Package evaluation to test AllenSDK on Julia 1.11.8 (29b3528cce*) started at 2026-01-20T04:30:03.152


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...
  Activating project at `~/.julia/environments/v1.11`

Set-up completed after 8.28s


################################################################################
# Installation
#

Installing AllenSDK...
   Resolving package versions...
    Updating `~/.julia/environments/v1.11/Project.toml`
  [9d22b198] + AllenSDK v0.3.1
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [9d22b198] + AllenSDK v0.3.1
  [992eb4ea] + CondaPkg v0.2.33
  [9a962f9c] + DataAPI v1.16.0
  [e2d170a0] + DataValueInterfaces v1.0.0
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.1
  [0f8b85d8] + JSON3 v1.14.3
  [1914dd2f] + MacroTools v0.5.16
  [0b3b1443] + MicroMamba v0.1.14
  [bac558e1] + OrderedCollections v1.8.1
  [69de0a69] + Parsers v2.8.3
  [fa939f87] + Pidfile v1.3.0
⌅ [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.5.1
  [6099a3de] + PythonCall v0.9.31
  [6c6a2e73] + Scratch v1.3.0
  [856f2bd8] + StructTypes v1.11.0
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.1
  [e17b2a0c] + UnsafePointers v1.0.0
⌅ [f8abcde7] + micromamba_jll v1.5.12+0
  [4d7b5844] + pixi_jll v0.41.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Installation completed after 5.0s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...

Precompiling package dependencies...
Precompiling project...
  91019.7 ms  ✓ AllenSDK
  1 dependency successfully precompiled in 93 seconds. 49 already precompiled.
  1 dependency had output during precompilation:
┌ AllenSDK
│  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml
│      CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml
│      CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/hqryp/CondaPkg.toml
│      CondaPkg Resolving changes
│               + allensdk (pip)
│               + argschema (pip)
│               + h5py (pip)
│               + hdmf (pip)
│               + libstdcxx
│               + libstdcxx-ng
│               + numpy
│               + pandas
│               + pynwb (pip)
│               + python
│               + scipy
│               + setuptools
│               + urllib3
│               + uv
│               + xarray
│      CondaPkg Initialising pixi
│               │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
│               │ init
│               │ --format pixi
│               └ /tmp/jl_y3HOL4/.CondaPkg
│  ✔ Created /tmp/jl_y3HOL4/.CondaPkg/pixi.toml
│      CondaPkg Wrote /tmp/jl_y3HOL4/.CondaPkg/pixi.toml
│               │ [dependencies]
│               │ urllib3 = "<2"
│               │ libstdcxx = ">=3.4,<14.0"
│               │ uv = ">=0.4"
│               │ libstdcxx-ng = ">=3.4,<14.0"
│               │ pandas = "==1.5.3"
│               │ xarray = "<2023.2.0"
│               │ numpy = "<1.24"
│               │ setuptools = "<81"
│               │ scipy = "<1.11"
│               │ 
│               │     [dependencies.python]
│               │     channel = "conda-forge"
│               │     build = "*cp*"
│               │     version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.9,<3.13"
│               │ 
│               │ [project]
│               │ name = ".CondaPkg"
│               │ platforms = ["linux-64"]
│               │ channels = ["conda-forge"]
│               │ channel-priority = "strict"
│               │ description = "automatically generated by CondaPkg.jl"
│               │ 
│               │ [pypi-dependencies]
│               │ h5py = "!=3.12.0"
│               │ pynwb = "<3"
│               │ allensdk = "==2.16.2"
│               │ hdmf = ">3.8,<4"
│               └ argschema = ">=3.0.1"
│      CondaPkg Installing packages
│               │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
│               │ install
│               └ --manifest-path /tmp/jl_y3HOL4/.CondaPkg/pixi.toml
│  ✔ The default environment has been installed.
└  

Precompilation completed after 87.98s


################################################################################
# Testing
#

     Testing AllenSDK
      Status `/tmp/jl_lh4fUr/Project.toml`
  [9d22b198] AllenSDK v0.3.1
  [6099a3de] PythonCall v0.9.31
  [6c6a2e73] Scratch v1.3.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_lh4fUr/Manifest.toml`
  [9d22b198] AllenSDK v0.3.1
  [992eb4ea] CondaPkg v0.2.33
  [9a962f9c] DataAPI v1.16.0
  [e2d170a0] DataValueInterfaces v1.0.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.1
  [0f8b85d8] JSON3 v1.14.3
  [1914dd2f] MacroTools v0.5.16
  [0b3b1443] MicroMamba v0.1.14
  [bac558e1] OrderedCollections v1.8.1
  [69de0a69] Parsers v2.8.3
  [fa939f87] Pidfile v1.3.0
⌅ [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.5.1
  [6099a3de] PythonCall v0.9.31
  [6c6a2e73] Scratch v1.3.0
  [856f2bd8] StructTypes v1.11.0
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.1
  [e17b2a0c] UnsafePointers v1.0.0
⌅ [f8abcde7] micromamba_jll v1.5.12+0
  [4d7b5844] pixi_jll v0.41.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [83775a58] Zlib_jll v1.2.13+1
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading.
     Testing Running tests...
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/83z4q/CondaPkg.toml
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/CondaPkg/0UqYV/CondaPkg.toml
    CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/hqryp/CondaPkg.toml
    CondaPkg Resolving changes
             + allensdk (pip)
             + argschema (pip)
             + h5py (pip)
             + hdmf (pip)
             + libstdcxx
             + libstdcxx-ng
             + numpy
             + pandas
             + pynwb (pip)
             + python
             + scipy
             + setuptools
             + urllib3
             + uv
             + xarray
    CondaPkg Initialising pixi
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ init
             │ --format pixi
             └ /tmp/jl_lh4fUr/.CondaPkg
✔ Created /tmp/jl_lh4fUr/.CondaPkg/pixi.toml
    CondaPkg Wrote /tmp/jl_lh4fUr/.CondaPkg/pixi.toml
             │ [dependencies]
             │ urllib3 = "<2"
             │ libstdcxx = ">=3.4,<14.0"
             │ uv = ">=0.4"
             │ libstdcxx-ng = ">=3.4,<14.0"
             │ pandas = "==1.5.3"
             │ xarray = "<2023.2.0"
             │ numpy = "<1.24"
             │ setuptools = "<81"
             │ scipy = "<1.11"
             │ 
             │     [dependencies.python]
             │     channel = "conda-forge"
             │     build = "*cp*"
             │     version = ">=3.10,!=3.14.0,!=3.14.1,<4, >=3.9,<3.13"
             │ 
             │ [project]
             │ name = ".CondaPkg"
             │ platforms = ["linux-64"]
             │ channels = ["conda-forge"]
             │ channel-priority = "strict"
             │ description = "automatically generated by CondaPkg.jl"
             │ 
             │ [pypi-dependencies]
             │ h5py = "!=3.12.0"
             │ pynwb = "<3"
             │ allensdk = "==2.16.2"
             │ hdmf = ">3.8,<4"
             └ argschema = ">=3.0.1"
    CondaPkg Installing packages
             │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi
             │ install
             └ --manifest-path /tmp/jl_lh4fUr/.CondaPkg/pixi.toml
✔ The default environment has been installed.

ecephys_sessions.csv:   0%|          | 0.00/64.4k [00:00<?, ?MB/s]
ecephys_sessions.csv:   2%|▏         | 1.02k/64.4k [00:00<00:06, 10.0kMB/s]
ecephys_sessions.csv: 100%|██████████| 64.4k/64.4k [00:00<00:00, 618kMB/s] 

behavior_sessions.csv:   0%|          | 0.00/562k [00:00<?, ?MB/s]
behavior_sessions.csv:   0%|          | 1.02k/562k [00:00<01:35, 5.89kMB/s]
behavior_sessions.csv: 100%|██████████| 562k/562k [00:00<00:00, 2.72MMB/s] 

units.csv:   0%|          | 0.00/134M [00:00<?, ?MB/s]
units.csv:   0%|          | 1.02k/134M [00:00<5:20:25, 6.96kMB/s]
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units.csv:   6%|▌         | 7.49M/134M [00:00<00:05, 24.7MMB/s]
units.csv:   9%|▉         | 12.1M/134M [00:00<00:03, 32.0MMB/s]
units.csv:  13%|█▎        | 16.9M/134M [00:00<00:03, 37.6MMB/s]
units.csv:  16%|█▌        | 21.7M/134M [00:00<00:02, 40.7MMB/s]
units.csv:  20%|█▉        | 26.4M/134M [00:00<00:02, 42.7MMB/s]
units.csv:  23%|██▎       | 31.1M/134M [00:00<00:02, 44.1MMB/s]
units.csv:  27%|██▋       | 36.0M/134M [00:00<00:02, 45.7MMB/s]
units.csv:  30%|███       | 40.6M/134M [00:01<00:02, 43.6MMB/s]
units.csv:  34%|███▍      | 45.4M/134M [00:01<00:02, 42.6MMB/s]
units.csv:  37%|███▋      | 49.9M/134M [00:01<00:01, 43.4MMB/s]
units.csv:  41%|████      | 54.3M/134M [00:01<00:01, 42.7MMB/s]
units.csv:  44%|████▍     | 59.4M/134M [00:01<00:01, 45.0MMB/s]
units.csv:  48%|████▊     | 63.9M/134M [00:01<00:01, 43.8MMB/s]
units.csv:  51%|█████▏    | 68.9M/134M [00:01<00:01, 43.4MMB/s]
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units.csv:  59%|█████▊    | 78.5M/134M [00:01<00:01, 44.1MMB/s]
units.csv:  63%|██████▎   | 84.0M/134M [00:02<00:01, 47.2MMB/s]
units.csv:  66%|██████▋   | 88.8M/134M [00:02<00:00, 45.3MMB/s]
units.csv:  70%|██████▉   | 93.3M/134M [00:02<00:00, 44.2MMB/s]
units.csv:  73%|███████▎  | 98.3M/134M [00:02<00:00, 45.7MMB/s]
units.csv:  77%|███████▋  | 103M/134M [00:02<00:00, 44.8MMB/s] 
units.csv:  81%|████████  | 108M/134M [00:02<00:00, 47.8MMB/s]
units.csv:  85%|████████▍ | 113M/134M [00:02<00:00, 45.5MMB/s]
units.csv:  88%|████████▊ | 118M/134M [00:02<00:00, 45.1MMB/s]
units.csv:  92%|█████████▏| 123M/134M [00:02<00:00, 47.3MMB/s]
units.csv:  96%|█████████▌| 128M/134M [00:03<00:00, 46.0MMB/s]
units.csv:  99%|█████████▉| 133M/134M [00:03<00:00, 47.4MMB/s]
units.csv: 100%|██████████| 134M/134M [00:03<00:00, 39.4MMB/s]

probes.csv:   0%|          | 0.00/130k [00:00<?, ?MB/s]
probes.csv:   1%|          | 1.02k/130k [00:00<00:12, 10.0kMB/s]
probes.csv: 100%|██████████| 130k/130k [00:00<00:00, 1.25MMB/s] 

channels.csv:   0%|          | 0.00/27.9M [00:00<?, ?MB/s]
channels.csv:   0%|          | 1.02k/27.9M [00:00<1:15:07, 6.19kMB/s]
channels.csv:  19%|█▉        | 5.33M/27.9M [00:00<00:00, 24.7MMB/s]  
channels.csv:  35%|███▌      | 9.85M/27.9M [00:00<00:00, 32.5MMB/s]
channels.csv:  52%|█████▏    | 14.5M/27.9M [00:00<00:00, 37.6MMB/s]
channels.csv:  71%|███████   | 19.8M/27.9M [00:00<00:00, 42.2MMB/s]
channels.csv:  87%|████████▋ | 24.4M/27.9M [00:00<00:00, 43.3MMB/s]
channels.csv: 100%|██████████| 27.9M/27.9M [00:00<00:00, 33.4MMB/s]
Test Summary: | Pass  Total   Time
AllenSDK.jl   |    7      7  11.1s
     Testing AllenSDK tests passed 

Testing completed after 78.39s

PkgEval succeeded after 268.51s