1.5 [a84bc454] BioSequenceMappings v0.1.7 [d360d2e6] ChainRulesCore v1.26.0 [34da2185] Compat v4.18.1 [e41cd558] DCAUtils v1.1.0 [c2308a5c] FASTX v2.1.7 [a0c94c4b] FastaIO v1.1.0 [46192b85] GPUArraysCore v0.2.0 [92fee26a] GZip v0.6.2 [076d061b] HashArrayMappedTries v0.2.0 [682c06a0] JSON v1.4.0 [63c18a36] KernelAbstractions v0.9.39 [1914dd2f] MacroTools v0.5.16 [872c559c] NNlib v0.9.33 [0b1bfda6] OneHotArrays v0.2.10 [69de0a69] Parsers v2.8.3 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [92933f4c] ProgressMeter v1.11.0 [ae029012] Requires v1.3.1 [fdea26ae] SIMD v3.7.2 [7e506255] ScopedValues v1.5.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [10745b16] Statistics v1.11.1 [354b36f9] StringViews v1.3.6 [ec057cc2] StructUtils v2.6.2 [3bb67fe8] TranscodingStreams v0.11.3 [013be700] UnsafeAtomics v0.3.0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... # Alphabet # Alignment ┌ Warning: I should write a test for `find_sequence` and `match_sequences` └ @ Main ~/.julia/packages/BioSequenceMappings/qk3CM/test/alignments/methods.jl:16 # IO [ Info: Tests: warning will be produced below ┌ Warning: Could not find a default alphabet for characters ['-', '.', 'A', 'C', 'G'] │ Using Alphabet{Char,Int64}: ['-', '.', 'A', 'C', 'G'] └ @ BioSequenceMappings ~/.julia/packages/BioSequenceMappings/qk3CM/src/IO.jl:62 Test Summary: | Pass Total Time BioSequenceMappings.jl | 165 165 1m02.5s Test Summary: | Pass Total Time Aqua.jl | 11 11 52.8s Testing BioSequenceMappings tests passed Testing completed after 128.02s PkgEval succeeded after 165.26s