Package evaluation to test AtomsBuilder on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T07:45:07.565 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Activating project at `~/.julia/environments/v1.11` Set-up completed after 8.9s ################################################################################ # Installation # Installing AtomsBuilder... Resolving package versions... Updating `~/.julia/environments/v1.11/Project.toml` [f5cc8831] + AtomsBuilder v0.2.3 Updating `~/.julia/environments/v1.11/Manifest.toml` [a963bdd2] + AtomsBase v0.5.2 [f5cc8831] + AtomsBuilder v0.2.3 [1692102d] + AtomsIO v0.3.0 [d1d4a3ce] + BitFlags v0.1.9 [46823bd8] + Chemfiles v0.10.43 [944b1d66] + CodecZlib v0.7.8 [f0e56b4a] + ConcurrentUtilities v2.5.0 [ffbed154] + DocStringExtensions v0.9.5 [460bff9d] + ExceptionUnwrapping v0.1.11 [352459e4] + ExtXYZ v0.2.2 [cd3eb016] + HTTP v1.10.19 [692b3bcd] + JLLWrappers v1.7.1 [682c06a0] + JSON v1.4.0 [9c8b4983] + LightXML v0.9.3 [e6f89c97] + LoggingExtras v1.2.0 [739be429] + MbedTLS v1.1.9 [4d8831e6] + OpenSSL v1.6.1 [69de0a69] + Parsers v2.8.3 [7b2266bf] + PeriodicTable v1.2.1 ⌅ [aea7be01] + PrecompileTools v1.2.1 [21216c6a] + Preferences v1.5.1 [30e472fa] + PubChemCrawler v1.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [777ac1f9] + SimpleBufferStream v1.2.0 [90137ffa] + StaticArrays v1.9.16 [1e83bf80] + StaticArraysCore v1.4.4 [ec057cc2] + StructUtils v2.6.2 [3bb67fe8] + TranscodingStreams v0.11.3 [5c2747f8] + URIs v1.6.1 [1986cc42] + Unitful v1.27.0 [a7773ee8] + UnitfulAtomic v1.0.0 [78a364fa] + Chemfiles_jll v0.10.4+0 [94ce4f54] + Libiconv_jll v1.18.0+0 [458c3c95] + OpenSSL_jll v3.5.4+0 [02c8fc9c] + XML2_jll v2.15.1+0 [6ecdc6fc] + extxyz_jll v0.1.3+0 [cdc7adba] + libcleri_jll v0.12.1+3 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.6.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.2.0 [44cfe95a] + Pkg v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] + LibCURL_jll v8.6.0+0 [e37daf67] + LibGit2_jll v1.7.2+0 [29816b5a] + LibSSH2_jll v1.11.0+1 [c8ffd9c3] + MbedTLS_jll v2.28.6+0 [14a3606d] + MozillaCACerts_jll v2023.12.12 [4536629a] + OpenBLAS_jll v0.3.27+1 [efcefdf7] + PCRE2_jll v10.42.0+1 [83775a58] + Zlib_jll v1.2.13+1 [8e850b90] + libblastrampoline_jll v5.11.0+0 [8e850ede] + nghttp2_jll v1.59.0+0 [3f19e933] + p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.47s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 17.99s ################################################################################ # Testing # Testing AtomsBuilder Status `/tmp/jl_j7fWHL/Project.toml` [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [1692102d] AtomsIO v0.3.0 [682c06a0] JSON v1.4.0 [30e472fa] PubChemCrawler v1.4.0 [90137ffa] StaticArrays v1.9.16 [1986cc42] Unitful v1.27.0 [37e2e46d] LinearAlgebra v1.11.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_j7fWHL/Manifest.toml` [a963bdd2] AtomsBase v0.5.2 [f5cc8831] AtomsBuilder v0.2.3 [1692102d] AtomsIO v0.3.0 [d1d4a3ce] BitFlags v0.1.9 [46823bd8] Chemfiles v0.10.43 [944b1d66] CodecZlib v0.7.8 [f0e56b4a] ConcurrentUtilities v2.5.0 [ffbed154] DocStringExtensions v0.9.5 [460bff9d] ExceptionUnwrapping v0.1.11 [352459e4] ExtXYZ v0.2.2 [cd3eb016] HTTP v1.10.19 [692b3bcd] JLLWrappers v1.7.1 [682c06a0] JSON v1.4.0 [9c8b4983] LightXML v0.9.3 [e6f89c97] LoggingExtras v1.2.0 [739be429] MbedTLS v1.1.9 [4d8831e6] OpenSSL v1.6.1 [69de0a69] Parsers v2.8.3 [7b2266bf] PeriodicTable v1.2.1 ⌅ [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.5.1 [30e472fa] PubChemCrawler v1.4.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [777ac1f9] SimpleBufferStream v1.2.0 [90137ffa] StaticArrays v1.9.16 [1e83bf80] StaticArraysCore v1.4.4 [ec057cc2] StructUtils v2.6.2 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.6.1 [1986cc42] Unitful v1.27.0 [a7773ee8] UnitfulAtomic v1.0.0 [78a364fa] Chemfiles_jll v0.10.4+0 [94ce4f54] Libiconv_jll v1.18.0+0 [458c3c95] OpenSSL_jll v3.5.4+0 [02c8fc9c] XML2_jll v2.15.1+0 [6ecdc6fc] extxyz_jll v0.1.3+0 [cdc7adba] libcleri_jll v0.12.1+3 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [efcefdf7] PCRE2_jll v10.42.0+1 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... PubChem inteface: Error During Test at /home/pkgeval/.julia/packages/AtomsBuilder/RmS3e/test/test_pubchem.jl:5 Got exception outside of a @test HTTP.RequestError: HTTP.Request: HTTP.Messages.Request: """ POST /rest/pug/compound/cid/SDF?record_type=3d HTTP/1.1 Content-Type: application/x-www-form-urlencoded Host: pubchem.ncbi.nlm.nih.gov Accept: */* User-Agent: HTTP.jl/1.11.8 Content-Length: 7 Accept-Encoding: gzip Cookie: ****** cid=962"""Underlying error: IOError: unsafe_write requires ssl to be open Stacktrace: [1] (::HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ConnectionRequest.jl:143 [2] connections @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ConnectionRequest.jl:60 [inlined] [3] (::Base.var"#106#108"{Base.var"#106#107#109"{ExponentialBackOff, HTTP.RetryRequest.var"#2#5"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ Base ./error.jl:300 [4] (::HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.RetryRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RetryRequest.jl:75 [5] manageretries @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RetryRequest.jl:30 [inlined] [6] (::HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.CookieRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/CookieRequest.jl:42 [7] managecookies @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/CookieRequest.jl:19 [inlined] [8] (::HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) @ HTTP.HeadersRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/HeadersRequest.jl:71 [9] defaultheaders @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/HeadersRequest.jl:14 [inlined] [10] (::HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) @ HTTP.RedirectRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RedirectRequest.jl:25 [11] redirects @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RedirectRequest.jl:14 [inlined] [12] (::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Vector{Pair{String, String}}, body::String; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) @ HTTP.MessageRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/MessageRequest.jl:35 [13] makerequest @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/MessageRequest.jl:24 [inlined] [14] request(stack::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Vector{Pair{String, String}}, b::String, q::Nothing; headers::Vector{Pair{String, String}}, body::String, query::Nothing, kw::@Kwargs{}) @ HTTP ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:457 [15] request(stack::Function, method::String, url::String, h::Vector{Pair{String, String}}, b::String, q::Nothing) @ HTTP ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:455 [16] #request#20 @ ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:315 [inlined] [17] request @ ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:313 [inlined] [18] get_for_cids(cids::Vector{Int64}; properties::Nothing, xrefs::Nothing, cids_type::Nothing, record_type::String, output::String, kwargs::@Kwargs{}) @ PubChemCrawler ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:212 [19] get_for_cids @ ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:187 [inlined] [20] get_for_cids @ ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:216 [inlined] [21] (::AtomsBuilder.var"#22#23"{Int64})(io::IOStream) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:37 [22] open(::AtomsBuilder.var"#22#23"{Int64}, ::String, ::Vararg{String}; kwargs::@Kwargs{}) @ Base ./io.jl:410 [23] open @ ./io.jl:407 [inlined] [24] load_from_pubchem(cid::Int64) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:36 [25] load_from_pubchem(name::String) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:47 [26] macro expansion @ ~/.julia/packages/AtomsBuilder/RmS3e/test/test_pubchem.jl:6 [inlined] [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [28] top-level scope @ ~/.julia/packages/AtomsBuilder/RmS3e/test/test_pubchem.jl:6 [29] include(fname::String) @ Main ./sysimg.jl:38 [30] macro expansion @ ~/.julia/packages/AtomsBuilder/RmS3e/test/runtests.jl:8 [inlined] [31] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [32] top-level scope @ ~/.julia/packages/AtomsBuilder/RmS3e/test/runtests.jl:6 [33] include(fname::String) @ Main ./sysimg.jl:38 [34] top-level scope @ none:6 caused by: TaskFailedException nested task error: IOError: unsafe_write requires ssl to be open Stacktrace: [1] throwio(op::Symbol) @ OpenSSL ~/.julia/packages/OpenSSL/2SUGA/src/ssl.jl:435 [2] macro expansion @ ~/.julia/packages/OpenSSL/2SUGA/src/ssl.jl:445 [inlined] [3] macro expansion @ ./lock.jl:273 [inlined] [4] unsafe_write(ssl::OpenSSL.SSLStream, in_buffer::Ptr{UInt8}, in_length::UInt64) @ OpenSSL ~/.julia/packages/OpenSSL/2SUGA/src/ssl.jl:443 [5] unsafe_write @ ~/.julia/packages/HTTP/ShTJs/src/Connections.jl:132 [inlined] [6] unsafe_write(http::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}, p::Ptr{UInt8}, n::UInt64) @ HTTP.Streams ~/.julia/packages/HTTP/ShTJs/src/Streams.jl:93 [7] write @ ./strings/io.jl:248 [inlined] [8] write(io::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}, s::Base.CodeUnits{UInt8, String}) @ Base ./strings/basic.jl:807 [9] writebody(stream::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}, req::HTTP.Messages.Request, lock::ReentrantLock) @ HTTP.StreamRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/StreamRequest.jl:92 [10] macro expansion @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/StreamRequest.jl:41 [inlined] [11] (::HTTP.StreamRequest.var"#2#4"{HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}, Float64, HTTP.Messages.Request, ReentrantLock})() @ HTTP.StreamRequest ~/.julia/packages/ConcurrentUtilities/ofY4K/src/ConcurrentUtilities.jl:10 ...and 1 more exception. Stacktrace: [1] sync_end(c::Channel{Any}) @ Base ./task.jl:466 [2] macro expansion @ ./task.jl:499 [inlined] [3] streamlayer(stream::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}; iofunction::Nothing, decompress::Nothing, logerrors::Bool, logtag::Nothing, timedout::Nothing, kw::@Kwargs{verbose::Int64}) @ HTTP.StreamRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/StreamRequest.jl:35 [4] streamlayer @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/StreamRequest.jl:21 [inlined] [5] (::HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}})(stream::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}; status_exception::Bool, timedout::Nothing, logerrors::Bool, logtag::Nothing, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.ExceptionRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ExceptionRequest.jl:14 [6] exceptions @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ExceptionRequest.jl:13 [inlined] [7] (::HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}})(stream::HTTP.Streams.Stream{HTTP.Messages.Response, HTTP.Connections.Connection{OpenSSL.SSLStream}}; readtimeout::Int64, logerrors::Bool, logtag::Nothing, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.TimeoutRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/TimeoutRequest.jl:18 [8] (::HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}})(req::HTTP.Messages.Request; proxy::Nothing, socket_type::Type, socket_type_tls::Nothing, readtimeout::Int64, connect_timeout::Int64, logerrors::Bool, logtag::Nothing, closeimmediately::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.ConnectionRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ConnectionRequest.jl:122 [9] connections @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/ConnectionRequest.jl:60 [inlined] [10] (::Base.var"#106#108"{Base.var"#106#107#109"{ExponentialBackOff, HTTP.RetryRequest.var"#2#5"{Int64, typeof(HTTP.RetryRequest.FALSE), HTTP.Messages.Request, Base.RefValue{Int64}}, HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(args::HTTP.Messages.Request; kwargs::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ Base ./error.jl:300 [11] (::HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}})(req::HTTP.Messages.Request; retry::Bool, retries::Int64, retry_delays::ExponentialBackOff, retry_check::Function, retry_non_idempotent::Bool, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.RetryRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RetryRequest.jl:75 [12] manageretries @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RetryRequest.jl:30 [inlined] [13] (::HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}})(req::HTTP.Messages.Request; cookies::Bool, cookiejar::HTTP.Cookies.CookieJar, kw::@Kwargs{iofunction::Nothing, decompress::Nothing, verbose::Int64}) @ HTTP.CookieRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/CookieRequest.jl:42 [14] managecookies @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/CookieRequest.jl:19 [inlined] [15] (::HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}})(req::HTTP.Messages.Request; iofunction::Nothing, decompress::Nothing, basicauth::Bool, detect_content_type::Bool, canonicalize_headers::Bool, kw::@Kwargs{verbose::Int64}) @ HTTP.HeadersRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/HeadersRequest.jl:71 [16] defaultheaders @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/HeadersRequest.jl:14 [inlined] [17] (::HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}})(req::HTTP.Messages.Request; redirect::Bool, redirect_limit::Int64, redirect_method::Nothing, forwardheaders::Bool, response_stream::Nothing, kw::@Kwargs{verbose::Int64}) @ HTTP.RedirectRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RedirectRequest.jl:25 [18] redirects @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/RedirectRequest.jl:14 [inlined] [19] (::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}})(method::String, url::URIs.URI, headers::Vector{Pair{String, String}}, body::String; copyheaders::Bool, response_stream::Nothing, http_version::HTTP.Strings.HTTPVersion, verbose::Int64, kw::@Kwargs{}) @ HTTP.MessageRequest ~/.julia/packages/HTTP/ShTJs/src/clientlayers/MessageRequest.jl:35 [20] makerequest @ ~/.julia/packages/HTTP/ShTJs/src/clientlayers/MessageRequest.jl:24 [inlined] [21] request(stack::HTTP.MessageRequest.var"#makerequest#3"{HTTP.MessageRequest.var"#makerequest#1#4"{HTTP.RedirectRequest.var"#redirects#3"{HTTP.RedirectRequest.var"#redirects#1#4"{HTTP.HeadersRequest.var"#defaultheaders#2"{HTTP.HeadersRequest.var"#defaultheaders#1#3"{HTTP.CookieRequest.var"#managecookies#4"{HTTP.CookieRequest.var"#managecookies#1#5"{HTTP.RetryRequest.var"#manageretries#3"{HTTP.RetryRequest.var"#manageretries#1#4"{HTTP.ConnectionRequest.var"#connections#4"{HTTP.ConnectionRequest.var"#connections#1#5"{HTTP.TimeoutRequest.var"#timeouts#3"{HTTP.TimeoutRequest.var"#timeouts#1#4"{HTTP.ExceptionRequest.var"#exceptions#2"{HTTP.ExceptionRequest.var"#exceptions#1#3"{typeof(HTTP.StreamRequest.streamlayer)}}}}}}}}}}}}}}}}, method::String, url::String, h::Vector{Pair{String, String}}, b::String, q::Nothing; headers::Vector{Pair{String, String}}, body::String, query::Nothing, kw::@Kwargs{}) @ HTTP ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:457 [22] request(stack::Function, method::String, url::String, h::Vector{Pair{String, String}}, b::String, q::Nothing) @ HTTP ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:455 [23] #request#20 @ ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:315 [inlined] [24] request @ ~/.julia/packages/HTTP/ShTJs/src/HTTP.jl:313 [inlined] [25] get_for_cids(cids::Vector{Int64}; properties::Nothing, xrefs::Nothing, cids_type::Nothing, record_type::String, output::String, kwargs::@Kwargs{}) @ PubChemCrawler ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:212 [26] get_for_cids @ ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:187 [inlined] [27] get_for_cids @ ~/.julia/packages/PubChemCrawler/wXBEj/src/query.jl:216 [inlined] [28] (::AtomsBuilder.var"#22#23"{Int64})(io::IOStream) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:37 [29] open(::AtomsBuilder.var"#22#23"{Int64}, ::String, ::Vararg{String}; kwargs::@Kwargs{}) @ Base ./io.jl:410 [30] open @ ./io.jl:407 [inlined] [31] load_from_pubchem(cid::Int64) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:36 [32] load_from_pubchem(name::String) @ AtomsBuilder ~/.julia/packages/AtomsBuilder/RmS3e/src/pubchem.jl:47 [33] macro expansion @ ~/.julia/packages/AtomsBuilder/RmS3e/test/test_pubchem.jl:6 [inlined] [34] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [35] top-level scope @ ~/.julia/packages/AtomsBuilder/RmS3e/test/test_pubchem.jl:6 [36] include(fname::String) @ Main ./sysimg.jl:38 [37] macro expansion @ ~/.julia/packages/AtomsBuilder/RmS3e/test/runtests.jl:8 [inlined] [38] macro expansion @ /opt/julia/share/julia/stdlib/v1.11/Test/src/Test.jl:1709 [inlined] [39] top-level scope @ ~/.julia/packages/AtomsBuilder/RmS3e/test/runtests.jl:6 [40] include(fname::String) @ Main ./sysimg.jl:38 [41] top-level scope @ none:6 Test Summary: | Pass Error Total Time AtomsBuilder.jl | 49 1 50 1m16.4s bulk | 47 47 36.0s utils | 2 2 4.2s PubChem inteface | 1 1 36.1s ERROR: LoadError: Some tests did not pass: 49 passed, 0 failed, 1 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/AtomsBuilder/RmS3e/test/runtests.jl:4 Testing failed after 92.94s ERROR: LoadError: Package AtomsBuilder errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2128 [3] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/Operations.jl:2011 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:481 [5] test(pkgs::Vector{Pkg.Types.PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:159 [6] test @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:147 [inlined] [7] #test#74 @ /opt/julia/share/julia/stdlib/v1.11/Pkg/src/API.jl:146 [inlined] [8] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:223 in expression starting at /PkgEval.jl/scripts/evaluate.jl:214 PkgEval failed after 138.27s: package tests unexpectedly errored